PI0006680 (gene) Melon (PI 482460) v1

Overview


Name	PI0006680
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr10: 4646250 .. 4646789 (-)
RNA-Seq Expression	PI0006680
Synteny	PI0006680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCGGAAATAGCAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTTGAATAGCTACTTTAAAAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTGTTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATCTGCCATCAAAGAAGCCTTGGCTTTGATAGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGCTACGCAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTATAAATACTGAGTCTGAACAGCTATTCATCTTATCTTGTGAGAAAAATGAGACCATAGATAAGAAGGAATTGGAGATTGCTAAGCTCCAAGACGAAGCCAATGCTCTTGAAAGCACCCCTGCTATTACCGAAGAAGCCACTGAGGCCTTAGCTACGGTTCGTAAGAGTATGGAGGCTACACTCGAAGAATTCAGGAACTTCAAGTAG

mRNA sequence

ATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCGGAAATAGCAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTTGAATAGCTACTTTAAAAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTGTTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATCTGCCATCAAAGAAGCCTTGGCTTTGATAGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGCTACGCAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTATAAATACTGAGTCTGAACAGCTATTCATCTTATCTTGTGAGAAAAATGAGACCATAGATAAGAAGGAATTGGAGATTGCTAAGCTCCAAGACGAAGCCAATGCTCTTGAAAGCACCCCTGCTATTACCGAAGAAGCCACTGAGGCCTTAGCTACGGTTCGTAAGAGTATGGAGGCTACACTCGAAGAATTCAGGAACTTCAAGTAG

Coding sequence (CDS)

ATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCGGAAATAGCAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAGAATATTTGAATAGCTACTTTAAAAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTGTTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATCTGCCATCAAAGAAGCCTTGGCTTTGATAGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGCTACGCAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTATAAATACTGAGTCTGAACAGCTATTCATCTTATCTTGTGAGAAAAATGAGACCATAGATAAGAAGGAATTGGAGATTGCTAAGCTCCAAGACGAAGCCAATGCTCTTGAAAGCACCCCTGCTATTACCGAAGAAGCCACTGAGGCCTTAGCTACGGTTCGTAAGAGTATGGAGGCTACACTCGAAGAATTCAGGAACTTCAAGTAG

Protein sequence

MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLFILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK

Homology

[Close]

BLAST of PI0006680 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 144/179 (80.45%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYSAQLL 
Sbjct: 740 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 799

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTSAIKE L L+ QL+ DAKVIQER  +LSLE+KELE RL+SIN ESEQL 
Sbjct: 800 TDKARQLNEKTSAIKEVLTLVKQLRGDAKVIQERTAELSLERKELEKRLRSINAESEQLS 859

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E ID++ELE+AKLQDE N LESTPAITEEA EALATVR+SMEA  EEF+NFK
Sbjct: 860 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFK 918

[Close]

BLAST of PI0006680 vs. ExPASy TrEMBL
Match: A0A5D3BW91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001500 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 144/179 (80.45%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRT FEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYSAQLL 
Sbjct: 331 MRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 390

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTSAIKEAL L+ QL+ DAKVIQER  +LSLE+KELE RLQSIN ESEQL 
Sbjct: 391 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKRLQSINAESEQLS 450

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E ID++ELE+AKLQDE N LESTPAI EEA EALAT+R+SMEAT EEF+NFK
Sbjct: 451 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAIIEEAIEALATIRQSMEATREEFKNFK 509

[Close]

BLAST of PI0006680 vs. ExPASy TrEMBL
Match: A0A5A7V3X5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00140 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 142/179 (79.33%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI  + LTPLEEYLNSY KRVDNFNDVQSSYSAQLL 
Sbjct: 310 MRTPFEYIPRLRPEIATVLSGIEKIHTNGLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLS 369

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQLDEKTSAI+EAL L+++L+EDA VIQERA QLSLEKKELE RLQS+N ESEQL 
Sbjct: 370 TDKARQLDEKTSAIEEALTLMEKLREDANVIQERAMQLSLEKKELERRLQSLNAESEQLS 429

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E I ++ELE+AKLQDE N LE TPAITEE  EALA VR+SMEA  EEF+NFK
Sbjct: 430 ILSCEKIEAIYQQELEVAKLQDEVNTLEGTPAITEEVIEALAMVRRSMEAAREEFKNFK 488

[Close]

BLAST of PI0006680 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.7e-65
Identity = 144/179 (80.45%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYSAQL L
Sbjct: 648 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLSL 707

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTSAIKEAL L+ QL+ DAKVIQER  +LSLE+KELE RLQSIN ESEQL 
Sbjct: 708 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTVELSLERKELEKRLQSINAESEQLS 767

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILS EK E ID++ELE+AKLQDE N LESTPAI EEA EALATVR+SMEA  EEF+NFK
Sbjct: 768 ILSYEKAEAIDQQELEVAKLQDEVNTLESTPAIIEEAIEALATVRQSMEAAGEEFKNFK 826

[Close]

BLAST of PI0006680 vs. ExPASy TrEMBL
Match: A0A5A7TYW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00180 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.1e-65
Identity = 142/179 (79.33%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYS QLL 
Sbjct: 563 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSPQLLS 622

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDKTRQL+EKTSAIKEAL L+ +L+ D KVIQER  +LSLE+KELE RL+SIN ESEQL 
Sbjct: 623 TDKTRQLNEKTSAIKEALTLVKKLRGDVKVIQERTAELSLERKELEKRLRSINDESEQLS 682

