Sed0004161.1 (mRNA) Chayote v1

Overview


Name	Sed0004161.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 8426785 .. 8427085 (+)
Sequence length	301
RNA-Seq Expression	Sed0004161.1
Synteny	Sed0004161.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAAAATCAACAGAGTAAACATCAATGGGGAAATTCGCTGAATTGTTAGACGTCGGAGTGAGAGCGGCGGCCAGATTTCACGCCCACTGTCCCCAAACTGCTCGCCTCTACTACCATCCTCCGGCCGCCCACGACGGCGACCACGCCTACTTCCACCACATTTTTCAAGCCGTTGACGGCGGACGCTCCGCCCATCTGGCGGCGCCCTGCGCTGTCCAGACGGCGGCTTTGGCCCCACCTTTGGATTCTCAGATCGTGTTTCAGTCTGTGGGTTTTTGATGCTTTTATTTCATTTAGGG

mRNA sequence

TTTGAAAATCAACAGAGTAAACATCAATGGGGAAATTCGCTGAATTGTTAGACGTCGGAGTGAGAGCGGCGGCCAGATTTCACGCCCACTGTCCCCAAACTGCTCGCCTCTACTACCATCCTCCGGCCGCCCACGACGGCGACCACGCCTACTTCCACCACATTTTTCAAGCCGTTGACGGCGGACGCTCCGCCCATCTGGCGGCGCCCTGCGCTGTCCAGACGGCGGCTTTGGCCCCACCTTTGGATTCTCAGATCGTGTTTCAGTCTGTGGGTTTTTGATGCTTTTATTTCATTTAGGG

Coding sequence (CDS)

ATGGGGAAATTCGCTGAATTGTTAGACGTCGGAGTGAGAGCGGCGGCCAGATTTCACGCCCACTGTCCCCAAACTGCTCGCCTCTACTACCATCCTCCGGCCGCCCACGACGGCGACCACGCCTACTTCCACCACATTTTTCAAGCCGTTGACGGCGGACGCTCCGCCCATCTGGCGGCGCCCTGCGCTGTCCAGACGGCGGCTTTGGCCCCACCTTTGGATTCTCAGATCGTGTTTCAGTCTGTGGGTTTTTGA

Protein sequence

MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDHAYFHHIFQAVDGGRSAHLAAPCAVQTAALAPPLDSQIVFQSVGF

Homology

[Close]

BLAST of Sed0004161.1 vs. NCBI nr
Match: KAG7027749.1 (hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-21
Identity = 55/86 (63.95%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD----HAYFHHIFQAVDGGR-- 60
          MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HDGD    H YFHH+FQA DGGR  
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60

Query: 61 --SAHLAAPCAVQTAALAPPLDSQIV 79
            S  L   C V T A+A   D+++V
Sbjct: 61 GPSTDLVEACGVDTVAMARGSDAEVV 86

[Close]

BLAST of Sed0004161.1 vs. NCBI nr
Match: KAG6596209.1 (hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-21
Identity = 55/86 (63.95%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD----HAYFHHIFQAVDGGR-- 60
           MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HDGD    H YFHH+FQA DGGR  
Sbjct: 36  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 95

Query: 61  --SAHLAAPCAVQTAALAPPLDSQIV 79
             S  L   C V T A+A   D+++V
Sbjct: 96  GPSTDLVEACGVDTVAMARGSDAEVV 121

[Close]

BLAST of Sed0004161.1 vs. NCBI nr
Match: KAG6580839.1 (hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017595.1 hypothetical protein SDJN02_19461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 55/90 (61.11%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD--HAYFHHIFQAVD----GGR 60
          M KF ELLDVGVR AARFHAHCPQTARLYYHPP+ HDGD  H Y H  FQA D    GG 
Sbjct: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60

Query: 61 SAHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
          S  L   C V+T A+A   D++IVF +  F
Sbjct: 61 STDLVTGCGVETVAMARGFDAEIVFHTADF 90

[Close]

BLAST of Sed0004161.1 vs. NCBI nr
Match: KGN59359.1 (hypothetical protein Csa_002350 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1   MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD-----HAYFHHIFQAVDGGRS 60
           MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD D     H Y H IFQA DGG S
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 94

Query: 61  AHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
             L     ++T A+    D++ VF S  F
Sbjct: 95  TELVTAYGMKTVAMDGSFDAENVFHSADF 123

[Close]

BLAST of Sed0004161.1 vs. NCBI nr
Match: XP_011652134.1 (uncharacterized protein LOC105434988 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD-----HAYFHHIFQAVDGGRS 60
          MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD D     H Y H IFQA DGG S
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 60

Query: 61 AHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
            L     ++T A+    D++ VF S  F
Sbjct: 61 TELVTAYGMKTVAMDGSFDAENVFHSADF 89

[Close]

BLAST of Sed0004161.1 vs. ExPASy TrEMBL
Match: A0A0A0LEL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1   MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGD-----HAYFHHIFQAVDGGRS 60
           MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD D     H Y H IFQA DGG S
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 94

Query: 61  AHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
             L     ++T A+    D++ VF S  F
Sbjct: 95  TELVTAYGMKTVAMDGSFDAENVFHSADF 123

[Close]

BLAST of Sed0004161.1 vs. ExPASy TrEMBL
Match: A0A6J1DN79 (uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021559 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDHAYFHHIFQAVDGG--RSAHL 60
          M K  ELLDVGVR AARFHAHCPQTARLYYHPP+ HD  H Y H I  A DGG   +AH 
Sbjct: 1  MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDDQHHYLHQILHAYDGGGHSTAHQ 60

Query: 61 AAPCAVQTA--ALAPPLDSQIVFQSVGF 85
           + C ++TA  A A   D++IVF +  F
Sbjct: 61 VSGCGIETAARARARSFDTEIVFHTADF 88

[Close]

BLAST of Sed0004161.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005960 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDH----AYFHHIFQAVDGGR-- 60
          MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD DH     Y H IFQA DGGR  
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 --SAHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
            S  L     ++T A     D++ VF S  F
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Sed0004161.1 vs. ExPASy TrEMBL
Match: A0A1S3B7E5 (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDH----AYFHHIFQAVDGGR-- 60
          MGKF ELLDVGVR AARFH+HCPQTARLYYHPP+ HD DH     Y H IFQA DGGR  
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 --SAHLAAPCAVQTAALAPPLDSQIVFQSVGF 85
            S  L     ++T A     D++ VF S  F
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Sed0004161.1 vs. ExPASy TrEMBL
Match: A0A2P5EN05 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_172970 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.3e-12
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAA--HDGDHAYFHHIFQAV 51
          MGKF ELLDVGVR AARFH+HCPQT R+YYHPP+    D DH Y+HH++  +
Sbjct: 1  MGKFVELLDVGVRIAARFHSHCPQTGRMYYHPPSGTPDDQDHDYYHHLYSTL 52

[Close]

BLAST of Sed0004161.1 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MGKFAELLDVGVRAAARFHAHCPQTARLYYHPPAAHDGDH 41
          MGK+ E+LDVGVR AARFH+HCPQTARLYYHPP+ +   H
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDNHHHH 40

The following BLAST results are available for this feature:

BLAST of Sed0004161.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027749.1	5.3e-21	63.95	hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596209.1	5.3e-21	63.95	hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6580839.1	3.4e-20	61.11	hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN59359.1	2.9e-19	58.43	hypothetical protein Csa_002350 [Cucumis sativus]	[more]
XP_011652134.1	2.9e-19	58.43	uncharacterized protein LOC105434988 [Cucumis sativus]	[more]

BLAST of Sed0004161.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004161.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEL3	1.4e-19	58.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1	[more]
A0A6J1DN79	2.7e-18	57.95	uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7TQ55	4.5e-18	57.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7E5	4.5e-18	57.61	uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=...	[more]
A0A2P5EN05	6.3e-12	65.38	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_172970 PE=4 SV...	[more]

BLAST of Sed0004161.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	2.2e-12	72.50	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR33983:SF13	SUBFAMILY NOT NAMED	coord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0004161	Sed0004161	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004161.1-five_prime_utr	Sed0004161.1-five_prime_utr-LG12:8426785..8426810	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004161.1-exon	Sed0004161.1-exon-LG12:8426785..8427085	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004161.1-cds	Sed0004161.1-cds-LG12:8426811..8427065	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004161.1-three_prime_utr	Sed0004161.1-three_prime_utr-LG12:8427066..8427085	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0004161.1	Sed0004161.1-protein	polypeptide