Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGACCTTCTTCAACGTGATCAGGTACGTAAATACTGAAACTTGATTTTTTTATACTTTAGTATTCATTTATTTGTTTATAATGTAATATACAATATTTCAAATTATTTGAGAGCTTTACAAAAATGTATTGGACAATTTGCCCAATTTTGTAAGAACAGTCAAGACATATGGCGGACCATCAATCCTCTCATATGTTTTCATATTGGGGAGTGACATTATCCTGATAGGGTGATCAGACAGCTTGGTTTTAAACAAGATATCCCATCAGAATGCAATACTGAGCCACTTCTTCATAGCATTGATCTGAGAAATAAAGATTGGTCAGATAAGGTCGCACATTTGGTAGTGCGATGGCAATCTCGTAGAAGATTTATTGCAGCGGGAGCTTTGATTCAGCAATTCGATAGAGACGTGACTCAAGAATACATCAACTGGTATAATAATATTACACGACTCTACATCACTCGATCAGGTGCAGCTTTGGATCATCTGGTACATAATTAAATATTGTATAATTACTTTATATTATATACCAAATTAAATATTTTCTAATTTTTTTTGCAATTCACAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA
mRNA sequence
ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA
Coding sequence (CDS)
ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA
Protein sequence
MFDLLQRDQRSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGRDRENIMNIKVYQIHKSTNKNQRIKMSKSHIDFKVVDDNRLEIDDVRVVGHIDLF
Homology
BLAST of PI0008653 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVPP T+TQSQ+ Y S MTMMP FG GY D GY+D+ VGP SSYMD PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436
Query: 130 YMYGHGR 137
YMYGHGR
Sbjct: 437 YMYGHGR 443
BLAST of PI0008653 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 99/153 (64.71%), Postives = 110/153 (71.90%), Query Frame = 0
Query: 1 MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYM 60
MFDLLQRDQ RSNN R+RDVADD Q LDI N+NERYMEE+H M
Sbjct: 1 MFDLLQRDQIIWEPYKDVIDNLLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNM 60
Query: 61 YDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYD 120
YD+PIVPP VHRG RVEEAELD+VYHNVEEVP T+TQSQ+ Y S MTMMP F GY D
Sbjct: 61 YDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCD 120
Query: 121 LGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR 137
GY+D+ VGPSSSY+D SPSTSYM+GH R
Sbjct: 121 FEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRR 153
BLAST of PI0008653 vs. ExPASy TrEMBL
Match:
A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 2.9e-44
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD TGY+D+ + PSS YMD PS
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268
Query: 130 YMYGHGR 137
YM+GH R
Sbjct: 269 YMHGHKR 275
BLAST of PI0008653 vs. ExPASy TrEMBL
Match:
A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)
HSP 1 Score: 186.8 bits (473), Expect = 8.3e-44
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 199
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD TGY+D+ + PSS YMD PS
Sbjct: 200 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 259
Query: 130 YMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI 167
YM+GH R E+ + Y+ +ST R + + I
Sbjct: 260 YMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPRGPI 297
BLAST of PI0008653 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 9.2e-43
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDVADD Q LDI N+NERYMEE+H MYD+PIVPP VHRG RVEEAELD+VY
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVP T+TQSQ+ Y S MTMMP F GY D GY+D+ VGPSSSY+D SPSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 130 YMYGHGR 137
YM+GH R
Sbjct: 159 YMHGHSR 165
BLAST of PI0008653 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 191.4 bits (485), Expect = 7.0e-45
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVPP T+TQSQ+ Y S MTMMP FG GY D GY+D+ VGP SSYMD PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436
Query: 130 YMYGHGR 137
YMYGHGR
Sbjct: 437 YMYGHGR 443
BLAST of PI0008653 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 189.1 bits (479), Expect = 3.5e-44
Identity = 99/153 (64.71%), Postives = 110/153 (71.90%), Query Frame = 0
Query: 1 MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYM 60
MFDLLQRDQ RSNN R+RDVADD Q LDI N+NERYMEE+H M
Sbjct: 1 MFDLLQRDQIIWEPYKDVIDNLLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNM 60
Query: 61 YDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYD 120
YD+PIVPP VHRG RVEEAELD+VYHNVEEVP T+TQSQ+ Y S MTMMP F GY D
Sbjct: 61 YDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCD 120
Query: 121 LGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR 137
GY+D+ VGPSSSY+D SPSTSYM+GH R
Sbjct: 121 FEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRR 153
BLAST of PI0008653 vs. NCBI nr
Match:
KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 188.3 bits (477), Expect = 5.9e-44
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD TGY+D+ + PSS YMD PS
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268
Query: 130 YMYGHGR 137
YM+GH R
Sbjct: 269 YMHGHKR 275
BLAST of PI0008653 vs. NCBI nr
Match:
TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 186.8 bits (473), Expect = 1.7e-43
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 199
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD TGY+D+ + PSS YMD PS
Sbjct: 200 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 259
Query: 130 YMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI 167
YM+GH R E+ + Y+ +ST R + + I
Sbjct: 260 YMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPRGPI 297
BLAST of PI0008653 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0
Query: 10 RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
RSNN R+RDVADD Q LDI N+NERYMEE+H MYD+PIVPP VHRG RVEEAELD+VY
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 70 HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
HNVEEVP T+TQSQ+ Y S MTMMP F GY D GY+D+ VGPSSSY+D SPSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 130 YMYGHGR 137
YM+GH R
Sbjct: 159 YMHGHSR 165
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DJV7 | 3.4e-45 | 72.44 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5D3BSG8 | 1.7e-44 | 64.71 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7TBF8 | 2.9e-44 | 70.87 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3CH23 | 8.3e-44 | 60.76 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7V342 | 9.2e-43 | 70.87 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK23842.1 | 7.0e-45 | 72.44 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| TYK01176.1 | 3.5e-44 | 64.71 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0038951.1 | 5.9e-44 | 70.87 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK11193.1 | 1.7e-43 | 60.76 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0062642.1 | 1.9e-42 | 70.87 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
