Sed0000777.1 (mRNA) Chayote v1

Overview


Name	Sed0000777.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 1
Location	LG04: 3659221 .. 3661870 (+)
Sequence length	1786
RNA-Seq Expression	Sed0000777.1
Synteny	Sed0000777.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAAAAAAACGTACAACTTTATTTTTCTTTAAATTATCGCCTCCTCGTTTCCTTCTACCTTTCCTGCCGGCGCCGACGACAGCCCATGCGATCACCTCTCTGCCGGGACGGCGGACCAGTTCCCGGCGGCGGCGGCGAACATCCAGCCGACGAGCATATCCGGCGGCGGCTACGTTGATCGATCAGCGAACGGGGAGACCAACAGCTTTGCGATCTCTCTAACTGCGACGGCCAGCCGACGCTGCTAACTAACTCTCCAAAACCCTAGCAATCATCGGTGAGCTTGAACAATTCGTTAATTCGACTTGTTATTTCTTGTTTTTCATCGTAGAAGCTGCCCTAAATCCGCATAGTCTTACTCGTATTCAATGACAGATACAACTGAAAATCAGCACACCAAACAAGGTATTACCCAATTTTGTTCCATTCAGTTCTTTATTATTGATCATGTTAATGTTTATACATTTCCCCTCTCTGTTGTTAATCATCACTTGTTATTGTTATTATTATGATTTATGTAGAGTTATAGCAATCCCTATTAATTATTAACACGTTATTAATCCTTTGATCTTCAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAAATATGGAATAGGAAACTATTTATTTATTTACTTAATATCTTGAGTGTCTGAACTAGTTTACCTACATCTCGACTATTCTCACTTAGTTGTCAAGAAAACAATTAAAAGATTAATTTTAAGATAGATGACTACCATGGATTGAATTGAACATATCATCCCTTAGTTTCTCAAACCTTCCCTACCACTAAGTCATGGTTAAATGGGAAAGACTTTCGTTATGTCTTTACATAATTTCTTGACAACCAAATATAATAGGATTAGACTTTTGTTCCATGATAAAGTAGTCAAGATGCTTGTACTTTCTGCATGGTCATTCATTTGAGAAGAAGAATTTAAATAGATATAGCTGAAGCATTAGGATAGTTTTTCTGCACAATTGATTTACTCATGTTGCTGTAATGTCTCTGAATGCCTAGATTCATATCTTCAACTTCAGAAGCTTTGTATATTCTTGATTTGTTTCTCAAGGTTATACTTTTAGGTGATCATTACATCCTACTTCATTTAACATTTCTTTTTTTTTTCTTCTGGTATTTCATGTTCCATACCTTGTCTTTGAAATGAACAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAAGTTACCATTCTTCTTTCAATTTGTAGCAAGGTTATCTTTCTCTTAGTTTTTATGAAGTCCAGTTTTCAATATCTACTTCTTGAAGCTTAAATCAAGACCTGGTGCAGTACGAGCTTGGAGAATCTTGGATAACATGAGAATATATGAGTGTAGAAGTAGTTTTGATGATTTATTTTATTTTATTTTTTTTCAATTTCCTCCTTTCTCTGTATTGGATTGTCTTAATTTTTGTAAATTTCCTTAAATCCCTCAATCTATTCTTGTTCCTCCTGTTTGAAACTGAAAACTACCATTCTTTTTAAAAGAAGGGTAACCACACCCGTCCCTAGGCCAGACACTGAAGACATCAAAAAAGTAATGTCACATGTGAGTTTCAAACTCGGGACCTTTAGGGGAGCATACCTTTAAAACCCAAGTTTTCAACCACTACGCCACCTCTTGGAAATTGAAAACTATCATTCTGAAGTTTATGAGATAGATAGTATTGAAGGTAGATGTCTGAAGGGGTTCTTAACTAGGGCTCTTTGTTGAATTCGAAAGTGTTTCTATTGTACTCA

mRNA sequence

GTCAAAAAAAACGTACAACTTTATTTTTCTTTAAATTATCGCCTCCTCGTTTCCTTCTACCTTTCCTGCCGGCGCCGACGACAGCCCATGCGATCACCTCTCTGCCGGGACGGCGGACCAGTTCCCGGCGGCGGCGGCGAACATCCAGCCGACGAGCATATCCGGCGGCGGCTACGTTGATCGATCAGCGAACGGGGAGACCAACAGCTTTGCGATCTCTCTAACTGCGACGGCCAGCCGACGCTGCTAACTAACTCTCCAAAACCCTAGCAATCATCGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAAGTTACCATTCTTCTTTCAATTTGTAGCAAGGTTATCTTTCTCTTAGTTTTTATGAAGTCCAGTTTTCAATATCTACTTCTTGAAGCTTAAATCAAGACCTGGTGCAGTACGAGCTTGGAGAATCTTGGATAACATGAGAATATATGAGTGTAGAAGTAGTTTTGATGATTTATTTTATTTTATTTTTTTTCAATTTCCTCCTTTCTCTGTATTGGATTGTCTTAATTTTTGTAAATTTCCTTAAATCCCTCAATCTATTCTTGTTCCTCCTGTTTGAAACTGAAAACTACCATTCTTTTTAAAAGAAGGGTAACCACACCCGTCCCTAGGCCAGACACTGAAGACATCAAAAAAGTAATGTCACATGTGAGTTTCAAACTCGGGACCTTTAGGGGAGCATACCTTTAAAACCCAAGTTTTCAACCACTACGCCACCTCTTGGAAATTGAAAACTATCATTCTGAAGTTTATGAGATAGATAGTATTGAAGGTAGATGTCTGAAGGGGTTCTTAACTAGGGCTCTTTGTTGAATTCGAAAGTGTTTCTATTGTACTCA

Coding sequence (CDS)

ATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAA

Protein sequence

MIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKKCFVCNQPTLGIFNTGHEIRKKMAQSK

Homology

[Close]

BLAST of Sed0000777.1 vs. NCBI nr
Match: XP_023548600.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548608.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548618.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >KAG7032517.1 Zinc finger CCCH domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464.5 bits (1194), Expect = 6.0e-127
Identity = 230/269 (85.50%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777.1 vs. NCBI nr
Match: XP_022958735.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 464.5 bits (1194), Expect = 6.0e-127
Identity = 230/269 (85.50%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777.1 vs. NCBI nr
Match: XP_022971769.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 229/269 (85.13%), Postives = 248/269 (92.19%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED AEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMRSDDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777.1 vs. NCBI nr
Match: KAG6601808.1 (Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 229/268 (85.45%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQS 265
            KKCFVCNQPTLGIFNT HEI+KKMA+S
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Sed0000777.1 vs. NCBI nr
Match: XP_004149426.1 (zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypothetical protein Csa_018272 [Cucumis sativus])

HSP 1 Score: 457.6 bits (1176), Expect = 7.3e-125
Identity = 227/269 (84.39%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK S + NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  ESKLYFSSGPSKNS-SSNESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED +EQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEIRK+MAQSK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIRKRMAQSK 322

[Close]

BLAST of Sed0000777.1 vs. ExPASy Swiss-Prot
Match: Q8GX84 (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 379.0 bits (972), Expect = 4.3e-104
Identity = 185/269 (68.77%), Postives = 220/269 (81.78%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK S T + +     ++ +F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 73  DSKLYFSSGPSKSSTTTSGA----PERSVFHYDSSKEIQVQNDSGATATLETETDFNQDA 132

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+EALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 133 RAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 192

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 193 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 252

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 253 RNKAMGVED-EDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTK 312

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 313 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 336

[Close]

BLAST of Sed0000777.1 vs. ExPASy Swiss-Prot
Match: Q9FNG6 (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.6e-101
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +S LYF+SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 111 DSNLYFSSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDA 170

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 171 RAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 230

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 231 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 290

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCAL     
Sbjct: 291 RNKAMGVEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTK 350

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 351 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0000777.1 vs. ExPASy Swiss-Prot
Match: Q6K4V3 (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-99
Identity = 182/274 (66.42%), Postives = 209/274 (76.28%), Query Frame = 0


Query: 4   SKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDAR 63
           SKL+F+S                S+   FQ+ESS+ IQ   DS+ATATLE+ETEF RDAR
Sbjct: 63  SKLFFSSADG------------SSEPRRFQYESSRTIQASTDSRATATLETETEFDRDAR 122

Query: 64  VIRERVLKQAEEALK------GKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGS 123
            IRER LKQAEE+LK           +G   +YKG++ Y DYKAGFRREHT+SSEKAGGS
Sbjct: 123 AIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGS 182

Query: 124 HGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEV 183
           HGPLRASAHIR S R DYQ DICKDYKETGYCGYGD+CKFMHDRGDYKSGW++E+EWEE 
Sbjct: 183 HGPLRASAHIRLSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEA 242

Query: 184 EKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL 243
           EK+RKR++AMG +    +A E+ D++DE+ALPFACYIC EPFVDPVVTKCKHYFCEHCAL
Sbjct: 243 EKARKRRIAMGGDGSDYEAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCAL 302

Query: 244 ------KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
                 KKCFVCN+PTLGIFN   EIRKKMAQ K
Sbjct: 303 KHHSKNKKCFVCNKPTLGIFNAAQEIRKKMAQDK 324

[Close]

BLAST of Sed0000777.1 vs. ExPASy Swiss-Prot
Match: O15541 (E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-44
Identity = 108/269 (40.15%), Postives = 153/269 (56.88%), Query Frame = 0


Query: 10  SGPSKISLTDNESNVEESDKP-----IFQFESSKEIQVHHDSKATATLESETEFSRDARV 69
           SG  K +  D  S  EE ++P     +++   S +     D  ATA  E +TE  RDA+ 
Sbjct: 73  SGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQA 132

Query: 70  IRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGG--SHGPLR 129
           I ER  K  EE L+GK      + +Y+G+N+Y  Y    + + T     + G    GP+R
Sbjct: 133 IFERSQKIQEE-LRGK----EDDKIYRGINNYQKY---MKPKDTSMGNASSGMVRKGPIR 192

Query: 130 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 189
           A  H+R + R DYQ DICKDYKETG+CG+GD+CKF+HDR DYK GW++E E +E      
Sbjct: 193 APEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE------ 252

Query: 190 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK---- 249
                G     ED   +   +DE+ +PF C+IC + F +PVVTKC+HYFCE CAL+    
Sbjct: 253 -----GRYGVYEDENYEVGSDDEE-IPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRT 312

Query: 250 --KCFVCNQPTLGIFNTGHEIRKKMAQSK 266
             +C+VC+Q T G+FN   E+  K+ + +
Sbjct: 313 TPRCYVCDQQTNGVFNPAKELIAKLEKHR 321

[Close]

BLAST of Sed0000777.1 vs. ExPASy Swiss-Prot
Match: Q67ER4 (E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-44
Identity = 105/269 (39.03%), Postives = 151/269 (56.13%), Query Frame = 0


Query: 10  SGPSKISLTDNESNVEESDKP-----IFQFESSKEIQVHHDSKATATLESETEFSRDARV 69
           SG  K++  D  S  EE +K      +++   S +     D  ATA  E +TE  RDA+ 
Sbjct: 73  SGKQKVAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQA 132

Query: 70  IRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGG--SHGPLR 129
           I ER  K  EE L+G+      + +Y+G+N+Y  +    + + T     + G    GP+R
Sbjct: 133 IFERSQKIQEE-LRGQ----EDDKIYRGINNYQKF---MKPKDTSMGNASSGMVRKGPIR 192

Query: 130 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 189
           A  H+R + R DYQ DICKDYKETG+CG+GD+CKF+HDR DYK GW++E E +E      
Sbjct: 193 APEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE------ 252

Query: 190 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK---- 249
                    GV +        DE+ +PF C+IC + F +PVVTKC+HYFCE CAL+    
Sbjct: 253 ------GRYGVYEDENYEVGSDEEEIPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRT 312

Query: 250 --KCFVCNQPTLGIFNTGHEIRKKMAQSK 266
             +C+VC+Q T G+FN   E+  K+ + +
Sbjct: 313 TPRCYVCDQQTNGVFNPAKELIAKLEKHR 321

[Close]

BLAST of Sed0000777.1 vs. ExPASy TrEMBL
Match: A0A6J1H4B5 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111459918 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.9e-127
Identity = 230/269 (85.50%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777.1 vs. ExPASy TrEMBL
Match: A0A6J1I9H7 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111470453 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.4e-127
Identity = 229/269 (85.13%), Postives = 248/269 (92.19%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  DSKLYFSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED AEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMRSDDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEI+KKMA+SK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0000777.1 vs. ExPASy TrEMBL
Match: A0A0A0KFS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.5e-125
Identity = 227/269 (84.39%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK S + NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  ESKLYFSSGPSKNS-SSNESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED +EQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEIRK+MAQSK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIRKRMAQSK 322

[Close]

BLAST of Sed0000777.1 vs. ExPASy TrEMBL
Match: A0A6J1BYC6 (zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111006576 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.6e-125
Identity = 230/270 (85.19%), Postives = 247/270 (91.48%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK SL+ NESNV ESDKPIFQFESSKEIQVHHDSKATATLE+ETEFSRDA
Sbjct: 56  ESKLYFSSGPSKSSLS-NESNV-ESDKPIFQFESSKEIQVHHDSKATATLETETEFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGE-NLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPL 122
           R IRERVLKQA+EALKGKGK++G E  LYKGVN+YVDYKAGFRRE TISSEKAGG+HGPL
Sbjct: 116 RAIRERVLKQADEALKGKGKSSGDEKKLYKGVNAYVDYKAGFRREQTISSEKAGGAHGPL 175

Query: 123 RASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSR 182
           RASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+R
Sbjct: 176 RASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKAR 235

Query: 183 KRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL---- 242
           KRKLAMGS++G ED AEQ DE++EDALPFAC+IC EPFVDPV+TKCKHYFCEHCAL    
Sbjct: 236 KRKLAMGSDEGDEDTAEQSDEDEEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHA 295

Query: 243 --KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
             KKCFVCNQPTLGIFNT HEIRKKMAQSK
Sbjct: 296 KNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 323

[Close]

BLAST of Sed0000777.1 vs. ExPASy TrEMBL
Match: A0A1S3CS03 (zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103504086 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.3e-124
Identity = 227/269 (84.39%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           ESKLYF+SGPSK SL+ NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDA
Sbjct: 56  ESKLYFSSGPSKNSLS-NESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDA 115

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLR
Sbjct: 116 RAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLR 175

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RK
Sbjct: 176 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 235

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           RKLAM S+DG ED++EQ DE++E ALPFAC+IC EPFVDPVVTKC HYFCEHCAL     
Sbjct: 236 RKLAMKSDDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKHHAK 295

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPTLGIFNT HEIRKKMAQSK
Sbjct: 296 NKKCFVCNQPTLGIFNTAHEIRKKMAQSK 322

[Close]

BLAST of Sed0000777.1 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 379.0 bits (972), Expect = 3.1e-105
Identity = 185/269 (68.77%), Postives = 220/269 (81.78%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +SKLYF+SGPSK S T + +     ++ +F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 73  DSKLYFSSGPSKSSTTTSGA----PERSVFHYDSSKEIQVQNDSGATATLETETDFNQDA 132

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+EALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 133 RAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 192

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 193 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 252

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPFVDPVVTKCKHYFCEHCAL     
Sbjct: 253 RNKAMGVED-EDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTK 312

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 313 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 336

[Close]

BLAST of Sed0000777.1 vs. TAIR 10
Match: AT5G06420.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 369.8 bits (948), Expect = 1.9e-102
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +S LYF+SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 111 DSNLYFSSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDA 170

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 171 RAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 230

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 231 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 290

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCAL     
Sbjct: 291 RNKAMGVEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTK 350

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 351 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0000777.1 vs. TAIR 10
Match: AT5G06420.2 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 369.8 bits (948), Expect = 1.9e-102
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 3   ESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDA 62
           +S LYF+SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DA
Sbjct: 111 DSNLYFSSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDA 170

Query: 63  RVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLR 122
           R IRERVLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLR
Sbjct: 171 RAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLR 230

Query: 123 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 182
           ASAHIR S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RK
Sbjct: 231 ASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRK 290

Query: 183 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCAL----- 242
           R  AMG  D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCAL     
Sbjct: 291 RNKAMGVEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTK 350

Query: 243 -KKCFVCNQPTLGIFNTGHEIRKKMAQSK 266
            KKCFVCNQPT+GIFN  HEI+K+MA+ +
Sbjct: 351 NKKCFVCNQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0000777.1 vs. TAIR 10
Match: AT4G01023.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-19
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 158 MHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCE 217
           + D        RLE+  ++++K   RKL        E       EED+DALP AC IC  
Sbjct: 40  VEDEDSNNESSRLEKLEKKIKKETARKL--------ETDFVLTGEEDDDALPLACSICQN 99

Query: 218 PFVDPVVTKCKHYFCEHCALK------KCFVCNQPTLGIFNTGHEIRKKMAQSK 266
           PF+DPVVT C HYFC+ CALK       CFVCN+PTLG+F+T  EI++++ + +
Sbjct: 100 PFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFDTAVEIKERIEEER 145

The following BLAST results are available for this feature:

BLAST of Sed0000777.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548600.1	6.0e-127	85.50	zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022958735.1	6.0e-127	85.50	zinc finger CCCH domain-containing protein 1 [Cucurbita moschata]	[more]
XP_022971769.1	1.7e-126	85.13	zinc finger CCCH domain-containing protein 1 [Cucurbita maxima]	[more]
KAG6601808.1	1.7e-126	85.45	Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma su...	[more]
XP_004149426.1	7.3e-125	84.39	zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypot...	[more]

BLAST of Sed0000777.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GX84	4.3e-104	68.77	Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FNG6	2.6e-101	67.66	Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6K4V3	1.1e-99	66.42	Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX...	[more]
O15541	1.7e-44	40.15	E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1	[more]
Q67ER4	8.6e-44	39.03	E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1	[more]

BLAST of Sed0000777.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4B5	2.9e-127	85.50	zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1I9H7	8.4e-127	85.13	zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0KFS0	3.5e-125	84.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1	[more]
A0A6J1BYC6	4.6e-125	85.19	zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3CS03	1.3e-124	84.39	zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Sed0000777.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01350.1	3.1e-105	68.77	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.1	1.9e-102	67.66	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.2	1.9e-102	67.66	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT4G01023.1	5.7e-19	42.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 134..161 e-value: 8.8E-7 score: 38.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 135..160 e-value: 2.9E-10 score: 39.8
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 134..162 score: 14.746146
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 212..243 e-value: 0.0011 score: 28.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 212..243 score: 8.71251
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 166..263 e-value: 6.6E-10 score: 40.6
None	No IPR available	GENE3D	4.10.1000.10		coord: 128..165 e-value: 8.2E-7 score: 30.3
None	No IPR available	PANTHER	PTHR12930:SF9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 2..265
None	No IPR available	CDD	cd16539	RING-HC_RNF113A_B	coord: 210..244 e-value: 3.66743E-17 score: 71.1075
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 211..248
IPR039971	Pre-mRNA-splicing factor CWC24-like	PANTHER	PTHR12930	ZINC FINGER PROTEIN 183	coord: 2..265
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 227..236
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 132..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000777	Sed0000777	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.1-five_prime_utr	Sed0000777.1-five_prime_utr-LG04:3659221..3659499	five_prime_UTR
Sed0000777.1-five_prime_utr	Sed0000777.1-five_prime_utr-LG04:3659598..3659627	five_prime_UTR
Sed0000777.1-five_prime_utr	Sed0000777.1-five_prime_utr-LG04:3659798..3659919	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.1-exon	Sed0000777.1-exon-LG04:3659221..3659499	exon
Sed0000777.1-exon	Sed0000777.1-exon-LG04:3659598..3659627	exon
Sed0000777.1-exon	Sed0000777.1-exon-LG04:3659798..3660633	exon
Sed0000777.1-exon	Sed0000777.1-exon-LG04:3661230..3661870	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.1-cds	Sed0000777.1-cds-LG04:3659920..3660633	CDS
Sed0000777.1-cds	Sed0000777.1-cds-LG04:3661230..3661313	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.1-three_prime_utr	Sed0000777.1-three_prime_utr-LG04:3661314..3661870	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000777.1	Sed0000777.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034247	snoRNA splicing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding