Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGAAACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGA
mRNA sequence
ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGAAACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGA
Coding sequence (CDS)
ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGAAACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGA
Protein sequence
MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAYVCASTIVH
Homology
BLAST of PI0008844 vs. ExPASy TrEMBL
Match:
A0A5A7V6G0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43900G00020 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+SL E VPKDILCVLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 326 MAIPLESLENPGETVPKDILCVLEKYSDVMPDSLPKSLPPRRMIDHEIELLPGAKPPAKN 385
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA ++++
Sbjct: 386 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGAPVLFQKKK 427
BLAST of PI0008844 vs. ExPASy TrEMBL
Match:
A0A5A7UQ20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00360 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+SL E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+P AKPPAKN
Sbjct: 517 MAIPLNSLENSGETVPKEIIRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPEAKPPAKN 576
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
AYRMAPPELAEL KQLDELL+AGFIRPAKAPYGA FS+RR+M Y
Sbjct: 577 AYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVFSRRRKMGVY 622
BLAST of PI0008844 vs. ExPASy TrEMBL
Match:
A0A5D3DQI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00420 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+S E VPK+I+ VLEKY DVM SLPK+LPPRRMIDHEIEL+PGAK PAKN
Sbjct: 67 MAIPLNSSENSGETVPKEIMRVLEKYRDVMLDSLPKSLPPRRMIDHEIELVPGAKLPAKN 126
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
AYRMAPPELAELRKQLDELL+AGFIRPAKAPYG + FS+RR+M Y
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGPQFFSRRRKMGVY 172
BLAST of PI0008844 vs. ExPASy TrEMBL
Match:
A0A5D3BQ68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00760 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+S E VPK+I+ VLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 67 MAIPLNSSENSRETVPKEIVRVLEKYHDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 126
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA 95
AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGA 160
BLAST of PI0008844 vs. ExPASy TrEMBL
Match:
A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL S E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA +R++
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712
BLAST of PI0008844 vs. NCBI nr
Match:
KAA0062527.1 (uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 171.0 bits (432), Expect = 5.9e-39
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+SL E VPKDILCVLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 326 MAIPLESLENPGETVPKDILCVLEKYSDVMPDSLPKSLPPRRMIDHEIELLPGAKPPAKN 385
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA ++++
Sbjct: 386 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGAPVLFQKKK 427
BLAST of PI0008844 vs. NCBI nr
Match:
KAA0055559.1 (uncharacterized protein E6C27_scaffold222G00360 [Cucumis melo var. makuwa])
HSP 1 Score: 167.9 bits (424), Expect = 5.0e-38
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+SL E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+P AKPPAKN
Sbjct: 517 MAIPLNSLENSGETVPKEIIRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPEAKPPAKN 576
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
AYRMAPPELAEL KQLDELL+AGFIRPAKAPYGA FS+RR+M Y
Sbjct: 577 AYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVFSRRRKMGVY 622
BLAST of PI0008844 vs. NCBI nr
Match:
TYK25834.1 (uncharacterized protein E5676_scaffold436G00420 [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+S E VPK+I+ VLEKY DVM SLPK+LPPRRMIDHEIEL+PGAK PAKN
Sbjct: 67 MAIPLNSSENSGETVPKEIMRVLEKYRDVMLDSLPKSLPPRRMIDHEIELVPGAKLPAKN 126
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
AYRMAPPELAELRKQLDELL+AGFIRPAKAPYG + FS+RR+M Y
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGPQFFSRRRKMGVY 172
BLAST of PI0008844 vs. NCBI nr
Match:
TYK01833.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL+S E VPK+I+ VLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 67 MAIPLNSSENSRETVPKEIVRVLEKYHDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 126
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA 95
AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGA 160
BLAST of PI0008844 vs. NCBI nr
Match:
KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 6.1e-36
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 0
Query: 1 MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
MA PL S E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 607 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 666
Query: 61 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA +R++
Sbjct: 667 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 708
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V6G0 | 2.8e-39 | 81.37 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7UQ20 | 2.4e-38 | 78.30 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DQI8 | 5.9e-37 | 76.42 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BQ68 | 2.2e-36 | 82.98 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
| A0A5D3C4R1 | 2.9e-36 | 77.45 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0062527.1 | 5.9e-39 | 81.37 | uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa] | [more] |
| KAA0055559.1 | 5.0e-38 | 78.30 | uncharacterized protein E6C27_scaffold222G00360 [Cucumis melo var. makuwa] | [more] |
| TYK25834.1 | 1.2e-36 | 76.42 | uncharacterized protein E5676_scaffold436G00420 [Cucumis melo var. makuwa] | [more] |
| TYK01833.1 | 4.6e-36 | 82.98 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| KAA0067557.1 | 6.1e-36 | 77.45 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
