Sed0000777.4 (mRNA) Chayote v1

Overview


Name	Sed0000777.4
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 1
Location	LG04: 3659221 .. 3661870 (+)
Sequence length	2480
RNA-Seq Expression	Sed0000777.4
Synteny	Sed0000777.4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAAAAAAACGTACAACTTTATTTTTCTTTAAATTATCGCCTCCTCGTTTCCTTCTACCTTTCCTGCCGGCGCCGACGACAGCCCATGCGATCACCTCTCTGCCGGGACGGCGGACCAGTTCCCGGCGGCGGCGGCGAACATCCAGCCGACGAGCATATCCGGCGGCGGCTACGTTGATCGATCAGCGAACGGGGAGACCAACAGCTTTGCGATCTCTCTAACTGCGACGGCCAGCCGACGCTGCTAACTAACTCTCCAAAACCCTAGCAATCATCGGTGAGCTTGAACAATTCGTTAATTCGACTTGTTATTTCTTGTTTTTCATCGTAGAAGCTGCCCTAAATCCGCATAGTCTTACTCGTATTCAATGACAGATACAACTGAAAATCAGCACACCAAACAAGGTATTACCCAATTTTGTTCCATTCAGTTCTTTATTATTGATCATGTTAATGTTTATACATTTCCCCTCTCTGTTGTTAATCATCACTTGTTATTGTTATTATTATGATTTATGTAGAGTTATAGCAATCCCTATTAATTATTAACACGTTATTAATCCTTTGATCTTCAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAAATATGGAATAGGAAACTATTTATTTATTTACTTAATATCTTGAGTGTCTGAACTAGTTTACCTACATCTCGACTATTCTCACTTAGTTGTCAAGAAAACAATTAAAAGATTAATTTTAAGATAGATGACTACCATGGATTGAATTGAACATATCATCCCTTAGTTTCTCAAACCTTCCCTACCACTAAGTCATGGTTAAATGGGAAAGACTTTCGTTATGTCTTTACATAATTTCTTGACAACCAAATATAATAGGATTAGACTTTTGTTCCATGATAAAGTAGTCAAGATGCTTGTACTTTCTGCATGGTCATTCATTTGAGAAGAAGAATTTAAATAGATATAGCTGAAGCATTAGGATAGTTTTTCTGCACAATTGATTTACTCATGTTGCTGTAATGTCTCTGAATGCCTAGATTCATATCTTCAACTTCAGAAGCTTTGTATATTCTTGATTTGTTTCTCAAGGTTATACTTTTAGGTGATCATTACATCCTACTTCATTTAACATTTCTTTTTTTTTTCTTCTGGTATTTCATGTTCCATACCTTGTCTTTGAAATGAACAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAAGTTACCATTCTTCTTTCAATTTGTAGCAAGGTTATCTTTCTCTTAGTTTTTATGAAGTCCAGTTTTCAATATCTACTTCTTGAAGCTTAAATCAAGACCTGGTGCAGTACGAGCTTGGAGAATCTTGGATAACATGAGAATATATGAGTGTAGAAGTAGTTTTGATGATTTATTTTATTTTATTTTTTTTCAATTTCCTCCTTTCTCTGTATTGGATTGTCTTAATTTTTGTAAATTTCCTTAAATCCCTCAATCTATTCTTGTTCCTCCTGTTTGAAACTGAAAACTACCATTCTTTTTAAAAGAAGGGTAACCACACCCGTCCCTAGGCCAGACACTGAAGACATCAAAAAAGTAATGTCACATGTGAGTTTCAAACTCGGGACCTTTAGGGGAGCATACCTTTAAAACCCAAGTTTTCAACCACTACGCCACCTCTTGGAAATTGAAAACTATCATTCTGAAGTTTATGAGATAGATAGTATTGAAGGTAGATGTCTGAAGGGGTTCTTAACTAGGGCTCTTTGTTGAATTCGAAAGTGTTTCTATTGTACTCA

mRNA sequence

GTCAAAAAAAACGTACAACTTTATTTTTCTTTAAATTATCGCCTCCTCGTTTCCTTCTACCTTTCCTGCCGGCGCCGACGACAGCCCATGCGATCACCTCTCTGCCGGGACGGCGGACCAGTTCCCGGCGGCGGCGGCGAACATCCAGCCGACGAGCATATCCGGCGGCGGCTACGTTGATCGATCAGCGAACGGGGAGACCAACAGCTTTGCGATCTCTCTAACTGCGACGGCCAGCCGACGCTGCTAACTAACTCTCCAAAACCCTAGCAATCATCGGTGAGCTTGAACAATTCGTTAATTCGACTTGTTATTTCTTGTTTTTCATCGTAGAAGCTGCCCTAAATCCGCATAGTCTTACTCGTATTCAATGACAGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAAATATGGAATAGGAAACTATTTATTTATTTACTTAATATCTTGAGTGTCTGAACTAGTTTACCTACATCTCGACTATTCTCACTTAGTTGTCAAGAAAACAATTAAAAGATTAATTTTAAGATAGATGACTACCATGGATTGAATTGAACATATCATCCCTTAGTTTCTCAAACCTTCCCTACCACTAAGTCATGGTTAAATGGGAAAGACTTTCGTTATGTCTTTACATAATTTCTTGACAACCAAATATAATAGGATTAGACTTTTGTTCCATGATAAAGTAGTCAAGATGCTTGTACTTTCTGCATGGTCATTCATTTGAGAAGAAGAATTTAAATAGATATAGCTGAAGCATTAGGATAGTTTTTCTGCACAATTGATTTACTCATGTTGCTGTAATGTCTCTGAATGCCTAGATTCATATCTTCAACTTCAGAAGCTTTGTATATTCTTGATTTGTTTCTCAAGGTTATACTTTTAGGTGATCATTACATCCTACTTCATTTAACATTTCTTTTTTTTTTCTTCTGGTATTTCATGTTCCATACCTTGTCTTTGAAATGAACAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAAGTTACCATTCTTCTTTCAATTTGTAGCAAGGTTATCTTTCTCTTAGTTTTTATGAAGTCCAGTTTTCAATATCTACTTCTTGAAGCTTAAATCAAGACCTGGTGCAGTACGAGCTTGGAGAATCTTGGATAACATGAGAATATATGAGTGTAGAAGTAGTTTTGATGATTTATTTTATTTTATTTTTTTTCAATTTCCTCCTTTCTCTGTATTGGATTGTCTTAATTTTTGTAAATTTCCTTAAATCCCTCAATCTATTCTTGTTCCTCCTGTTTGAAACTGAAAACTACCATTCTTTTTAAAAGAAGGGTAACCACACCCGTCCCTAGGCCAGACACTGAAGACATCAAAAAAGTAATGTCACATGTGAGTTTCAAACTCGGGACCTTTAGGGGAGCATACCTTTAAAACCCAAGTTTTCAACCACTACGCCACCTCTTGGAAATTGAAAACTATCATTCTGAAGTTTATGAGATAGATAGTATTGAAGGTAGATGTCTGAAGGGGTTCTTAACTAGGGCTCTTTGTTGAATTCGAAAGTGTTTCTATTGTACTCA

Coding sequence (CDS)

ATGACAGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAA

Protein sequence

MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKVISISGLN

Homology

[Close]

BLAST of Sed0000777.4 vs. NCBI nr
Match: XP_022958735.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 475.3 bits (1222), Expect = 3.8e-130
Identity = 237/291 (81.44%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR +DE+E+    TET    NQKK    +SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 KSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. NCBI nr
Match: KAA0055485.1 (zinc finger CCCH domain-containing protein 1 [Cucumis melo var. makuwa] >TYK08965.1 zinc finger CCCH domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 1.1e-129
Identity = 237/298 (79.53%), Postives = 265/298 (88.93%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT + Q ++Q C FFRKPTKNKNI KR +DE+E+ DSK ET F  NQKK    ESKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK SL+ NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKNSLS-NESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKVISISGL 299
            S+DG ED++EQ DE++E ALPFAC+IC EPFVDPVVTKC HYFCEHCALKV+++S L
Sbjct: 241 KSDDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKVVALSVL 296

[Close]

BLAST of Sed0000777.4 vs. NCBI nr
Match: XP_023548600.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548608.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548618.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >KAG7032517.1 Zinc finger CCCH domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 473.4 bits (1217), Expect = 1.4e-129
Identity = 236/291 (81.10%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR +DE+E+    +ET    NQKK    +SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 KSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. NCBI nr
Match: XP_022971769.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 473.4 bits (1217), Expect = 1.4e-129
Identity = 236/291 (81.10%), Postives = 258/291 (88.66%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR +DE+E+    TET    NQKK    +SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG ED AEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 RSDDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. NCBI nr
Match: KAG6601808.1 (Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 473.4 bits (1217), Expect = 1.4e-129
Identity = 236/291 (81.10%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR +DE+E+    +ET    NQKK    +SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 KSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. ExPASy Swiss-Prot
Match: Q8GX84 (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-103
Identity = 190/287 (66.20%), Postives = 228/287 (79.44%), Query Frame = 0


Query: 6   ENQHTKQACRFFRKPTKNKNISKRIID-ENEDYDSKTETWFFSNQKKPTMIESKLYFASG 65
           +   ++Q C FF+KPTK+KNI KR ID + ED DSK+E+    N KK    +SKLYF+SG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLK 125
           PSK S T + +     ++ +F ++SSKEIQV +DS ATATLE+ET+F++DAR IRERVLK
Sbjct: 82  PSKSSTTTSGA----PERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLK 141

Query: 126 QAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTST 185
           +A+EALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR S 
Sbjct: 142 KADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSA 201

Query: 186 RLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSND 245
           R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RKR  AMG  D
Sbjct: 202 RFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVED 261

Query: 246 GVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
             +D A++  +EDE+ALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 262 -EDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALK 303

[Close]

BLAST of Sed0000777.4 vs. ExPASy Swiss-Prot
Match: Q9FNG6 (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 9.2e-103
Identity = 190/290 (65.52%), Postives = 226/290 (77.93%), Query Frame = 0


Query: 3   DTTENQHTKQACRFFRKPTKNKNISKRIID-ENEDYDSKTETWFFSNQKKPTMIESKLYF 62
           D + NQ ++Q C FF+KPTK+KNI KR ID + ED DSK+E+    N KK    +S LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  ASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRER 122
           +SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DAR IRER
Sbjct: 117 SSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRER 176

Query: 123 VLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIR 182
           VLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR
Sbjct: 177 VLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIR 236

Query: 183 TSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMG 242
            S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RKR  AMG
Sbjct: 237 VSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMG 296

Query: 243 SNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
             D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCALK
Sbjct: 297 VEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALK 338

[Close]

BLAST of Sed0000777.4 vs. ExPASy Swiss-Prot
Match: Q6K4V3 (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.6e-89
Identity = 173/287 (60.28%), Postives = 204/287 (71.08%), Query Frame = 0


Query: 14  CRFFRKPTKNKNISKR---IIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISL 73
           C F RKP   KNI KR       ++D +  +     +  KK     SKL+F+S       
Sbjct: 19  CSFVRKPP--KNIRKRPTAPAGSDDDDEDGSGAIAAARAKKAPSSTSKLFFSSADG---- 78

Query: 74  TDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEAL 133
                    S+   FQ+ESS+ IQ   DS+ATATLE+ETEF RDAR IRER LKQAEE+L
Sbjct: 79  --------SSEPRRFQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEESL 138

Query: 134 K------GKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTST 193
           K           +G   +YKG++ Y DYKAGFRREHT+SSEKAGGSHGPLRASAHIR S 
Sbjct: 139 KKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSA 198

Query: 194 RLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSND 253
           R DYQ DICKDYKETGYCGYGD+CKFMHDRGDYKSGW++E+EWEE EK+RKR++AMG + 
Sbjct: 199 RFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDG 258

Query: 254 GVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
              +A E+ D++DE+ALPFACYIC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 259 SDYEAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCALK 291

[Close]

BLAST of Sed0000777.4 vs. ExPASy Swiss-Prot
Match: O15541 (E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-38
Identity = 98/236 (41.53%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 63  SGPSKISLTDNESNVEESDKP-----IFQFESSKEIQVHHDSKATATLESETEFSRDARV 122
           SG  K +  D  S  EE ++P     +++   S +     D  ATA  E +TE  RDA+ 
Sbjct: 73  SGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQA 132

Query: 123 IRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGG--SHGPLR 182
           I ER  K  EE L+GK      + +Y+G+N+Y  Y    + + T     + G    GP+R
Sbjct: 133 IFERSQKIQEE-LRGK----EDDKIYRGINNYQKY---MKPKDTSMGNASSGMVRKGPIR 192

Query: 183 ASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRK 242
           A  H+R + R DYQ DICKDYKETG+CG+GD+CKF+HDR DYK GW++E E +E      
Sbjct: 193 APEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE------ 252

Query: 243 RKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
                G     ED   +   +DE+ +PF C+IC + F +PVVTKC+HYFCE CAL+
Sbjct: 253 -----GRYGVYEDENYEVGSDDEE-IPFKCFICRQSFQNPVVTKCRHYFCESCALQ 288

[Close]

BLAST of Sed0000777.4 vs. ExPASy Swiss-Prot
Match: O17917 (Probable E3 ubiquitin-protein ligase rnf113 OS=Caenorhabditis elegans OX=6239 GN=rnf-113 PE=2 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-38
Identity = 104/285 (36.49%), Postives = 147/285 (51.58%), Query Frame = 0


Query: 17  FRKPTKNKN--ISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISLTDNE 76
           FRKP K     + K+    +ED DS+ +      ++   M++S     +   +   + ++
Sbjct: 4   FRKPKKRNAPVVRKKESSSDEDQDSEVKDVIQKRRRTNPMVQSTKQLDASTRRADNSSDD 63

Query: 77  SNVEESDKPI------FQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEE 136
           S+  + ++ I      F            D  ATATLE +T++S DA+   ERV +Q +E
Sbjct: 64  SDDSDDNQDIAVATHSFAASGDAGPSGPRDQGATATLEVDTDYSHDAQAQFERVQQQLKE 123

Query: 137 ALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSH--GPLRASAHIRTSTRL 196
            ++  GK      LYKG   Y   +A    + T     A G +  GP+RA   +R + R 
Sbjct: 124 GVEKDGKI-----LYKGSALYGAKEA----KDTAKGNAASGYNRVGPVRAPQFLRQTVRW 183

Query: 197 DYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGV 256
           D+  DICKDYKETG+C +GD+CKF+HDR DYK GW ++EE+E                G 
Sbjct: 184 DFAPDICKDYKETGFCTFGDSCKFVHDRSDYKHGWEIDEEYE------------AGKYGA 243

Query: 257 EDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
           ED A     E +D  P  C+IC  PFVDP+VTKCKHYFC  CALK
Sbjct: 244 EDDANYEIHEGDDTFPEDCFICGNPFVDPIVTKCKHYFCTGCALK 267

[Close]

BLAST of Sed0000777.4 vs. ExPASy TrEMBL
Match: A0A6J1H4B5 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111459918 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.8e-130
Identity = 237/291 (81.44%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR +DE+E+    TET    NQKK    +SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG EDAAEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 KSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. ExPASy TrEMBL
Match: A0A5D3CBS9 (Zinc finger CCCH domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00590 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 5.4e-130
Identity = 237/298 (79.53%), Postives = 265/298 (88.93%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT + Q ++Q C FFRKPTKNKNI KR +DE+E+ DSK ET F  NQKK    ESKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK SL+ NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKNSLS-NESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKVISISGL 299
            S+DG ED++EQ DE++E ALPFAC+IC EPFVDPVVTKC HYFCEHCALKV+++S L
Sbjct: 241 KSDDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKVVALSVL 296

[Close]

BLAST of Sed0000777.4 vs. ExPASy TrEMBL
Match: A0A6J1I9H7 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111470453 PE=4 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 7.0e-130
Identity = 236/291 (81.10%), Postives = 258/291 (88.66%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR +DE+E+    TET    NQKK    +SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK +LT NESNV ESDKPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKSNLT-NESNV-ESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG ED AEQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 RSDDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. ExPASy TrEMBL
Match: A0A6J1BYC6 (zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111006576 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.7e-129
Identity = 239/292 (81.85%), Postives = 260/292 (89.04%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT ENQ  +Q C FF+KPTKNKNI KR IDE+E+ DSKTET    NQKK    ESKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTIDEDEEEDSKTETSLLLNQKKALKTESKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK SL+ NESNV ESDKPIFQFESSKEIQVHHDSKATATLE+ETEFSRDAR IRE
Sbjct: 61  FSSGPSKSSLS-NESNV-ESDKPIFQFESSKEIQVHHDSKATATLETETEFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGE-NLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAH 180
           RVLKQA+EALKGKGK++G E  LYKGVN+YVDYKAGFRRE TISSEKAGG+HGPLRASAH
Sbjct: 121 RVLKQADEALKGKGKSSGDEKKLYKGVNAYVDYKAGFRREQTISSEKAGGAHGPLRASAH 180

Query: 181 IRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLA 240
           IR S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLA
Sbjct: 181 IRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLA 240

Query: 241 MGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
           MGS++G ED AEQ DE++EDALPFAC+IC EPFVDPV+TKCKHYFCEHCALK
Sbjct: 241 MGSDEGDEDTAEQSDEDEEDALPFACFICREPFVDPVMTKCKHYFCEHCALK 290

[Close]

BLAST of Sed0000777.4 vs. ExPASy TrEMBL
Match: A0A0A0KFS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.5e-129
Identity = 235/291 (80.76%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLY 60
           MTDT + Q ++Q C FFRKPTKNKNI KR +DE+E+ DSK ET F  NQKK    ESKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRE 120
           F+SGPSK S + NESNV E +KPIFQFESSKEIQVHHDS+ATATLE+ET+FSRDAR IRE
Sbjct: 61  FSSGPSKNS-SSNESNV-EPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120

Query: 121 RVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHI 180
           RVLKQAEEALKGKGK++GGE LYKGVN+YVDYKAGFRREHTISSEKAGG+HGPLRASAHI
Sbjct: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180

Query: 181 RTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAM 240
           R S R DYQ DICKDYKETGYCGYGDACKFMHDRGDYKSGW+LE+EWEEVEK+RKRKLAM
Sbjct: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240

Query: 241 GSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
            S+DG ED +EQ DE++EDALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 241 KSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK 289

[Close]

BLAST of Sed0000777.4 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 377.9 bits (969), Expect = 7.7e-105
Identity = 190/287 (66.20%), Postives = 228/287 (79.44%), Query Frame = 0


Query: 6   ENQHTKQACRFFRKPTKNKNISKRIID-ENEDYDSKTETWFFSNQKKPTMIESKLYFASG 65
           +   ++Q C FF+KPTK+KNI KR ID + ED DSK+E+    N KK    +SKLYF+SG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLK 125
           PSK S T + +     ++ +F ++SSKEIQV +DS ATATLE+ET+F++DAR IRERVLK
Sbjct: 82  PSKSSTTTSGA----PERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLK 141

Query: 126 QAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTST 185
           +A+EALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR S 
Sbjct: 142 KADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSA 201

Query: 186 RLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSND 245
           R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RKR  AMG  D
Sbjct: 202 RFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVED 261

Query: 246 GVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
             +D A++  +EDE+ALPFAC+IC EPFVDPVVTKCKHYFCEHCALK
Sbjct: 262 -EDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALK 303

[Close]

BLAST of Sed0000777.4 vs. TAIR 10
Match: AT5G06420.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 374.8 bits (961), Expect = 6.5e-104
Identity = 190/290 (65.52%), Postives = 226/290 (77.93%), Query Frame = 0


Query: 3   DTTENQHTKQACRFFRKPTKNKNISKRIID-ENEDYDSKTETWFFSNQKKPTMIESKLYF 62
           D + NQ ++Q C FF+KPTK+KNI KR ID + ED DSK+E+    N KK    +S LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  ASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRER 122
           +SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DAR IRER
Sbjct: 117 SSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRER 176

Query: 123 VLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIR 182
           VLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR
Sbjct: 177 VLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIR 236

Query: 183 TSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMG 242
            S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RKR  AMG
Sbjct: 237 VSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMG 296

Query: 243 SNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
             D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCALK
Sbjct: 297 VEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALK 338

[Close]

BLAST of Sed0000777.4 vs. TAIR 10
Match: AT5G06420.2 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 374.8 bits (961), Expect = 6.5e-104
Identity = 190/290 (65.52%), Postives = 226/290 (77.93%), Query Frame = 0


Query: 3   DTTENQHTKQACRFFRKPTKNKNISKRIID-ENEDYDSKTETWFFSNQKKPTMIESKLYF 62
           D + NQ ++Q C FF+KPTK+KNI KR ID + ED DSK+E+    N KK    +S LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  ASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRER 122
           +SGPS        S   E  +P+F ++SSKEIQV +DS ATATLE+ET+F++DAR IRER
Sbjct: 117 SSGPS-----TRTSGAPE--RPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRER 176

Query: 123 VLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIR 182
           VLK+A+ ALKG  K A  E LYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR
Sbjct: 177 VLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIR 236

Query: 183 TSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMG 242
            S R DYQ DICKDYKETGYCGYGD+CKF+HDRGDYK GW++E+EWEE EK RKR  AMG
Sbjct: 237 VSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMG 296

Query: 243 SNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALK 292
             D  +D A++  +EDE+ALPFAC+IC EPF+DPVVTKCKHYFCEHCALK
Sbjct: 297 VEDD-DDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALK 338

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BLAST of Sed0000777.4 vs. TAIR 10
Match: AT4G01023.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-10
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 211 MHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCE 270
           + D        RLE+  ++++K   RKL        E       EED+DALP AC IC  
Sbjct: 40  VEDEDSNNESSRLEKLEKKIKKETARKL--------ETDFVLTGEEDDDALPLACSICQN 99

Query: 271 PFVDPVVTKCKHYFCEHCALK 292
           PF+DPVVT C HYFC+ CALK
Sbjct: 100 PFLDPVVTNCNHYFCDKCALK 112

The following BLAST results are available for this feature:

BLAST of Sed0000777.4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958735.1	3.8e-130	81.44	zinc finger CCCH domain-containing protein 1 [Cucurbita moschata]	[more]
KAA0055485.1	1.1e-129	79.53	zinc finger CCCH domain-containing protein 1 [Cucumis melo var. makuwa] >TYK0896...	[more]
XP_023548600.1	1.4e-129	81.10	zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022971769.1	1.4e-129	81.10	zinc finger CCCH domain-containing protein 1 [Cucurbita maxima]	[more]
KAG6601808.1	1.4e-129	81.10	Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma su...	[more]

BLAST of Sed0000777.4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GX84	1.1e-103	66.20	Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FNG6	9.2e-103	65.52	Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6K4V3	2.6e-89	60.28	Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX...	[more]
O15541	1.6e-38	41.53	E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1	[more]
O17917	1.6e-38	36.49	Probable E3 ubiquitin-protein ligase rnf113 OS=Caenorhabditis elegans OX=6239 GN...	[more]

BLAST of Sed0000777.4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4B5	1.8e-130	81.44	zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5D3CBS9	5.4e-130	79.53	Zinc finger CCCH domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1I9H7	7.0e-130	81.10	zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1BYC6	2.7e-129	81.85	zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KFS0	4.5e-129	80.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1	[more]

BLAST of Sed0000777.4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01350.1	7.7e-105	66.20	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.1	6.5e-104	65.52	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.2	6.5e-104	65.52	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT4G01023.1	1.4e-10	44.44	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 187..214 e-value: 8.8E-7 score: 38.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 188..213 e-value: 3.4E-10 score: 39.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 187..215 score: 14.746146
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 265..294 e-value: 1.6E-5 score: 24.6
None	No IPR available	GENE3D	4.10.1000.10		coord: 181..218 e-value: 9.7E-7 score: 30.1
None	No IPR available	PANTHER	PTHR12930:SF9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 1..292
None	No IPR available	CDD	cd16539	RING-HC_RNF113A_B	coord: 263..291 e-value: 4.42841E-15 score: 66.0999
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 264..296
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 219..297 e-value: 3.8E-10 score: 41.4
IPR039971	Pre-mRNA-splicing factor CWC24-like	PANTHER	PTHR12930	ZINC FINGER PROTEIN 183	coord: 1..292
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 185..218

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000777	Sed0000777	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.4-five_prime_utr	Sed0000777.4-five_prime_utr-LG04:3659221..3659590	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.4-exon	Sed0000777.4-exon-LG04:3659221..3659627	exon
Sed0000777.4-exon	Sed0000777.4-exon-LG04:3659798..3661870	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.4-cds	Sed0000777.4-cds-LG04:3659591..3659627	CDS
Sed0000777.4-cds	Sed0000777.4-cds-LG04:3659798..3660660	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000777.4-three_prime_utr	Sed0000777.4-three_prime_utr-LG04:3660661..3661870	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000777.4	Sed0000777.4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034247	snoRNA splicing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding