Sed0005745 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAAGGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAGTGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGCTTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGACGATCTTCGTCTTTAA MRKVSIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDNIFCVGDDLRL Homology
BLAST of Sed0005745 vs. NCBI nr
Match: XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata]) HSP 1 Score: 75.1 bits (183), Expect = 5.8e-10 Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 0
BLAST of Sed0005745 vs. NCBI nr
Match: XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber]) HSP 1 Score: 74.3 bits (181), Expect = 9.9e-10 Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 0
BLAST of Sed0005745 vs. NCBI nr
Match: XP_023927486.1 (uncharacterized protein LOC112038880 [Quercus suber]) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 0
BLAST of Sed0005745 vs. NCBI nr
Match: XP_030922950.1 (uncharacterized protein LOC115949814 [Quercus lobata]) HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09 Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 0
BLAST of Sed0005745 vs. NCBI nr
Match: XP_030973303.1 (uncharacterized protein LOC115993151 [Quercus lobata]) HSP 1 Score: 72.0 bits (175), Expect = 4.9e-09 Identity = 38/126 (30.16%), Postives = 72/126 (57.14%), Query Frame = 0
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match: A0A2N9GZI9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35549 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09 Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match: A0A7J9CXY0 (RNase H domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021786 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09 Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match: A0A7J8WM62 (RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_017585 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09 Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match: A0A2N9E9A1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3428 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0
BLAST of Sed0005745 vs. ExPASy TrEMBL
Match: A0A7J9N7D8 (RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_025526 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 6.9e-09 Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|