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E ID++ELE+AKLQDE N LESTPAITEEA EALATV +SMEA  EEF+NFK
Sbjct: 683 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAITEEAIEALATVCQSMEAAREEFKNFK 741

[Close]

BLAST of PI0006680 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-66
Identity = 144/179 (80.45%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYSAQLL 
Sbjct: 740 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 799

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTSAIKE L L+ QL+ DAKVIQER  +LSLE+KELE RL+SIN ESEQL 
Sbjct: 800 TDKARQLNEKTSAIKEVLTLVKQLRGDAKVIQERTAELSLERKELEKRLRSINAESEQLS 859

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E ID++ELE+AKLQDE N LESTPAITEEA EALATVR+SMEA  EEF+NFK
Sbjct: 860 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFK 918

[Close]

BLAST of PI0006680 vs. NCBI nr
Match: TYK03767.1 (hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 8.8e-66
Identity = 144/179 (80.45%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRT FEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYSAQLL 
Sbjct: 331 MRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 390

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTSAIKEAL L+ QL+ DAKVIQER  +LSLE+KELE RLQSIN ESEQL 
Sbjct: 391 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKRLQSINAESEQLS 450

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E ID++ELE+AKLQDE N LESTPAI EEA EALAT+R+SMEAT EEF+NFK
Sbjct: 451 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAIIEEAIEALATIRQSMEATREEFKNFK 509

[Close]

BLAST of PI0006680 vs. NCBI nr
Match: KAA0060431.1 (hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK18520.1 hypothetical protein E5676_scaffold119G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 7.5e-65
Identity = 142/179 (79.33%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI  + LTPLEEYLNSY KRVDNFNDVQSSYSAQLL 
Sbjct: 310 MRTPFEYIPRLRPEIATVLSGIEKIHTNGLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLS 369

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQLDEKTSAI+EAL L+++L+EDA VIQERA QLSLEKKELE RLQS+N ESEQL 
Sbjct: 370 TDKARQLDEKTSAIEEALTLMEKLREDANVIQERAMQLSLEKKELERRLQSLNAESEQLS 429

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E I ++ELE+AKLQDE N LE TPAITEE  EALA VR+SMEA  EEF+NFK
Sbjct: 430 ILSCEKIEAIYQQELEVAKLQDEVNTLEGTPAITEEVIEALAMVRRSMEAAREEFKNFK 488

[Close]

BLAST of PI0006680 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 9.8e-65
Identity = 144/179 (80.45%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI AD LT LEEYLNSY KRVDNFNDVQSSYSAQL L
Sbjct: 648 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLSL 707

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTSAIKEAL L+ QL+ DAKVIQER  +LSLE+KELE RLQSIN ESEQL 
Sbjct: 708 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTVELSLERKELEKRLQSINAESEQLS 767

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILS EK E ID++ELE+AKLQDE N LESTPAI EEA EALATVR+SMEA  EEF+NFK
Sbjct: 768 ILSYEKAEAIDQQELEVAKLQDEVNTLESTPAIIEEAIEALATVRQSMEAAGEEFKNFK 826

[Close]

BLAST of PI0006680 vs. NCBI nr
Match: TYK06376.1 (hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-64
Identity = 140/179 (78.21%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MRTPFEYIPRLRPEIAKVLSGIAKIQADNLTPLEEYLNSYFKRVDNFNDVQSSYSAQLLL 60
           MRTPFEYIPRLRPEIA VLSGI KI AD+LTPLEEYLNSY KRVDNFNDVQSSY AQLL 
Sbjct: 1   MRTPFEYIPRLRPEIATVLSGIEKIHADDLTPLEEYLNSYLKRVDNFNDVQSSYFAQLLS 60

Query: 61  TDKTRQLDEKTSAIKEALALIDQLQEDAKVIQERATQLSLEKKELESRLQSINTESEQLF 120
           TDK RQL+EKTS IKEAL L++QL+ED KVIQER  +LSLE+KEL+ RLQSIN ESEQL 
Sbjct: 61  TDKARQLNEKTSVIKEALTLVEQLREDVKVIQERTAELSLERKELKKRLQSINAESEQLS 120

Query: 121 ILSCEKNETIDKKELEIAKLQDEANALESTPAITEEATEALATVRKSMEATLEEFRNFK 180
           ILSCEK E ID++EL+I KLQD+ N LESTPAITEEA EALAT+ KSM+A  EEF+NFK
Sbjct: 121 ILSCEKAEAIDQQELKIFKLQDKVNTLESTPAITEEAIEALATICKSMKAAREEFKNFK 179

The following BLAST results are available for this feature:

BLAST of PI0006680 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHW8	2.5e-66	80.45	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BW91	4.3e-66	80.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V3X5	3.6e-65	79.33	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X8	4.7e-65	80.45	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TYW3	8.1e-65	79.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0006680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065375.1	5.2e-66	80.45	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
TYK03767.1	8.8e-66	80.45	hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]	[more]
KAA0060431.1	7.5e-65	79.33	hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK1852...	[more]
KAA0052363.1	9.8e-65	80.45	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
TYK06376.1	1.7e-64	78.21	hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa]	[more]

BLAST of PI0006680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..150
None	No IPR available	COILS	Coil	Coil	coord: 67..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006680.1	PI0006680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane