Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAAAATCAACAGAGTAAACATCAATGGGGAAATTCGCTGAATTGTTAGACGTCGGAGTGAGAGCGGCGGCCAGATTTCACGCCCACTGTCCCCAAACTGCTCGCCTCTACTACCATCCTCCGGCCGCCCACGACGGCGACCACGCCTACTTCCACCACATTTTTCAAGCCGTTGACGGCGGACGCTCCGCCCATCTGGCGGCGCCCTGCGCTGTCCAGACGGCGGCTTTGGCCCCACCTTTGGATTCTCAGATCGTGTTTCAGTCTGTGGGTTTTTGATGCTTTTATTTCATTTAGGG
mRNA sequence
TTTGAAAATCAACAGAGTAAACATCAATGGGGAAATTCGCTGAATTGTTAGACGTCGGAGTGAGAGCGGCGGCCAGATTTCACGCCCACTGTCCCCAAACTGCTCGCCTCTACTACCATCCTCCGGCCGCCCACGACGGCGACCACGCCTACTTCCACCACATTTTTCAAGCCGTTGACGGCGGACGCTCCGCCCATCTGGCGGCGCCCTGCGCTGTCCAGACGGCGGCTTTGGCCCCACCTTTGGATTCTCAGATCGTGTTTCAGTCTGTGGGTTTTTGATGCTTTTATTTCATTTAGGG
Coding sequence (CDS)
ATGGGGAAATTCGCTGAATTGTTAGACGTCGGAGTGAGAGCGGCGGCCAGATTTCACGCCCACTGTCCCCAAACTGCTCGCCTCTACTACCATCCTCCGGCCGCCCACGACGGCGACCACGCCTACTTCCACCACATTTTTCAAGCCGTTGACGGCGGACGCTCCGCCCATCTGGCGGCGCCCTGCGCTGTCCAGACGGCGGCTTTGGCCCCACCTTTGGATTCTCAGATCGTGTTTCAGTCTGTGGGTTTTTGA
Protein sequence
MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDHAYFHHIFQAVDGGRSAHLAAPCAVQTAALAPPLDSQIVFQSVGF
Homology
BLAST of Sed0004161 vs. NCBI nr
Match:
KAG7027749.1 (hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 110.9 bits (276), Expect = 5.3e-21
Identity = 55/86 (63.95%), Postives = 62/86 (72.09%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD----HAYFHHIFQAVDGGR-- 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HDGD H YFHH+FQA DGGR
Sbjct: 1 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60
Query: 61 --SAHLAAPCAVQTAALAPPLDSQIV 79
S L C V T A+A D+++V
Sbjct: 61 GPSTDLVEACGVDTVAMARGSDAEVV 86
BLAST of Sed0004161 vs. NCBI nr
Match:
KAG6596209.1 (hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 110.9 bits (276), Expect = 5.3e-21
Identity = 55/86 (63.95%), Postives = 62/86 (72.09%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD----HAYFHHIFQAVDGGR-- 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HDGD H YFHH+FQA DGGR
Sbjct: 36 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 95
Query: 61 --SAHLAAPCAVQTAALAPPLDSQIV 79
S L C V T A+A D+++V
Sbjct: 96 GPSTDLVEACGVDTVAMARGSDAEVV 121
BLAST of Sed0004161 vs. NCBI nr
Match:
KAG6580839.1 (hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017595.1 hypothetical protein SDJN02_19461, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 55/90 (61.11%), Postives = 61/90 (67.78%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD--HAYFHHIFQAVD----GGR 60
M KF ELLDVGVR AARFHAHCPQTARLYYHPP+ HDGD H Y H FQA D GG
Sbjct: 1 MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
Query: 61 SAHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
S L C V+T A+A D++IVF + F
Sbjct: 61 STDLVTGCGVETVAMARGFDAEIVFHTADF 90
BLAST of Sed0004161 vs. NCBI nr
Match:
KGN59359.1 (hypothetical protein Csa_002350 [Cucumis sativus])
HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD-----HAYFHHIFQAVDGGRS 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD D H Y H IFQA DGG S
Sbjct: 35 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 94
Query: 61 AHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
L ++T A+ D++ VF S F
Sbjct: 95 TELVTAYGMKTVAMDGSFDAENVFHSADF 123
BLAST of Sed0004161 vs. NCBI nr
Match:
XP_011652134.1 (uncharacterized protein LOC105434988 [Cucumis sativus])
HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD-----HAYFHHIFQAVDGGRS 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD D H Y H IFQA DGG S
Sbjct: 1 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 60
Query: 61 AHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
L ++T A+ D++ VF S F
Sbjct: 61 TELVTAYGMKTVAMDGSFDAENVFHSADF 89
BLAST of Sed0004161 vs. ExPASy TrEMBL
Match:
A0A0A0LEL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD-----HAYFHHIFQAVDGGRS 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD D H Y H IFQA DGG S
Sbjct: 35 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 94
Query: 61 AHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
L ++T A+ D++ VF S F
Sbjct: 95 TELVTAYGMKTVAMDGSFDAENVFHSADF 123
BLAST of Sed0004161 vs. ExPASy TrEMBL
Match:
A0A6J1DN79 (uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021559 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDHAYFHHIFQAVDGG--RSAHL 60
M K ELLDVGVR AARFHAHCPQTARLYYHPP+ HD H Y H I A DGG +AH
Sbjct: 1 MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDDQHHYLHQILHAYDGGGHSTAHQ 60
Query: 61 AAPCAVQTA--ALAPPLDSQIVFQSVGF 85
+ C ++TA A A D++IVF + F
Sbjct: 61 VSGCGIETAARARARSFDTEIVFHTADF 88
BLAST of Sed0004161 vs. ExPASy TrEMBL
Match:
A0A5A7TQ55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005960 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDH----AYFHHIFQAVDGGR-- 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD DH Y H IFQA DGGR
Sbjct: 1 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60
Query: 61 --SAHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
S L ++T A D++ VF S F
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92
BLAST of Sed0004161 vs. ExPASy TrEMBL
Match:
A0A1S3B7E5 (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDH----AYFHHIFQAVDGGR-- 60
MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD DH Y H IFQA DGGR
Sbjct: 1 MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60
Query: 61 --SAHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
S L ++T A D++ VF S F
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92
BLAST of Sed0004161 vs. ExPASy TrEMBL
Match:
A0A2P5EN05 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_172970 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 6.3e-12
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAA--HDGDHAYFHHIFQAV 51
MGKF ELLDVGVR AARFH+HCPQT R+YYHPP+ D DH Y+HH++ +
Sbjct: 1 MGKFVELLDVGVRIAARFHSHCPQTGRMYYHPPSGTPDDQDHDYYHHLYSTL 52
BLAST of Sed0004161 vs. TAIR 10
Match:
AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 68.9 bits (167), Expect = 2.2e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 1 MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDH 41
MGK+ E+LDVGVR AARFH+HCPQTARLYYHPP+ + H
Sbjct: 1 MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDNHHHH 40
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7027749.1 | 5.3e-21 | 63.95 | hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6596209.1 | 5.3e-21 | 63.95 | hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6580839.1 | 3.4e-20 | 61.11 | hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN59359.1 | 2.9e-19 | 58.43 | hypothetical protein Csa_002350 [Cucumis sativus] | [more] |
| XP_011652134.1 | 2.9e-19 | 58.43 | uncharacterized protein LOC105434988 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LEL3 | 1.4e-19 | 58.43 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1 | [more] |
| A0A6J1DN79 | 2.7e-18 | 57.95 | uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
| A0A5A7TQ55 | 4.5e-18 | 57.61 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3B7E5 | 4.5e-18 | 57.61 | uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=... | [more] |
| A0A2P5EN05 | 6.3e-12 | 65.38 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_172970 PE=4 SV... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G57450.1 | 2.2e-12 | 72.50 | unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac... | [more] |
