PI0017050.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0017050.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-protease polyprotein
Location	chr09: 11221849 .. 11223474 (+)
Sequence length	342
RNA-Seq Expression	PI0017050.1
Synteny	PI0017050.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAGTTGAGTCCTTTGGAGGATGAGGTAGTGAAACCTTCAAAGATAAGGAAGGTCACAATAAAGAAGAAAATTTTTAGGGAACAAGTCGCCAAGAGGCGAGAAGAGAAGGCAAGGAAGAAGGGTCTTAAGGATGAAGTAGCGCATGATGAAGAAGAGGACCAAAAAGGCCACACAGATGAGCCTCTCACCACCAAAACTATCAGTAAGCACTTTAAGGATTGGGAGATGCACAATAATATAATTCGTACCACTTGTAATTTTATTTTGATACGCATTATTCTAACAAACCTAGGATTGAACCTATTGAATGTCAATTAGACGTATGGCAATTAGGCATTCCACCTAAGGATCTCTAGAACTTAATGCTATTGGAAAATTCAATATTGCATGTGTTAATCGTATTGGGTTAGAATGATTAGAACCTTGGGACAATTTAATTGGTCTTTCCAATTAATTCGGTTAGGTGAATATTGCATATAGAAAGGTAATGATAGCTCGATTAATGAATTCTTTAGATAAGGGAGAAATTGTTATGAGCCAAGCTAGATTCTTTTGACAATAGAACTTTCTTCGATTTACTGTTTCTATCTGCAATTTTCTTTCTTGCCTACAATTTAAAACCCTACATTCGGTTACGTGGTTGAAAATTAGTTTGTTTGAGAATTAGTGTGCTTCTTTTAATCGACCTAGACTTGCCATTAAGACTAGTGCTTTGTGAGTGAATTCAGTTAATTATTTGGCACTGGTCTGGACGACAAAACCTGTCCCACCAAATTGACACAGTTGTTGGGGAGCGCATAGATTTCTCTTGCAAAAGAGTTTTCTTCCTTTTTATTGTTCTTTATTTTTCTCTTCTTTTTTATGACTCAATCCTCCTAGGATCGAAATTTGTTGTTGTATTTTGCCGATCTTGGTCAGGAGGAAAGGAAAAGAAGAAGAGAGGTTAGAGAGCAAAGAGCTCTTCAGAAGGACATTTGTGCTGAAGGCACGTTTAAAAAAGAACTTCTAAAGCAGAAAGTTGAGAGCATGGTGGATCCTATGCCAGAGCGAACCTTGAAGGATCTAGCTGACCCTGACTTTAGCCAGTAGTCCCTTCGCATTACCTATCCTGAGACGATAGGTAAATTTGAACTTAAAACTAGGTTAATTCACTTACTATCTGTTTTTCATGGATTTGCAGGTGAAGACCCTACAAGTTCATGAAGGAGTTCCATGTAGTTTGTAGCAGCATGAGGCCACATAGAGTAACTGAAGAGCAGCTGAACCTCAGAACCTTCCCCTTGGCCTTGAAGGATAATGCTAATGATTGACTATTTATTCTCCTTGTAAGATATGTGACCACCTGGGCCCAGATGAAGAAGATTTATGGCATCACAAGTAAATGGTGAGAAACTGCATGAGTACTGGAAGCGTTTCTATTACCTTTGCAACAATTTTCCACACCATCAAATTTATGAGGTGCTCCTGATTTAGTACTTCTATAAAGGACTTGTCTCCAATGATAGAAGTACGATAGATGTAGCTGCGAGAGGAGCCTTGATGAACAAAACTCCTTTAGAGACTCGGGCACTGATTTCCACCATGGCTACTAATGCCAAACAGTTCAGGAATAGAGATTGA

mRNA sequence

ATGGAACAGTTGAGTCCTTTGGAGGATGAGGTAGTGAAACCTTCAAAGATAAGGAAGGTCACAATAAAGAAGAAAATTTTTAGGGAACAAGTCGCCAAGAGGCGAGAAGAGAAGGCAAGGAAGAAGGGTCTTAAGGATGAAGTAGCGCATGATGAAGAAGAGGACCAAAAAGGCCACACAGATGAGCCTCTCACCACCAAAACTATCAGACTTGTCTCCAATGATAGAAGTACGATAGATGTAGCTGCGAGAGGAGCCTTGATGAACAAAACTCCTTTAGAGACTCGGGCACTGATTTCCACCATGGCTACTAATGCCAAACAGTTCAGGAATAGAGATTGA

Coding sequence (CDS)

ATGGAACAGTTGAGTCCTTTGGAGGATGAGGTAGTGAAACCTTCAAAGATAAGGAAGGTCACAATAAAGAAGAAAATTTTTAGGGAACAAGTCGCCAAGAGGCGAGAAGAGAAGGCAAGGAAGAAGGGTCTTAAGGATGAAGTAGCGCATGATGAAGAAGAGGACCAAAAAGGCCACACAGATGAGCCTCTCACCACCAAAACTATCAGACTTGTCTCCAATGATAGAAGTACGATAGATGTAGCTGCGAGAGGAGCCTTGATGAACAAAACTCCTTTAGAGACTCGGGCACTGATTTCCACCATGGCTACTAATGCCAAACAGTTCAGGAATAGAGATTGA

Protein sequence

MEQLSPLEDEVVKPSKIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGHTDEPLTTKTIRLVSNDRSTIDVAARGALMNKTPLETRALISTMATNAKQFRNRD

Homology

[Close]

BLAST of PI0017050.1 vs. ExPASy TrEMBL
Match: A0A5D3E4B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00860 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1   MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
           ++ LSPL+DEVVK S K +KVTIKK + +EQ  KRREEK +KKG   EV  +EEED KG 
Sbjct: 36  LDNLSPLKDEVVKSSKKKKKVTIKKSVLKEQFIKRREEKEKKKGPLSEVTLEEEEDLKGE 95

Query: 61  TDEPLTTKTI 70
            +EP    TI
Sbjct: 96  KNEPFCGNTI 105

[Close]

BLAST of PI0017050.1 vs. ExPASy TrEMBL
Match: A0A5A7SVU7 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00220 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   MEQLSPLEDEVVKPSKIR-KVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
           +E+LSPLEDEVVKPSK + KVTIKK++ REQ AK+REE  ++    +EV  +++ DQ+G 
Sbjct: 88  LEELSPLEDEVVKPSKTKSKVTIKKQVLREQFAKKREENEKRGPRNEEVQEEKKGDQEGE 147

Query: 61  TDE 63
           T+E
Sbjct: 148 TEE 150

[Close]

BLAST of PI0017050.1 vs. ExPASy TrEMBL
Match: A0A5A7T4G8 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001100 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
           ++ LS LEDE+V  S K +KVTIKK + +EQ  KRREEK +KKG   EV  +EEED KG 
Sbjct: 47  LDNLSHLEDEMVNSSKKKKKVTIKKSVLKEQFVKRREEKEKKKGPLSEVTLEEEEDLKGE 106

Query: 61  TDEPLTTKTI 70
            +EP    TI
Sbjct: 107 KNEPFCGNTI 116

[Close]

BLAST of PI0017050.1 vs. NCBI nr
Match: TYK30659.1 (hypothetical protein E5676_scaffold84664G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1   MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
           ++ LSPL+DEVVK S K +KVTIKK + +EQ  KRREEK +KKG   EV  +EEED KG 
Sbjct: 36  LDNLSPLKDEVVKSSKKKKKVTIKKSVLKEQFIKRREEKEKKKGPLSEVTLEEEEDLKGE 95

Query: 61  TDEPLTTKTI 70
            +EP    TI
Sbjct: 96  KNEPFCGNTI 105

[Close]

BLAST of PI0017050.1 vs. NCBI nr
Match: KAA0035382.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   MEQLSPLEDEVVKPSKIR-KVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
           +E+LSPLEDEVVKPSK + KVTIKK++ REQ AK+REE  ++    +EV  +++ DQ+G 
Sbjct: 88  LEELSPLEDEVVKPSKTKSKVTIKKQVLREQFAKKREENEKRGPRNEEVQEEKKGDQEGE 147

Query: 61  TDE 63
           T+E
Sbjct: 148 TEE 150

[Close]

BLAST of PI0017050.1 vs. NCBI nr
Match: KAA0038260.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MEQLSPLEDEVVKPS-KIRKVTIKKKIFREQVAKRREEKARKKGLKDEVAHDEEEDQKGH 60
           ++ LS LEDE+V  S K +KVTIKK + +EQ  KRREEK +KKG   EV  +EEED KG 
Sbjct: 47  LDNLSHLEDEMVNSSKKKKKVTIKKSVLKEQFVKRREEKEKKKGPLSEVTLEEEEDLKGE 106

Query: 61  TDEPLTTKTI 70
            +EP    TI
Sbjct: 107 KNEPFCGNTI 116

The following BLAST results are available for this feature:

BLAST of PI0017050.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017050.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4B8	1.1e-06	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SVU7	1.2e-05	55.56	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7T4G8	2.7e-05	54.29	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00...	[more]

BLAST of PI0017050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30659.1	2.2e-06	57.14	hypothetical protein E5676_scaffold84664G00860 [Cucumis melo var. makuwa]	[more]
KAA0035382.1	2.5e-05	55.56	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038260.1	5.5e-05	54.29	protein MNN4-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0017050.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0017050	PI0017050	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0017050.1-exon	PI0017050.1-exon-chr09:11221849..11222056	exon
PI0017050.1-exon	PI0017050.1-exon-chr09:11223341..11223474	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0017050.1-cds	PI0017050.1-cds-chr09:11221849..11222056	CDS
PI0017050.1-cds	PI0017050.1-cds-chr09:11223341..11223474	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0017050.1	PI0017050.1-protein	polypeptide