PI0008844.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008844.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr09: 15086767 .. 15087111 (-)
Sequence length	345
RNA-Seq Expression	PI0008844.1
Synteny	PI0008844.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGAAACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGA

mRNA sequence

ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGAAACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGA

Coding sequence (CDS)

ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGAAACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGA

Protein sequence

MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAYVCASTIVH

Homology

[Close]

BLAST of PI0008844.1 vs. ExPASy TrEMBL
Match: A0A5A7V6G0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43900G00020 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+SL    E VPKDILCVLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 326 MAIPLESLENPGETVPKDILCVLEKYSDVMPDSLPKSLPPRRMIDHEIELLPGAKPPAKN 385

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
           AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA    ++++
Sbjct: 386 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGAPVLFQKKK 427

[Close]

BLAST of PI0008844.1 vs. ExPASy TrEMBL
Match: A0A5A7UQ20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00360 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+SL    E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+P AKPPAKN
Sbjct: 517 MAIPLNSLENSGETVPKEIIRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPEAKPPAKN 576

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
           AYRMAPPELAEL KQLDELL+AGFIRPAKAPYGA  FS+RR+M  Y
Sbjct: 577 AYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVFSRRRKMGVY 622

[Close]

BLAST of PI0008844.1 vs. ExPASy TrEMBL
Match: A0A5D3DQI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00420 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+S     E VPK+I+ VLEKY DVM  SLPK+LPPRRMIDHEIEL+PGAK PAKN
Sbjct: 67  MAIPLNSSENSGETVPKEIMRVLEKYRDVMLDSLPKSLPPRRMIDHEIELVPGAKLPAKN 126

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
           AYRMAPPELAELRKQLDELL+AGFIRPAKAPYG + FS+RR+M  Y
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGPQFFSRRRKMGVY 172

[Close]

BLAST of PI0008844.1 vs. ExPASy TrEMBL
Match: A0A5D3BQ68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00760 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+S     E VPK+I+ VLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 67  MAIPLNSSENSRETVPKEIVRVLEKYHDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 126

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA 95
           AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGA 160

[Close]

BLAST of PI0008844.1 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL S     E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
           AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA    +R++
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

[Close]

BLAST of PI0008844.1 vs. NCBI nr
Match: KAA0062527.1 (uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 5.9e-39
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+SL    E VPKDILCVLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 326 MAIPLESLENPGETVPKDILCVLEKYSDVMPDSLPKSLPPRRMIDHEIELLPGAKPPAKN 385

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
           AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA    ++++
Sbjct: 386 AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGAPVLFQKKK 427

[Close]

BLAST of PI0008844.1 vs. NCBI nr
Match: KAA0055559.1 (uncharacterized protein E6C27_scaffold222G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 5.0e-38
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+SL    E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+P AKPPAKN
Sbjct: 517 MAIPLNSLENSGETVPKEIIRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPEAKPPAKN 576

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
           AYRMAPPELAEL KQLDELL+AGFIRPAKAPYGA  FS+RR+M  Y
Sbjct: 577 AYRMAPPELAELWKQLDELLNAGFIRPAKAPYGAPVFSRRRKMGVY 622

[Close]

BLAST of PI0008844.1 vs. NCBI nr
Match: TYK25834.1 (uncharacterized protein E5676_scaffold436G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+S     E VPK+I+ VLEKY DVM  SLPK+LPPRRMIDHEIEL+PGAK PAKN
Sbjct: 67  MAIPLNSSENSGETVPKEIMRVLEKYRDVMLDSLPKSLPPRRMIDHEIELVPGAKLPAKN 126

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAY 107
           AYRMAPPELAELRKQLDELL+AGFIRPAKAPYG + FS+RR+M  Y
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGPQFFSRRRKMGVY 172

[Close]

BLAST of PI0008844.1 vs. NCBI nr
Match: TYK01833.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL+S     E VPK+I+ VLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 67  MAIPLNSSENSRETVPKEIVRVLEKYHDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 126

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA 95
           AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGA 160

[Close]

BLAST of PI0008844.1 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-36
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKN 60
           MA PL S     E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKN
Sbjct: 607 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 666

Query: 61  AYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRR 103
           AYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA    +R++
Sbjct: 667 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 708

The following BLAST results are available for this feature:

BLAST of PI0008844.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008844.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6G0	2.8e-39	81.37	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UQ20	2.4e-38	78.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DQI8	5.9e-37	76.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQ68	2.2e-36	82.98	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3C4R1	2.9e-36	77.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of PI0008844.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062527.1	5.9e-39	81.37	uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]	[more]
KAA0055559.1	5.0e-38	78.30	uncharacterized protein E6C27_scaffold222G00360 [Cucumis melo var. makuwa]	[more]
TYK25834.1	1.2e-36	76.42	uncharacterized protein E5676_scaffold436G00420 [Cucumis melo var. makuwa]	[more]
TYK01833.1	4.6e-36	82.98	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	6.1e-36	77.45	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0008844.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 34..107 e-value: 2.3E-13 score: 52.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 25..94
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 25..94
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008844	PI0008844	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008844.1-exon	PI0008844.1-exon-chr09:15086767..15087111	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008844.1-cds	PI0008844.1-cds-chr09:15086767..15087111	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008844.1	PI0008844.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding