PI0011639.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0011639.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr06: 13650260 .. 13650571 (+)
Sequence length	312
RNA-Seq Expression	PI0011639.1
Synteny	PI0011639.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATGATCTAGAGAATGCGACCCTAGTTCCTGTTGGGCCGCAAGAAAAAGAAGTCTTTGAGGAGCTGGTTGATGACCCAATCCCCAAAGGTAAGGAAATCGCTTTTAAGGAAGCAAGCAAGACACGTGCTCCCTCGTCGCCTAAACAAACACACGACCAGCCAAGCAATGCGGCATACGAAATTGAGGATGATGATTACTACAAGTTCATCAGCGATACAATTGTAAAACCAATGAGGGATGGACTTGAAGATATTTTTCAAACCCAAGCAGATATGCAAGAATGCGCGATGAGACATGAGAAGTAG

mRNA sequence

ATGACAAATGATCTAGAGAATGCGACCCTAGTTCCTGTTGGGCCGCAAGAAAAAGAAGTCTTTGAGGAGCTGGTTGATGACCCAATCCCCAAAGGTAAGGAAATCGCTTTTAAGGAAGCAAGCAAGACACGTGCTCCCTCGTCGCCTAAACAAACACACGACCAGCCAAGCAATGCGGCATACGAAATTGAGGATGATGATTACTACAAGTTCATCAGCGATACAATTGTAAAACCAATGAGGGATGGACTTGAAGATATTTTTCAAACCCAAGCAGATATGCAAGAATGCGCGATGAGACATGAGAAGTAG

Coding sequence (CDS)

ATGACAAATGATCTAGAGAATGCGACCCTAGTTCCTGTTGGGCCGCAAGAAAAAGAAGTCTTTGAGGAGCTGGTTGATGACCCAATCCCCAAAGGTAAGGAAATCGCTTTTAAGGAAGCAAGCAAGACACGTGCTCCCTCGTCGCCTAAACAAACACACGACCAGCCAAGCAATGCGGCATACGAAATTGAGGATGATGATTACTACAAGTTCATCAGCGATACAATTGTAAAACCAATGAGGGATGGACTTGAAGATATTTTTCAAACCCAAGCAGATATGCAAGAATGCGCGATGAGACATGAGAAGTAG

Protein sequence

MTNDLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEIEDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK

Homology

[Close]

BLAST of PI0011639.1 vs. ExPASy TrEMBL
Match: A0A5D3D8Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00610 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.3e-18
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
           +LE+ +LVPVG   KEV E++VDDP+ KGK I  K AS+T  PS PK+T  Q   A    
Sbjct: 24  NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83

Query: 64  EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
           E D+Y+KFI +   KPMRDG ED+FQ QA+ QE  +R EK
Sbjct: 84  EKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123

[Close]

BLAST of PI0011639.1 vs. ExPASy TrEMBL
Match: A0A5A7T7V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001610 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
           +LE+ +LVPVG   KEV E++VDDP+ KGK I  K AS+T  PS PK+T  Q   A    
Sbjct: 24  NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83

Query: 64  EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
           + D+Y+KFI +   KPMRDG ED+FQ QA+ QE  +R +K
Sbjct: 84  DKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123

[Close]

BLAST of PI0011639.1 vs. ExPASy TrEMBL
Match: A0A5D3DK59 (Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 5   LENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEIE 64
           +E ATL   G   K+V EE VDD + KGK+IA+++  +   PS  KQT++Q  N   E +
Sbjct: 41  VEEATLEKWG-VTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESD 100

Query: 65  DDD-YYKFISDTIVKPMRDGLEDIFQTQADMQEC 98
           D+D Y+KFISDT  KPM D LEDIFQ Q+D+QEC
Sbjct: 101 DEDQYFKFISDTFGKPMMDELEDIFQIQSDLQEC 133

[Close]

BLAST of PI0011639.1 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 6   ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
           EN TL  V    K + E+ +DDP+ K K++  ++ASKTR PS PKQ+      D     A
Sbjct: 74  ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 133

Query: 66  YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
              +DDD   Y+KFI++ + +P+R G ED+FQ QA++QE  ++++K
Sbjct: 134 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 179

[Close]

BLAST of PI0011639.1 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 6   ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
           EN TL  V    K + E+ +DDP+ K K++  ++ASKTR PS PKQ+      D     A
Sbjct: 119 ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 178

Query: 66  YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
              +DDD   Y+KFI++ + +P+R G ED+FQ QA++QE  ++++K
Sbjct: 179 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 224

[Close]

BLAST of PI0011639.1 vs. NCBI nr
Match: TYK19850.1 (hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
           +LE+ +LVPVG   KEV E++VDDP+ KGK I  K AS+T  PS PK+T  Q   A    
Sbjct: 24  NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83

Query: 64  EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
           E D+Y+KFI +   KPMRDG ED+FQ QA+ QE  +R EK
Sbjct: 84  EKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123

[Close]

BLAST of PI0011639.1 vs. NCBI nr
Match: KAA0038296.1 (hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-17
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   DLENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEI 63
           +LE+ +LVPVG   KEV E++VDDP+ KGK I  K AS+T  PS PK+T  Q   A    
Sbjct: 24  NLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPKETSKQHDTAKESD 83

Query: 64  EDDDYYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
           + D+Y+KFI +   KPMRDG ED+FQ QA+ QE  +R +K
Sbjct: 84  DKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123

[Close]

BLAST of PI0011639.1 vs. NCBI nr
Match: TYK23898.1 (gag-pol [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 5   LENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQTHDQPSNAAYEIE 64
           +E ATL   G   K+V EE VDD + KGK+IA+++  +   PS  KQT++Q  N   E +
Sbjct: 41  VEEATLEKWG-VTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESD 100

Query: 65  DDD-YYKFISDTIVKPMRDGLEDIFQTQADMQEC 98
           D+D Y+KFISDT  KPM D LEDIFQ Q+D+QEC
Sbjct: 101 DEDQYFKFISDTFGKPMMDELEDIFQIQSDLQEC 133

[Close]

BLAST of PI0011639.1 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 6   ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
           EN TL  V    K + E+ +DDP+ K K++  ++ASKTR PS PKQ+      D     A
Sbjct: 74  ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 133

Query: 66  YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
              +DDD   Y+KFI++ + +P+R G ED+FQ QA++QE  ++++K
Sbjct: 134 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 179

[Close]

BLAST of PI0011639.1 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 6   ENATLVPVGPQEKEVFEELVDDPIPKGKEIAFKEASKTRAPSSPKQT-----HDQPSNAA 65
           EN TL  V    K + E+ +DDP+ K K++  ++ASKTR PS PKQ+      D     A
Sbjct: 119 ENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQKEA 178

Query: 66  YEIEDDD---YYKFISDTIVKPMRDGLEDIFQTQADMQECAMRHEK 104
              +DDD   Y+KFI++ + +P+R G ED+FQ QA++QE  ++++K
Sbjct: 179 IRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQK 224

The following BLAST results are available for this feature:

BLAST of PI0011639.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011639.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8Q5	7.3e-18	53.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T7V1	3.6e-17	51.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DK59	1.1e-13	52.13	Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 S...	[more]
A0A5D3E1H0	1.3e-11	40.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	1.3e-11	40.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0011639.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19850.1	1.5e-17	53.00	hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa]	[more]
KAA0038296.1	7.4e-17	51.00	hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa]	[more]
TYK23898.1	2.2e-13	52.13	gag-pol [Cucumis melo var. makuwa]	[more]
TYK29776.1	2.7e-11	40.57	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]
KAA0043584.1	2.7e-11	40.57	hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]	[more]

BLAST of PI0011639.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0011639	PI0011639	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011639.1-exon	PI0011639.1-exon-chr06:13650260..13650571	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011639.1-cds	PI0011639.1-cds-chr06:13650260..13650571	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0011639.1	PI0011639.1-protein	polypeptide