Sed0005745.1 (mRNA) Chayote v1

Overview


Name	Sed0005745.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RNase H domain-containing protein
Location	LG12: 9310147 .. 9310602 (-)
Sequence length	456
RNA-Seq Expression	Sed0005745.1
Synteny	Sed0005745.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA

mRNA sequence

ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA

Coding sequence (CDS)

ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA

Protein sequence

MRKVSIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDNIFCVGDDLRL

Homology

[Close]

BLAST of Sed0005745.1 vs. NCBI nr
Match: XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-10
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 5    SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
            +I RN RGEV+  +S +   V N E  EAL  + A+EFAI  G   + +  D V V+  +
Sbjct: 1048 AIVRNERGEVMAALSVKGPLVWNSEEAEALACRRAVEFAIHAGFAELMIEGDNVNVMKAV 1107

Query: 65   QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
             + S+D+S +G +  +I+ L   L +     V RG AN +AH LARF    + E  W+EE
Sbjct: 1108 CSNSMDKSRLGHVFQDIQCLVHGLRWSSVSCVKRG-ANGVAHSLARFARYVSEETIWLEE 1167

Query: 125  VPTFCSSIYNFELVKDN 142
             P   S     +L+  N
Sbjct: 1168 CPPLASDALYQDLLSLN 1183

[Close]

BLAST of Sed0005745.1 vs. NCBI nr
Match: XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])

HSP 1 Score: 74.3 bits (181), Expect = 9.9e-10
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 5   SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
           ++ RN  GEV+  +S     V + +  E L  ++A+EFA+  G   + +  D++ V+  +
Sbjct: 377 AVIRNELGEVMAALSAIGPSVSSSDEAETLACRKAMEFAVDAGFNELIIEGDSINVIKAL 436

Query: 65  QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
            ++S D S VG +V +IK L S L  V F WV+R + N +AH LA+F      +  WME+
Sbjct: 437 SSSSPDLSVVGNVVADIKCLISGLRRVSFSWVNR-DCNRVAHALAKFANSLEEDLYWMED 496

Query: 125 VPTFCSSIYNFELVKDNI 143
            P         + +  NI
Sbjct: 497 APPVALDALFLDSISMNI 513

[Close]

BLAST of Sed0005745.1 vs. NCBI nr
Match: XP_023927486.1 (uncharacterized protein LOC112038880 [Quercus suber])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 6    IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQ 65
            I RN +G V+  +S+QI    + E VE L  ++A+ FA  LG  ++E+  D+  V   I 
Sbjct: 1206 IIRNEQGLVMAALSQQIPSPTSVEMVEVLAARQAVLFAKELGFDKVELEGDSESVTKAIL 1265

Query: 66   NASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEV 125
               +DRS +G ++ +IK L S+ + +    + R E N +AHKLAR  V  +    WME V
Sbjct: 1266 GDYMDRSYIGHVLQDIKFLFSSFSVISVKHIYR-EGNCVAHKLARRAV-NSPFLVWMESV 1325

Query: 126  PTFCSSIYNFELVK 140
            P+    +Y  +L++
Sbjct: 1326 PSDIFDVYQHDLLR 1337

[Close]

BLAST of Sed0005745.1 vs. NCBI nr
Match: XP_030922950.1 (uncharacterized protein LOC115949814 [Quercus lobata])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 6   IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQ 65
           I RN  G V+  +++QI    + E VE L T+ AL FA+ LG  R+ +  D   ++  I+
Sbjct: 76  IIRNDVGLVMAAMTQQIPLPASMEMVEVLATRRALWFAMELGFDRLVVEGDTEVIINSIK 135

Query: 66  NASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEV 125
             ++  S  G I+ +I  L S  +YV F  + R + N +AHKLAR  +   ++  WME +
Sbjct: 136 EGNMSHSAFGHILQDITSLCSLFSYVSFQHIKR-QGNGVAHKLARRAITNLLD-VWMESI 195

Query: 126 PTFCSSIYNFEL 138
               + +YNF+L
Sbjct: 196 LPDTNDVYNFDL 205

[Close]

BLAST of Sed0005745.1 vs. NCBI nr
Match: XP_030973303.1 (uncharacterized protein LOC115993151 [Quercus lobata])

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-09
Identity = 38/126 (30.16%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 12  GEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDR 71
           G +I  +S++I+   + + VEAL  + AL FA  + + +  +  D+++V+  + N   +R
Sbjct: 64  GMIIAALSQKILLPSSVDMVEALAARRALIFAQEISIFKAVVEGDSLKVIQALNNPKPNR 123

Query: 72  SEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS 131
           +++G I+ +I+ LG+ + +  F+ + RG  N LAH LA+  VL      W+EE+P     
Sbjct: 124 TQLGHIITDIQRLGAGMQFCNFIHIRRG-GNKLAHSLAKRAVLAADTDVWLEELPQDLID 183

Query: 132 IYNFEL 138
           +  F+L
Sbjct: 184 VLQFDL 188

[Close]

BLAST of Sed0005745.1 vs. ExPASy TrEMBL
Match: A0A2N9GZI9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35549 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 5    SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
            +I RN RGEV+  + ++I    + E VEA   K A+ F + LGLQ +++  D+++++  +
Sbjct: 1379 AIVRNHRGEVMAALCQRIPYPYSIEAVEASAAKAAVTFVLDLGLQEVDIEGDSLKIITAL 1438

Query: 65   QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
            Q  S   +  G ++ +   L  NL   QF+ V R + NS+AH LA+   L      WME 
Sbjct: 1439 QQTSPCYTSYGHLILDTNTLAQNLTSYQFMHVKR-DGNSVAHSLAKRARLCEPLEIWMES 1498

Query: 125  VP 127
            VP
Sbjct: 1499 VP 1499

[Close]

BLAST of Sed0005745.1 vs. ExPASy TrEMBL
Match: A0A7J9CXY0 (RNase H domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021786 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 32  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYV 91
           EAL   +ALEFA+ +G Q IEM  D+   +   Q  ++DR E+G  + EIK L +  +++
Sbjct: 59  EALACVQALEFAMKMGFQHIEMEGDSRTTIVKAQKCALDRPEIGIHIEEIKRLATKFHFI 118

Query: 92  QFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYN 135
            F +V   EAN +AH +A+     T  H W+EEVP     + N
Sbjct: 119 YFQYVDT-EANGVAHTIAKAGFPLTENHFWVEEVPKSAMDVVN 160

[Close]

BLAST of Sed0005745.1 vs. ExPASy TrEMBL
Match: A0A7J8WM62 (RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_017585 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 32  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYV 91
           EAL   +ALEFA+ +G Q IEM  D+   +   Q  ++DR E+G  + EIK L +  +++
Sbjct: 28  EALACVQALEFAMKMGFQHIEMEGDSRNTIVKAQKWALDRPEIGNHIEEIKRLATKFHFI 87

Query: 92  QFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYN 135
            F +V   EAN +AH +A+     T  H W+EEVP     + N
Sbjct: 88  YFQYVDI-EANGVAHTIAKAGFPLTENHFWVEEVPKSAMEVVN 129

[Close]

BLAST of Sed0005745.1 vs. ExPASy TrEMBL
Match: A0A2N9E9A1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3428 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 5    SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLI 64
            +I RN RGEV+  + ++I    + E VEA   K A+ F + LG+Q +++  D+++++  +
Sbjct: 1653 AIVRNHRGEVMAALCQRIPYPYSIEAVEASAAKAAVTFVLDLGIQEVDIEGDSLKIITAL 1712

Query: 65   QNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEE 124
            Q  S   +  G ++ +   L  NL   QF+ V R + NS+AH LA+   L      WME 
Sbjct: 1713 QQISPCYTSYGHLILDTNTLAQNLTSYQFMHVKR-DGNSVAHSLAKRARLCEPLEIWMES 1772

Query: 125  VP 127
            VP
Sbjct: 1773 VP 1773

[Close]

BLAST of Sed0005745.1 vs. ExPASy TrEMBL
Match: A0A7J9N7D8 (RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_025526 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.9e-09
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 32  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYV 91
           EAL   +ALEFA+ +G Q IEM  D+   +   Q  ++DR E+G  + EIK L +  +++
Sbjct: 59  EALACVQALEFAMKMGFQHIEMEGDSRTTIVKAQKWALDRPEIGIHIEEIKRLATKFHFI 118

Query: 92  QFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYN 135
            F +V   EAN +AH +A+     T  H W+EEVP     + N
Sbjct: 119 YFQYVDT-EANGVAHTIAKAGFPLTENHFWVEEVPKSAMEVVN 160

The following BLAST results are available for this feature:

BLAST of Sed0005745.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030941688.1	5.8e-10	35.77	uncharacterized protein LOC115966628 [Quercus lobata]	[more]
XP_023904177.1	9.9e-10	31.88	uncharacterized protein LOC112015942 [Quercus suber]	[more]
XP_023927486.1	1.3e-09	34.33	uncharacterized protein LOC112038880 [Quercus suber]	[more]
XP_030922950.1	1.7e-09	34.09	uncharacterized protein LOC115949814 [Quercus lobata]	[more]
XP_030973303.1	4.9e-09	30.16	uncharacterized protein LOC115993151 [Quercus lobata]	[more]

BLAST of Sed0005745.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005745.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9GZI9	1.8e-09	34.43	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A7J9CXY0	3.1e-09	37.86	RNase H domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_02...	[more]
A0A7J8WM62	4.1e-09	37.86	RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_017585 P...	[more]
A0A2N9E9A1	4.1e-09	33.61	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A7J9N7D8	6.9e-09	37.86	RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_0...	[more]

BLAST of Sed0005745.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 8..111 e-value: 5.2E-15 score: 55.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 6..117 e-value: 1.5E-6 score: 30.2
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 6..110 e-value: 9.358E-13 score: 59.25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0005745	Sed0005745	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005745.1-cds	Sed0005745.1-cds-LG12:9310147..9310602	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005745.1-exon	Sed0005745.1-exon-LG12:9310147..9310602	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0005745.1	Sed0005745.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity