Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAGTTGAGTCCTTTGGAGGATGAGGTAGTGAAACCTTCAAAGATAAGGAAGGTCACAATAAAGAAGAAAATTTTTAGGGAACAAGTCGCCAAGAGGCGAGAAGAGAAGGCAAGGAAGAAGGGTCTTAAGGATGAAGTAGCGCATGATGAAGAAGAGGACCAAAAAGGCCACACAGATGAGCCTCTCACCACCAAAACTATCAGTAAGCACTTTAAGGATTGGGAGATGCACAATAATATAATTCGTACCACTTGTAATTTTATTTTGATACGCATTATTCTAACAAACCTAGGATTGAACCTATTGAATGTCAATTAGACGTATGGCAATTAGGCATTCCACCTAAGGATCTCTAGAACTTAATGCTATTGGAAAATTCAATATTGCATGTGTTAATCGTATTGGGTTAGAATGATTAGAACCTTGGGACAATTTAATTGGTCTTTCCAATTAATTCGGTTAGGTGAATATTGCATATAGAAAGGTAATGATAGCTCGATTAATGAATTCTTTAGATAAGGGAGAAATTGTTATGAGCCAAGCTAGATTCTTTTGACAATAGAACTTTCTTCGATTTACTGTTTCTATCTGCAATTTTCTTTCTTGCCTACAATTTAAAACCCTACATTCGGTTACGTGGTTGAAAATTAGTTTGTTTGAGAATTAGTGTGCTTCTTTTAATCGACCTAGACTTGCCATTAAGACTAGTGCTTTGTGAGTGAATTCAGTTAATTATTTGGCACTGGTCTGGACGACAAAACCTGTCCCACCAAATTGACACAGTTGTTGGGGAGCGCATAGATTTCTCTTGCAAAAGAGTTTTCTTCCTTTTTATTGTTCTTTATTTTTCTCTTCTTTTTTATGACTCAATCCTCCTAGGATCGAAATTTGTTGTTGTATTTTGCCGATCTTGGTCAGGAGGAAAGGAAAAGAAGAAGAGAGGTTAGAGAGCAAAGAGCTCTTCAGAAGGACATTTGTGCTGAAGGCACGTTTAAAAAAGAACTTCTAAAGCAGAAAGTTGAGAGCATGGTGGATCCTATGCCAGAGCGAACCTTGAAGGATCTAGCTGACCCTGACTTTAGCCAGTAGTCCCTTCGCATTACCTATCCTGAGACGATAGGTAAATTTGAACTTAAAACTAGGTTAATTCACTTACTATCTGTTTTTCATGGATTTGCAGGTGAAGACCCTACAAGTTCATGAAGGAGTTCCATGTAGTTTGTAGCAGCATGAGGCCACATAGAGTAACTGAAGAGCAGCTGAACCTCAGAACCTTCCCCTTGGCCTTGAAGGATAATGCTAATGATTGACTATTTATTCTCCTTGTAAGATATGTGACCACCTGGGCCCAGATGAAGAAGATTTATGGCATCACAAGTAAATGGTGAGAAACTGCATGAGTACTGGAAGCGTTTCTATTACCTTTGCAACAATTTTCCACACCATCAAATTTATGAGGTGCTCCTGATTTAGTACTTCTATAAAGGACTTGTCTCCAATGATAGAAGTACGATAGATGTAGCTGCGAGAGGAGCCTTGATGAACAAAACTCCTTTAGAGACTCGGGCACTGATTTCCACCATGGCTACTAATGCCAAACAGTTCAGGAATAGAGATTGA
mRNA sequence
ATGGAACAGTTGAGTCCTTTGGAGGATGAGGTAGTGAAACCTTCAAAGATAAGGAAGGTCACAATAAAGAAGAAAATTTTTAGGGAACAAGTCGCCAAGAGGCGAGAAGAGAAGGCAAGGAAGAAGGGTCTTAAGGATGAAGTAGCGCATGATGAAGAAGAGGACCAAAAAGGCCACACAGATGAGCCTCTCACCACCAAAACTATCAGACTTGTCTCCAATGATAGAAGTACGATAGATGTAGCTGCGAGAGGAGCCTTGATGAACAAAACTCCTTTAGAGACTCGGGCACTGATTTCCACCATGGCTACTAATGCCAAACAGTTCAGGAATAGAGATTGA
Coding sequence (CDS)
ATGGAACAGTTGAGTCCTTTGGAGGATGAGGTAGTGAAACCTTCAAAGATAAGGAAGGTCACAATAAAGAAGAAAATTTTTAGGGAACAAGTCGCCAAGAGGCGAGAAGAGAAGGCAAGGAAGAAGGGTCTTAAGGATGAAGTAGCGCATGATGAAGAAGAGGACCAAAAAGGCCACACAGATGAGCCTCTCACCACCAAAACTATCAGACTTGTCTCCAATGATAGAAGTACGATAGATGTAGCTGCGAGAGGAGCCTTGATGAACAAAACTCCTTTAGAGACTCGGGCACTGATTTCCACCATGGCTACTAATGCCAAACAGTTCAGGAATAGAGATTGA
Protein sequence
MEQLSPLEDEVVKPSKIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGHTDEPLTTKTIRLVSNDRSTIDVAARGALMNKTPLETRALISTMATNAKQFRNRD
Homology
BLAST of PI0017050 vs. ExPASy TrEMBL
Match:
A0A5D3E4B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00860 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0
Query: 1 MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
++ LSPL+DEVVK S K +KVTIKK + +EQ KRREEK +KKG EV +EEED KG
Sbjct: 36 LDNLSPLKDEVVKSSKKKKKVTIKKSVLKEQFIKRREEKEKKKGPLSEVTLEEEEDLKGE 95
Query: 61 TDEPLTTKTI 70
+EP TI
Sbjct: 96 KNEPFCGNTI 105
BLAST of PI0017050 vs. ExPASy TrEMBL
Match:
A0A5A7SVU7 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00220 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 0
Query: 1 MEQLSPLEDEVVKPSKIR-KVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
+E+LSPLEDEVVKPSK + KVTIKK++ REQ AK+REE ++ +EV +++ DQ+G
Sbjct: 88 LEELSPLEDEVVKPSKTKSKVTIKKQVLREQFAKKREENEKRGPRNEEVQEEKKGDQEGE 147
Query: 61 TDE 63
T+E
Sbjct: 148 TEE 150
BLAST of PI0017050 vs. ExPASy TrEMBL
Match:
A0A5A7T4G8 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001100 PE=4 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0
Query: 1 MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
++ LS LEDE+V S K +KVTIKK + +EQ KRREEK +KKG EV +EEED KG
Sbjct: 47 LDNLSHLEDEMVNSSKKKKKVTIKKSVLKEQFVKRREEKEKKKGPLSEVTLEEEEDLKGE 106
Query: 61 TDEPLTTKTI 70
+EP TI
Sbjct: 107 KNEPFCGNTI 116
BLAST of PI0017050 vs. NCBI nr
Match:
TYK30659.1 (hypothetical protein E5676_scaffold84664G00860 [Cucumis melo var. makuwa])
HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0
Query: 1 MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
++ LSPL+DEVVK S K +KVTIKK + +EQ KRREEK +KKG EV +EEED KG
Sbjct: 36 LDNLSPLKDEVVKSSKKKKKVTIKKSVLKEQFIKRREEKEKKKGPLSEVTLEEEEDLKGE 95
Query: 61 TDEPLTTKTI 70
+EP TI
Sbjct: 96 KNEPFCGNTI 105
BLAST of PI0017050 vs. NCBI nr
Match:
KAA0035382.1 (gag-protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 0
Query: 1 MEQLSPLEDEVVKPSKIR-KVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
+E+LSPLEDEVVKPSK + KVTIKK++ REQ AK+REE ++ +EV +++ DQ+G
Sbjct: 88 LEELSPLEDEVVKPSKTKSKVTIKKQVLREQFAKKREENEKRGPRNEEVQEEKKGDQEGE 147
Query: 61 TDE 63
T+E
Sbjct: 148 TEE 150
BLAST of PI0017050 vs. NCBI nr
Match:
KAA0038260.1 (protein MNN4-like [Cucumis melo var. makuwa])
HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0
Query: 1 MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
++ LS LEDE+V S K +KVTIKK + +EQ KRREEK +KKG EV +EEED KG
Sbjct: 47 LDNLSHLEDEMVNSSKKKKKVTIKKSVLKEQFVKRREEKEKKKGPLSEVTLEEEEDLKGE 106
Query: 61 TDEPLTTKTI 70
+EP TI
Sbjct: 107 KNEPFCGNTI 116
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3E4B8 | 1.1e-06 | 57.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7SVU7 | 1.2e-05 | 55.56 | Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
| A0A5A7T4G8 | 2.7e-05 | 54.29 | Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK30659.1 | 2.2e-06 | 57.14 | hypothetical protein E5676_scaffold84664G00860 [Cucumis melo var. makuwa] | [more] |
| KAA0035382.1 | 2.5e-05 | 55.56 | gag-protease polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0038260.1 | 5.5e-05 | 54.29 | protein MNN4-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
