Sed0000777 (gene) Chayote v1

Overview


Name	Sed0000777
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 1
Location	LG04: 3659221 .. 3661870 (+)
RNA-Seq Expression	Sed0000777
Synteny	Sed0000777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAAAAAAACGTACAACTTTATTTTTCTTTAAATTATCGCCTCCTCGTTTCCTTCTACCTTTCCTGCCGGCGCCGACGACAGCCCATGCGATCACCTCTCTGCCGGGACGGCGGACCAGTTCCCGGCGGCGGCGGCGAACATCCAGCCGACGAGCATATCCGGCGGCGGCTACGTTGATCGATCAGCGAACGGGGAGACCAACAGCTTTGCGATCTCTCTAACTGCGACGGCCAGCCGACGCTGCTAACTAACTCTCCAAAACCCTAGCAATCATCGGTGAGCTTGAACAATTCGTTAATTCGACTTGTTATTTCTTGTTTTTCATCGTAGAAGCTGCCCTAAATCCGCATAGTCTTACTCGTATTCAATGACAGATACAACTGAAAATCAGCACACCAAACAAGGTATTACCCAATTTTGTTCCATTCAGTTCTTTATTATTGATCATGTTAATGTTTATACATTTCCCCTCTCTGTTGTTAATCATCACTTGTTATTGTTATTATTATGATTTATGTAGAGTTATAGCAATCCCTATTAATTATTAACACGTTATTAATCCTTTGATCTTCAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAAATATGGAATAGGAAACTATTTATTTATTTACTTAATATCTTGAGTGTCTGAACTAGTTTACCTACATCTCGACTATTCTCACTTAGTTGTCAAGAAAACAATTAAAAGATTAATTTTAAGATAGATGACTACCATGGATTGAATTGAACATATCATCCCTTAGTTTCTCAAACCTTCCCTACCACTAAGTCATGGTTAAATGGGAAAGACTTTCGTTATGTCTTTACATAATTTCTTGACAACCAAATATAATAGGATTAGACTTTTGTTCCATGATAAAGTAGTCAAGATGCTTGTACTTTCTGCATGGTCATTCATTTGAGAAGAAGAATTTAAATAGATATAGCTGAAGCATTAGGATAGTTTTTCTGCACAATTGATTTACTCATGTTGCTGTAATGTCTCTGAATGCCTAGATTCATATCTTCAACTTCAGAAGCTTTGTATATTCTTGATTTGTTTCTCAAGGTTATACTTTTAGGTGATCATTACATCCTACTTCATTTAACATTTCTTTTTTTTTTCTTCTGGTATTTCATGTTCCATACCTTGTCTTTGAAATGAACAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAAGTTACCATTCTTCTTTCAATTTGTAGCAAGGTTATCTTTCTCTTAGTTTTTATGAAGTCCAGTTTTCAATATCTACTTCTTGAAGCTTAAATCAAGACCTGGTGCAGTACGAGCTTGGAGAATCTTGGATAACATGAGAATATATGAGTGTAGAAGTAGTTTTGATGATTTATTTTATTTTATTTTTTTTCAATTTCCTCCTTTCTCTGTATTGGATTGTCTTAATTTTTGTAAATTTCCTTAAATCCCTCAATCTATTCTTGTTCCTCCTGTTTGAAACTGAAAACTACCATTCTTTTTAAAAGAAGGGTAACCACACCCGTCCCTAGGCCAGACACTGAAGACATCAAAAAAGTAATGTCACATGTGAGTTTCAAACTCGGGACCTTTAGGGGAGCATACCTTTAAAACCCAAGTTTTCAACCACTACGCCACCTCTTGGAAATTGAAAACTATCATTCTGAAGTTTATGAGATAGATAGTATTGAAGGTAGATGTCTGAAGGGGTTCTTAACTAGGGCTCTTTGTTGAATTCGAAAGTGTTTCTATTGTACTCA

mRNA sequence

GTCAAAAAAAACGTACAACTTTATTTTTCTTTAAATTATCGCCTCCTCGTTTCCTTCTACCTTTCCTGCCGGCGCCGACGACAGCCCATGCGATCACCTCTCTGCCGGGACGGCGGACCAGTTCCCGGCGGCGGCGGCGAACATCCAGCCGACGAGCATATCCGGCGGCGGCTACGTTGATCGATCAGCGAACGGGGAGACCAACAGCTTTGCGATCTCTCTAACTGCGACGGCCAGCCGACGCTGCTAACTAACTCTCCAAAACCCTAGCAATCATCGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAAGTTACCATTCTTCTTTCAATTTGTAGCAAGGTTATCTTTCTCTTAGTTTTTATGAAGTCCAGTTTTCAATATCTACTTCTTGAAGCTTAAATCAAGACCTGGTGCAGTACGAGCTTGGAGAATCTTGGATAACATGAGAATATATGAGTGTAGAAGTAGTTTTGATGATTTATTTTATTTTATTTTTTTTCAATTTCCTCCTTTCTCTGTATTGGATTGTCTTAATTTTTGTAAATTTCCTTAAATCCCTCAATCTATTCTTGTTCCTCCTGTTTGAAACTGAAAACTACCATTCTTTTTAAAAGAAGGGTAACCACACCCGTCCCTAGGCCAGACACTGAAGACATCAAAAAAGTAATGTCACATGTGAGTTTCAAACTCGGGACCTTTAGGGGAGCATACCTTTAAAACCCAAGTTTTCAACCACTACGCCACCTCTTGGAAATTGAAAACTATCATTCTGAAGTTTATGAGATAGATAGTATTGAAGGTAGATGTCTGAAGGGGTTCTTAACTAGGGCTCTTTGTTGAATTCGAAAGTGTTTCTATTGTACTCA

Coding sequence (CDS)

ATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAA

Protein sequence

MIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKKCFVCNQPTLGIFNTGHEIRKKMAQSK

Homology

[Close]

BLAST of Sed0000777 vs. NCBI nr
Match: XP_023548600.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548608.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548618.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >KAG7032517.1 Zinc finger CCCH domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464.5 bits (1194), Expect = 6.0e-127
Identity = 230/269 (85.50%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777 vs. NCBI nr
Match: XP_022958735.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 464.5 bits (1194), Expect = 6.0e-127
Identity = 230/269 (85.50%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777 vs. NCBI nr
Match: XP_022971769.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 229/269 (85.13%), Postives = 248/269 (92.19%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED AEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMRSDDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777 vs. NCBI nr
Match: KAG6601808.1 (Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 229/268 (85.45%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQS 265
            KKCFVCNQPTLGIFNT HEI+KKMA+S
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Sed0000777 vs. NCBI nr
Match: XP_004149426.1 (zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypothetical protein Csa_018272 [Cucumis sativus])

HSP 1 Score: 457.6 bits (1176), Expect = 7.3e-125
Identity = 227/269 (84.39%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK S + NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  ESKLYFSSGPSKNS-SSNESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED +EQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEIRK+MAQSK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIRKRMAQSK 322

[Close]

BLAST of Sed0000777 vs. ExPASy Swiss-Prot
Match: Q8GX84 (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 379.0 bits (972), Expect = 4.3e-104
Identity = 185/269 (68.77%), Postives = 220/269 (81.78%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK S T + +     ++ +F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 73  DSKLYFSSGPSKSSTTTSGA----PERSVFHYDSSKEIQVQNDSGATATLETETDFNQDA 132

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+EALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 133 RAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 192

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 193 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 252

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 253 RNKAMGVED-EDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTK 312

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 313 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 336

[Close]

BLAST of Sed0000777 vs. ExPASy Swiss-Prot
Match: Q9FNG6 (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.6e-101
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +S LYF+SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 111 DSNLYFSSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDA 170

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 171 RAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 230

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 231 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 290

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCAL     
Sbjct: 291 RNKAMGVEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTK 350

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 351 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0000777 vs. ExPASy Swiss-Prot
Match: Q6K4V3 (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-99
Identity = 182/274 (66.42%), Postives = 209/274 (76.28%), Query Frame = 0


Query: 4   SKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDAR 63
           SKL+F+S                S+   FQ+ESS+ IQ   DS+ATATLE+ETEF RDAR
Sbjct: 63  SKLFFSSADG------------SSEPRRFQYESSRTIQASTDSRATATLETETEFDRDAR 122

Query: 64  VIRERVLKQAEEALK------GKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGS 123
            IRER LKQAEE+LK           +G   +YKG++ Y DYKAGFRREHT+SSEKAGGS
Sbjct: 123 AIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGS 182

Query: 124 HGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEV 183
           HGPLRASAHIR S R DYQ DICKDYKETGYCGYGD+CKFMHDRGDYKSGW++E+EWEE 
Sbjct: 183 HGPLRASAHIRLSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEA 242

Query: 184 EKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL 243
           EK+RKR++AMG +    +A E+ D++DE+ALPFACYIC EPFVDPVVTKCKHYFCEHCAL
Sbjct: 243 EKARKRRIAMGGDGSDYEAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCAL 302

Query: 244 ------KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
                 KKCFVCN+PTLGIFN   EIRKKMAQ K
Sbjct: 303 KHHSKNKKCFVCNKPTLGIFNAAQEIRKKMAQDK 324

[Close]

BLAST of Sed0000777 vs. ExPASy Swiss-Prot
Match: O15541 (E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-44
Identity = 108/269 (40.15%), Postives = 153/269 (56.88%), Query Frame = 0


Query: 10  SGPSKISLTDNESNVEESDKP-----IFQFESSKEIQVHHDSKATATLESETEFSRDARV 69
           SG  K +  D  S  EE ++P     +++   S +     D  ATA  E +TE  RDA+ 
Sbjct: 73  SGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQA 132

Query: 70  IRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGG--SHGPLR 129
           I ER  K  EE L+GK      + +Y+G+N+Y  Y    + + T     + G    GP+R
Sbjct: 133 IFERSQKIQEE-LRGK----EDDKIYRGINNYQKY---MKPKDTSMGNASSGMVRKGPIR 192

Query: 130 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 189
           A  H+R + R DYQ DICKDYKETG+CG+GD+CKF+HDR DYK GW++E E +E      
Sbjct: 193 APEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE------ 252

Query: 190 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK---- 249
                G     ED   +   +DE+ +PF C+IC + F +PVVTKC+HYFCE CAL+    
Sbjct: 253 -----GRYGVYEDENYEVGSDDEE-IPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRT 312

Query: 250 --KCFVCNQPTLGIFNTGHEIRKKMAQSK 266
             +C+VC+Q T G+FN   E+  K+ + +
Sbjct: 313 TPRCYVCDQQTNGVFNPAKELIAKLEKHR 321

[Close]

BLAST of Sed0000777 vs. ExPASy Swiss-Prot
Match: Q67ER4 (E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-44
Identity = 105/269 (39.03%), Postives = 151/269 (56.13%), Query Frame = 0


Query: 10  SGPSKISLTDNESNVEESDKP-----IFQFESSKEIQVHHDSKATATLESETEFSRDARV 69
           SG  K++  D  S  EE +K      +++   S +     D  ATA  E +TE  RDA+ 
Sbjct: 73  SGKQKVAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQA 132

Query: 70  IRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGG--SHGPLR 129
           I ER  K  EE L+G+      + +Y+G+N+Y  +    + + T     + G    GP+R
Sbjct: 133 IFERSQKIQEE-LRGQ----EDDKIYRGINNYQKF---MKPKDTSMGNASSGMVRKGPIR 192

Query: 130 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 189
           A  H+R + R DYQ DICKDYKETG+CG+GD+CKF+HDR DYK GW++E E +E      
Sbjct: 193 APEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE------ 252

Query: 190 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK---- 249
                    GV +        DE+ +PF C+IC + F +PVVTKC+HYFCE CAL+    
Sbjct: 253 ------GRYGVYEDENYEVGSDEEEIPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRT 312

Query: 250 --KCFVCNQPTLGIFNTGHEIRKKMAQSK 266
             +C+VC+Q T G+FN   E+  K+ + +
Sbjct: 313 TPRCYVCDQQTNGVFNPAKELIAKLEKHR 321

[Close]

BLAST of Sed0000777 vs. ExPASy TrEMBL
Match: A0A6J1H4B5 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111459918 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.9e-127
Identity = 230/269 (85.50%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777 vs. ExPASy TrEMBL
Match: A0A6J1I9H7 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111470453 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.4e-127
Identity = 229/269 (85.13%), Postives = 248/269 (92.19%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED AEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMRSDDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777 vs. ExPASy TrEMBL
Match: A0A0A0KFS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.5e-125
Identity = 227/269 (84.39%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK S + NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  ESKLYFSSGPSKNS-SSNESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED +EQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEIRK+MAQSK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIRKRMAQSK 322

[Close]

BLAST of Sed0000777 vs. ExPASy TrEMBL
Match: A0A6J1BYC6 (zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111006576 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.6e-125
Identity = 230/270 (85.19%), Postives = 247/270 (91.48%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK SL+ NESNV ESDKPIFQFESSKEIQVHHDSKATATLE+ETEFSRDA
Sbjct: 56  ESKLYFSSGPSKSSLS-NESNV-ESDKPIFQFESSKEIQVHHDSKATATLETETEFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGE-NLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPL 122
           R IRERVLKQA+EALKGKGK++G E  LYKGVN+YVDYKAGFRRE TISSEKAGG+HGPL
Sbjct: 116 RAIRERVLKQADEALKGKGKSSGDEKKLYKGVNAYVDYKAGFRREQTISSEKAGGAHGPL 175

Query: 123 RASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSR 182
           RASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+R
Sbjct: 176 RASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKAR 235

Query: 183 KRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL---- 242
           KRKLAMGS++G ED AEQ DE++EDALPFAC+IC EPFVDPV+TKCKHYFCEHCAL    
Sbjct: 236 KRKLAMGSDEGDEDTAEQSDEDEEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHA 295

Query: 243 --KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
             KKCFVCNQPTLGIFNT HEIRKKMAQSK
Sbjct: 296 KNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 323

[Close]

BLAST of Sed0000777 vs. ExPASy TrEMBL
Match: A0A1S3CS03 (zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103504086 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.3e-124
Identity = 227/269 (84.39%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK SL+ NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  ESKLYFSSGPSKNSLS-NESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED++EQ DE++E ALPFAC+IC EPFVDPVVTKC HYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEIRKKMAQSK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIRKKMAQSK 322

[Close]

BLAST of Sed0000777 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 379.0 bits (972), Expect = 3.1e-105
Identity = 185/269 (68.77%), Postives = 220/269 (81.78%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK S T + +     ++ +F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 73  DSKLYFSSGPSKSSTTTSGA----PERSVFHYDSSKEIQVQNDSGATATLETETDFNQDA 132

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+EALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 133 RAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 192

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 193 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 252

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 253 RNKAMGVED-EDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTK 312

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 313 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 336

[Close]

BLAST of Sed0000777 vs. TAIR 10
Match: AT5G06420.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 369.8 bits (948), Expect = 1.9e-102
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +S LYF+SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 111 DSNLYFSSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDA 170

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 171 RAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 230

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 231 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 290

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCAL     
Sbjct: 291 RNKAMGVEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTK 350

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 351 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0000777 vs. TAIR 10
Match: AT5G06420.2 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 369.8 bits (948), Expect = 1.9e-102
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +S LYF+SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 111 DSNLYFSSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDA 170

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 171 RAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 230

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 231 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 290

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCAL     
Sbjct: 291 RNKAMGVEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTK 350

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 351 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0000777 vs. TAIR 10
Match: AT4G01023.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-19
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 158 MHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCE 217
           + D        RLE+  ++++K   RKL        E       EED+DALP AC IC  
Sbjct: 40  VEDEDSNNESSRLEKLEKKIKKETARKL--------ETDFVLTGEEDDDALPLACSICQN 99

Query: 218 PFVDPVVTKCKHYFCEHCALK------KCFVCNQPTLGIFNTGHEIRKKMAQSK 266
           PF+DPVVT C HYFC+ CALK       CFVCN+PTLG+F+T  EI++++ + +
Sbjct: 100 PFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFDTAVEIKERIEEER 145

The following BLAST results are available for this feature:

BLAST of Sed0000777 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548600.1	6.0e-127	85.50	zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022958735.1	6.0e-127	85.50	zinc finger CCCH domain-containing protein 1 [Cucurbita moschata]	[more]
XP_022971769.1	1.7e-126	85.13	zinc finger CCCH domain-containing protein 1 [Cucurbita maxima]	[more]
KAG6601808.1	1.7e-126	85.45	Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma su...	[more]
XP_004149426.1	7.3e-125	84.39	zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypot...	[more]

BLAST of Sed0000777 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GX84	4.3e-104	68.77	Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FNG6	2.6e-101	67.66	Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6K4V3	1.1e-99	66.42	Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX...	[more]
O15541	1.7e-44	40.15	E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1	[more]
Q67ER4	8.6e-44	39.03	E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1	[more]

BLAST of Sed0000777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4B5	2.9e-127	85.50	zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1I9H7	8.4e-127	85.13	zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0KFS0	3.5e-125	84.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1	[more]
A0A6J1BYC6	4.6e-125	85.19	zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3CS03	1.3e-124	84.39	zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Sed0000777 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01350.1	3.1e-105	68.77	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.1	1.9e-102	67.66	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.2	1.9e-102	67.66	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT4G01023.1	5.7e-19	42.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 187..214 e-value: 8.8E-7 score: 38.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 188..213 e-value: 3.4E-10 score: 39.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 187..215 score: 14.746146
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 265..294 e-value: 1.6E-5 score: 24.6
None	No IPR available	GENE3D	4.10.1000.10		coord: 181..218 e-value: 9.7E-7 score: 30.1
None	No IPR available	PANTHER	PTHR12930:SF9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 1..292
None	No IPR available	CDD	cd16539	RING-HC_RNF113A_B	coord: 263..291 e-value: 4.42841E-15 score: 66.0999
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 264..296
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 219..297 e-value: 3.8E-10 score: 41.4
IPR039971	Pre-mRNA-splicing factor CWC24-like	PANTHER	PTHR12930	ZINC FINGER PROTEIN 183	coord: 1..292
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 185..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000777.1	Sed0000777.1	mRNA
Sed0000777.2	Sed0000777.2	mRNA
Sed0000777.3	Sed0000777.3	mRNA
Sed0000777.4	Sed0000777.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034247	snoRNA splicing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding