Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA
mRNA sequence
ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA
Coding sequence (CDS)
ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA
Protein sequence
MRKVSIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDNIFCVGDDLRL
Homology
BLAST of Sed0005745 vs. NCBI nr
Match:
XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])
HSP 1 Score: 75.1 bits (183), Expect = 5.8e-10
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 0
Query: 5 SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
+I RN RGEV+ +S + V N E EAL + A+EFAI G + + D V V+ +
Sbjct: 1048 AIVRNERGEVMAALSVKGPLVWNSEEAEALACRRAVEFAIHAGFAELMIEGDNVNVMKAV 1107
Query: 65 QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
+ S+D+S +G + +I+ L L + V RG AN +AH LARF + E W+EE
Sbjct: 1108 CSNSMDKSRLGHVFQDIQCLVHGLRWSSVSCVKRG-ANGVAHSLARFARYVSEETIWLEE 1167
Query: 125 VPTFCSSIYNFELVKDN 142
P S +L+ N
Sbjct: 1168 CPPLASDALYQDLLSLN 1183
BLAST of Sed0005745 vs. NCBI nr
Match:
XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])
HSP 1 Score: 74.3 bits (181), Expect = 9.9e-10
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 0
Query: 5 SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
++ RN GEV+ +S V + + E L ++A+EFA+ G + + D++ V+ +
Sbjct: 377 AVIRNELGEVMAALSAIGPSVSSSDEAETLACRKAMEFAVDAGFNELIIEGDSINVIKAL 436
Query: 65 QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
++S D S VG +V +IK L S L V F WV+R + N +AH LA+F + WME+
Sbjct: 437 SSSSPDLSVVGNVVADIKCLISGLRRVSFSWVNR-DCNRVAHALAKFANSLEEDLYWMED 496
Query: 125 VPTFCSSIYNFELVKDNI 143
P + + NI
Sbjct: 497 APPVALDALFLDSISMNI 513
BLAST of Sed0005745 vs. NCBI nr
Match:
XP_023927486.1 (uncharacterized protein LOC112038880 [Quercus suber])
HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 0
Query: 6 IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQ 65
I RN +G V+ +S+QI + E VE L ++A+ FA LG ++E+ D+ V I
Sbjct: 1206 IIRNEQGLVMAALSQQIPSPTSVEMVEVLAARQAVLFAKELGFDKVELEGDSESVTKAIL 1265
Query: 66 NASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEV 125
+DRS +G ++ +IK L S+ + + + R E N +AHKLAR V + WME V
Sbjct: 1266 GDYMDRSYIGHVLQDIKFLFSSFSVISVKHIYR-EGNCVAHKLARRAV-NSPFLVWMESV 1325
Query: 126 PTFCSSIYNFELVK 140
P+ +Y +L++
Sbjct: 1326 PSDIFDVYQHDLLR 1337
BLAST of Sed0005745 vs. NCBI nr
Match:
XP_030922950.1 (uncharacterized protein LOC115949814 [Quercus lobata])
HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 0
Query: 6 IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQ 65
I RN G V+ +++QI + E VE L T+ AL FA+ LG R+ + D ++ I+
Sbjct: 76 IIRNDVGLVMAAMTQQIPLPASMEMVEVLATRRALWFAMELGFDRLVVEGDTEVIINSIK 135
Query: 66 NASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEV 125
++ S G I+ +I L S +YV F + R + N +AHKLAR + ++ WME +
Sbjct: 136 EGNMSHSAFGHILQDITSLCSLFSYVSFQHIKR-QGNGVAHKLARRAITNLLD-VWMESI 195
Query: 126 PTFCSSIYNFEL 138
+ +YNF+L
Sbjct: 196 LPDTNDVYNFDL 205
BLAST of Sed0005745 vs. NCBI nr
Match:
XP_030973303.1 (uncharacterized protein LOC115993151 [Quercus lobata])
HSP 1 Score: 72.0 bits (175), Expect = 4.9e-09
Identity = 38/126 (30.16%), Postives = 72/126 (57.14%), Query Frame = 0
Query: 12 GEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDR 71
G +I +S++I+ + + VEAL + AL FA + + + + D+++V+ + N +R
Sbjct: 64 GMIIAALSQKILLPSSVDMVEALAARRALIFAQEISIFKAVVEGDSLKVIQALNNPKPNR 123
Query: 72 SEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS 131
+++G I+ +I+ LG+ + + F+ + RG N LAH LA+ VL W+EE+P
Sbjct: 124 TQLGHIITDIQRLGAGMQFCNFIHIRRG-GNKLAHSLAKRAVLAADTDVWLEELPQDLID 183
Query: 132 IYNFEL 138
+ F+L
Sbjct: 184 VLQFDL 188
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match:
A0A2N9GZI9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35549 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0
Query: 5 SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
+I RN RGEV+ + ++I + E VEA K A+ F + LGLQ +++ D+++++ +
Sbjct: 1379 AIVRNHRGEVMAALCQRIPYPYSIEAVEASAAKAAVTFVLDLGLQEVDIEGDSLKIITAL 1438
Query: 65 QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
Q S + G ++ + L NL QF+ V R + NS+AH LA+ L WME
Sbjct: 1439 QQTSPCYTSYGHLILDTNTLAQNLTSYQFMHVKR-DGNSVAHSLAKRARLCEPLEIWMES 1498
Query: 125 VP 127
VP
Sbjct: 1499 VP 1499
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match:
A0A7J9CXY0 (RNase H domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021786 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0
Query: 32 EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYV 91
EAL +ALEFA+ +G Q IEM D+ + Q ++DR E+G + EIK L + +++
Sbjct: 59 EALACVQALEFAMKMGFQHIEMEGDSRTTIVKAQKCALDRPEIGIHIEEIKRLATKFHFI 118
Query: 92 QFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYN 135
F +V EAN +AH +A+ T H W+EEVP + N
Sbjct: 119 YFQYVDT-EANGVAHTIAKAGFPLTENHFWVEEVPKSAMDVVN 160
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match:
A0A7J8WM62 (RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_017585 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0
Query: 32 EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYV 91
EAL +ALEFA+ +G Q IEM D+ + Q ++DR E+G + EIK L + +++
Sbjct: 28 EALACVQALEFAMKMGFQHIEMEGDSRNTIVKAQKWALDRPEIGNHIEEIKRLATKFHFI 87
Query: 92 QFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYN 135
F +V EAN +AH +A+ T H W+EEVP + N
Sbjct: 88 YFQYVDI-EANGVAHTIAKAGFPLTENHFWVEEVPKSAMEVVN 129
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match:
A0A2N9E9A1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3428 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0
Query: 5 SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
+I RN RGEV+ + ++I + E VEA K A+ F + LG+Q +++ D+++++ +
Sbjct: 1653 AIVRNHRGEVMAALCQRIPYPYSIEAVEASAAKAAVTFVLDLGIQEVDIEGDSLKIITAL 1712
Query: 65 QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
Q S + G ++ + L NL QF+ V R + NS+AH LA+ L WME
Sbjct: 1713 QQISPCYTSYGHLILDTNTLAQNLTSYQFMHVKR-DGNSVAHSLAKRARLCEPLEIWMES 1772
Query: 125 VP 127
VP
Sbjct: 1773 VP 1773
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match:
A0A7J9N7D8 (RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_025526 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 6.9e-09
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0
Query: 32 EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYV 91
EAL +ALEFA+ +G Q IEM D+ + Q ++DR E+G + EIK L + +++
Sbjct: 59 EALACVQALEFAMKMGFQHIEMEGDSRTTIVKAQKWALDRPEIGIHIEEIKRLATKFHFI 118
Query: 92 QFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYN 135
F +V EAN +AH +A+ T H W+EEVP + N
Sbjct: 119 YFQYVDT-EANGVAHTIAKAGFPLTENHFWVEEVPKSAMEVVN 160
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9GZI9 | 1.8e-09 | 34.43 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A7J9CXY0 | 3.1e-09 | 37.86 | RNase H domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_02... | [more] |
A0A7J8WM62 | 4.1e-09 | 37.86 | RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_017585 P... | [more] |
A0A2N9E9A1 | 4.1e-09 | 33.61 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A7J9N7D8 | 6.9e-09 | 37.86 | RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_0... | [more] |
Match Name | E-value | Identity | Description | |