Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATGATCTAGAGAATGCGACCCTAGTTCCTGTTGGGCCGCAAGAAAAAGAAGTCTTTGAGGAGCTGGTTGATGACCCAATCCCCAAAGGTAAGGAAATCGCTTTTAAGGAAGCAAGCAAGACACGTGCTCCCTCGTCGCCTAAACAAACACACGACCAGCCAAGCAATGCGGCATACGAAATTGAGGATGATGATTACTACAAGTTCATCAGCGATACAATTGTAAAACCAATGAGGGATGGACTTGAAGATATTTTTCAAACCCAAGCAGATATGCAAGAATGCGCGATGAGACATGAGAAGTAG
mRNA sequence
ATGACAAATGATCTAGAGAATGCGACCCTAGTTCCTGTTGGGCCGCAAGAAAAAGAAGTCTTTGAGGAGCTGGTTGATGACCCAATCCCCAAAGGTAAGGAAATCGCTTTTAAGGAAGCAAGCAAGACACGTGCTCCCTCGTCGCCTAAACAAACACACGACCAGCCAAGCAATGCGGCATACGAAATTGAGGATGATGATTACTACAAGTTCATCAGCGATACAATTGTAAAACCAATGAGGGATGGACTTGAAGATATTTTTCAAACCCAAGCAGATATGCAAGAATGCGCGATGAGACATGAGAAGTAG
Coding sequence (CDS)
ATGACAAATGATCTAGAGAATGCGACCCTAGTTCCTGTTGGGCCGCAAGAAAAAGAAGTCTTTGAGGAGCTGGTTGATGACCCAATCCCCAAAGGTAAGGAAATCGCTTTTAAGGAAGCAAGCAAGACACGTGCTCCCTCGTCGCCTAAACAAACACACGACCAGCCAAGCAATGCGGCATACGAAATTGAGGATGATGATTACTACAAGTTCATCAGCGATACAATTGTAAAACCAATGAGGGATGGACTTGAAGATATTTTTCAAACCCAAGCAGATATGCAAGAATGCGCGATGAGACATGAGAAGTAG
Protein sequence
MTNDLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEIEDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK
Homology
BLAST of PI0011639 vs. ExPASy TrEMBL
Match:
A0A5D3D8Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00610 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 7.3e-18
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query: 4 DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
+LE+ +LVPVG KEV E++VDDP+ KGK I K AS+T PS PK+T Q A
Sbjct: 24 NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83
Query: 64 EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
E D+Y+KFI + KPMRDG ED+FQ QA+ QE +R EK
Sbjct: 84 EKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123
BLAST of PI0011639 vs. ExPASy TrEMBL
Match:
A0A5A7T7V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001610 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query: 4 DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
+LE+ +LVPVG KEV E++VDDP+ KGK I K AS+T PS PK+T Q A
Sbjct: 24 NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83
Query: 64 EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
+ D+Y+KFI + KPMRDG ED+FQ QA+ QE +R +K
Sbjct: 84 DKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123
BLAST of PI0011639 vs. ExPASy TrEMBL
Match:
A0A5D3DK59 (Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0
Query: 5 LENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEIE 64
+E ATL G K+V EE VDD + KGK+IA+++ + PS KQT++Q N E +
Sbjct: 41 VEEATLEKWG-VTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESD 100
Query: 65 DDD-YYKFISDTIVKPMRDGLEDIFQTQADMQEC 98
D+D Y+KFISDT KPM D LEDIFQ Q+D+QEC
Sbjct: 101 DEDQYFKFISDTFGKPMMDELEDIFQIQSDLQEC 133
BLAST of PI0011639 vs. ExPASy TrEMBL
Match:
A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0
Query: 6 ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
EN TL V K + E+ +DDP+ K K++ ++ASKTR PS PKQ+ D A
Sbjct: 74 ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 133
Query: 66 YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
+DDD Y+KFI++ + +P+R G ED+FQ QA++QE ++++K
Sbjct: 134 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 179
BLAST of PI0011639 vs. ExPASy TrEMBL
Match:
A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0
Query: 6 ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
EN TL V K + E+ +DDP+ K K++ ++ASKTR PS PKQ+ D A
Sbjct: 119 ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 178
Query: 66 YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
+DDD Y+KFI++ + +P+R G ED+FQ QA++QE ++++K
Sbjct: 179 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 224
BLAST of PI0011639 vs. NCBI nr
Match:
TYK19850.1 (hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa])
HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query: 4 DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
+LE+ +LVPVG KEV E++VDDP+ KGK I K AS+T PS PK+T Q A
Sbjct: 24 NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83
Query: 64 EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
E D+Y+KFI + KPMRDG ED+FQ QA+ QE +R EK
Sbjct: 84 EKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123
BLAST of PI0011639 vs. NCBI nr
Match:
KAA0038296.1 (hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa])
HSP 1 Score: 97.4 bits (241), Expect = 7.4e-17
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query: 4 DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
+LE+ +LVPVG KEV E++VDDP+ KGK I K AS+T PS PK+T Q A
Sbjct: 24 NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83
Query: 64 EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
+ D+Y+KFI + KPMRDG ED+FQ QA+ QE +R +K
Sbjct: 84 DKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123
BLAST of PI0011639 vs. NCBI nr
Match:
TYK23898.1 (gag-pol [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0
Query: 5 LENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEIE 64
+E ATL G K+V EE VDD + KGK+IA+++ + PS KQT++Q N E +
Sbjct: 41 VEEATLEKWG-VTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESD 100
Query: 65 DDD-YYKFISDTIVKPMRDGLEDIFQTQADMQEC 98
D+D Y+KFISDT KPM D LEDIFQ Q+D+QEC
Sbjct: 101 DEDQYFKFISDTFGKPMMDELEDIFQIQSDLQEC 133
BLAST of PI0011639 vs. NCBI nr
Match:
TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0
Query: 6 ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
EN TL V K + E+ +DDP+ K K++ ++ASKTR PS PKQ+ D A
Sbjct: 74 ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 133
Query: 66 YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
+DDD Y+KFI++ + +P+R G ED+FQ QA++QE ++++K
Sbjct: 134 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 179
BLAST of PI0011639 vs. NCBI nr
Match:
KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0
Query: 6 ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
EN TL V K + E+ +DDP+ K K++ ++ASKTR PS PKQ+ D A
Sbjct: 119 ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 178
Query: 66 YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
+DDD Y+KFI++ + +P+R G ED+FQ QA++QE ++++K
Sbjct: 179 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 224
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D8Q5 | 7.3e-18 | 53.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7T7V1 | 3.6e-17 | 51.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DK59 | 1.1e-13 | 52.13 | Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 S... | [more] |
| A0A5D3E1H0 | 1.3e-11 | 40.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7TJU0 | 1.3e-11 | 40.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK19850.1 | 1.5e-17 | 53.00 | hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa] | [more] |
| KAA0038296.1 | 7.4e-17 | 51.00 | hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa] | [more] |
| TYK23898.1 | 2.2e-13 | 52.13 | gag-pol [Cucumis melo var. makuwa] | [more] |
| TYK29776.1 | 2.7e-11 | 40.57 | hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa] | [more] |
| KAA0043584.1 | 2.7e-11 | 40.57 | hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
