PI0008653.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008653.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr06: 16713464 .. 16714586 (+)
Sequence length	573
RNA-Seq Expression	PI0008653.1
Synteny	PI0008653.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGACCTTCTTCAACGTGATCAGGTACGTAAATACTGAAACTTGATTTTTTTATACTTTAGTATTCATTTATTTGTTTATAATGTAATATACAATATTTCAAATTATTTGAGAGCTTTACAAAAATGTATTGGACAATTTGCCCAATTTTGTAAGAACAGTCAAGACATATGGCGGACCATCAATCCTCTCATATGTTTTCATATTGGGGAGTGACATTATCCTGATAGGGTGATCAGACAGCTTGGTTTTAAACAAGATATCCCATCAGAATGCAATACTGAGCCACTTCTTCATAGCATTGATCTGAGAAATAAAGATTGGTCAGATAAGGTCGCACATTTGGTAGTGCGATGGCAATCTCGTAGAAGATTTATTGCAGCGGGAGCTTTGATTCAGCAATTCGATAGAGACGTGACTCAAGAATACATCAACTGGTATAATAATATTACACGACTCTACATCACTCGATCAGGTGCAGCTTTGGATCATCTGGTACATAATTAAATATTGTATAATTACTTTATATTATATACCAAATTAAATATTTTCTAATTTTTTTTGCAATTCACAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA

mRNA sequence

ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA

Coding sequence (CDS)

ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA

Protein sequence

MFDLLQRDQRSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGRDRENIMNIKVYQIHKSTNKNQRIKMSKSHIDFKVVDDNRLEIDDVRVVGHIDLF

Homology

[Close]

BLAST of PI0008653.1 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GY D     GY+D+ VGP SSYMD  PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436

Query: 130 YMYGHGR 137
           YMYGHGR
Sbjct: 437 YMYGHGR 443

[Close]

BLAST of PI0008653.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 99/153 (64.71%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 1   MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYM 60
           MFDLLQRDQ                 RSNN R+RDVADD Q  LDI N+NERYMEE+H M
Sbjct: 1   MFDLLQRDQIIWEPYKDVIDNLLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNM 60

Query: 61  YDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYD 120
           YD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQSQ+ Y S MTMMP F  GY D
Sbjct: 61  YDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCD 120

Query: 121 LGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR 137
                GY+D+ VGPSSSY+D SPSTSYM+GH R
Sbjct: 121 FEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRR 153

[Close]

BLAST of PI0008653.1 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.9e-44
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 269 YMHGHKR 275

[Close]

BLAST of PI0008653.1 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 8.3e-44
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 199

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 200 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 259

Query: 130 YMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI 167
           YM+GH R   E+   +  Y+  +ST    R +  +  I
Sbjct: 260 YMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPRGPI 297

[Close]

BLAST of PI0008653.1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.2e-43
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VY
Sbjct: 39  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVP  T+TQSQ+ Y S MTMMP F  GY D     GY+D+ VGPSSSY+D SPSTS
Sbjct: 99  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 159 YMHGHSR 165

[Close]

BLAST of PI0008653.1 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-45
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GY D     GY+D+ VGP SSYMD  PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436

Query: 130 YMYGHGR 137
           YMYGHGR
Sbjct: 437 YMYGHGR 443

[Close]

BLAST of PI0008653.1 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 3.5e-44
Identity = 99/153 (64.71%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 1   MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYM 60
           MFDLLQRDQ                 RSNN R+RDVADD Q  LDI N+NERYMEE+H M
Sbjct: 1   MFDLLQRDQIIWEPYKDVIDNLLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNM 60

Query: 61  YDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYD 120
           YD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQSQ+ Y S MTMMP F  GY D
Sbjct: 61  YDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCD 120

Query: 121 LGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR 137
                GY+D+ VGPSSSY+D SPSTSYM+GH R
Sbjct: 121 FEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRR 153

[Close]

BLAST of PI0008653.1 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 5.9e-44
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 269 YMHGHKR 275

[Close]

BLAST of PI0008653.1 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-43
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 199

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 200 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 259

Query: 130 YMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI 167
           YM+GH R   E+   +  Y+  +ST    R +  +  I
Sbjct: 260 YMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPRGPI 297

[Close]

BLAST of PI0008653.1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VY
Sbjct: 39  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVP  T+TQSQ+ Y S MTMMP F  GY D     GY+D+ VGPSSSY+D SPSTS
Sbjct: 99  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 159 YMHGHSR 165

The following BLAST results are available for this feature:

BLAST of PI0008653.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008653.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJV7	3.4e-45	72.44	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BSG8	1.7e-44	64.71	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7TBF8	2.9e-44	70.87	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CH23	8.3e-44	60.76	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7V342	9.2e-43	70.87	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0008653.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23842.1	7.0e-45	72.44	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK01176.1	3.5e-44	64.71	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0038951.1	5.9e-44	70.87	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK11193.1	1.7e-43	60.76	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0062642.1	1.9e-42	70.87	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0008653.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008653	PI0008653	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008653.1-exon	PI0008653.1-exon-chr06:16713464..16713490	exon
PI0008653.1-exon	PI0008653.1-exon-chr06:16714041..16714586	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008653.1-cds	PI0008653.1-cds-chr06:16713464..16713490	CDS
PI0008653.1-cds	PI0008653.1-cds-chr06:16714041..16714586	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008653.1	PI0008653.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance