Sed0009823.1 (mRNA) Chayote v1

Overview


Name	Sed0009823.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Retrotrans_gag domain-containing protein
Location	LG07: 34320443 .. 34320718 (+)
Sequence length	276
RNA-Seq Expression	Sed0009823.1
Synteny	Sed0009823.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACCTCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATAAAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA

mRNA sequence

ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACCTCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATAAAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA

Coding sequence (CDS)

ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACCTCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATAAAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA

Protein sequence

MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHGMTRQALS

Homology

[Close]

BLAST of Sed0009823.1 vs. NCBI nr
Match: KAA0062476.1 (uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK27406.1 uncharacterized protein E5676_scaffold325G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK +ADRLVEL+E+M YL EV D+I FL+ RL+EI +KA  IDAVT RLDG+P
Sbjct: 1  MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          IQEL+ RV+T+E K  R G +EHG
Sbjct: 61 IQELLTRVDTLETKVVRTGNYEHG 84

[Close]

BLAST of Sed0009823.1 vs. NCBI nr
Match: KAA0025805.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK09651.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS      KA+ DRLVELEE+MLYL EVPD+IRFLE RL+EI +K  MIDAV GR++G+P
Sbjct: 1  MSSANPSSKAQRDRLVELEEQMLYLVEVPDSIRFLESRLEEIAEKTNMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEH 84
          IQEL+ RV+T+E    R G  EH
Sbjct: 61 IQELLARVDTLEGTVGRTGSHEH 83

[Close]

BLAST of Sed0009823.1 vs. NCBI nr
Match: KAA0032146.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]

BLAST of Sed0009823.1 vs. NCBI nr
Match: TYK14391.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]

BLAST of Sed0009823.1 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK+  DRLVE+EE +L+LRE+PDN+R++E RLDEI  KA  ID V  R+DG+ 
Sbjct: 1  MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          I+ELM+RVET+EDK  R    E G
Sbjct: 61 IRELMLRVETLEDKVKRTDNLERG 84

[Close]

BLAST of Sed0009823.1 vs. ExPASy TrEMBL
Match: A0A5D3DUL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00940 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK +ADRLVEL+E+M YL EV D+I FL+ RL+EI +KA  IDAVT RLDG+P
Sbjct: 1  MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          IQEL+ RV+T+E K  R G +EHG
Sbjct: 61 IQELLTRVDTLETKVVRTGNYEHG 84

[Close]

BLAST of Sed0009823.1 vs. ExPASy TrEMBL
Match: A0A5D3CCT9 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00510 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.4e-18
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS      KA+ DRLVELEE+MLYL EVPD+IRFLE RL+EI +K  MIDAV GR++G+P
Sbjct: 1  MSSANPSSKAQRDRLVELEEQMLYLVEVPDSIRFLESRLEEIAEKTNMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEH 84
          IQEL+ RV+T+E    R G  EH
Sbjct: 61 IQELLARVDTLEGTVGRTGSHEH 83

[Close]

BLAST of Sed0009823.1 vs. ExPASy TrEMBL
Match: A0A5D3CRH9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00330 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]

BLAST of Sed0009823.1 vs. ExPASy TrEMBL
Match: A0A5A7SQ54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00580 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]

BLAST of Sed0009823.1 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK+  DRLVE+EE +L+LRE+PDN+R++E RLDEI  KA  ID V  R+DG+ 
Sbjct: 1  MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          I+ELM+RVET+EDK  R    E G
Sbjct: 61 IRELMLRVETLEDKVKRTDNLERG 84

The following BLAST results are available for this feature:

BLAST of Sed0009823.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062476.1	1.3e-17	61.90	uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0025805.1	1.7e-17	61.45	senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK09651...	[more]
KAA0032146.1	2.3e-17	63.16	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14391.1	2.3e-17	63.16	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_022155185.1	2.3e-17	57.14	uncharacterized protein LOC111022320 [Momordica charantia]	[more]

BLAST of Sed0009823.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009823.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUL1	6.4e-18	61.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CCT9	8.4e-18	61.45	Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3CRH9	1.1e-17	63.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SQ54	1.1e-17	63.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1DLQ6	1.1e-17	57.14	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Sed0009823.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0009823	Sed0009823	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0009823.1-exon	Sed0009823.1-exon-LG07:34320443..34320718	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0009823.1-cds	Sed0009823.1-cds-LG07:34320443..34320718	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0009823.1	Sed0009823.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding