Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA
mRNA sequence
ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA
Coding sequence (CDS)
ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA
Protein sequence
MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHIDFLLSFK
Homology
BLAST of PI0006376 vs. ExPASy TrEMBL
Match:
A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0
Query: 1 MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVE 60
MDT NI+NIC +KHLQ YQI KSTNKNQR KR++ NIE RVD +NQLEID+V+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217
Query: 61 HIDFLLS 68
HIDFLLS
Sbjct: 218 HIDFLLS 224
BLAST of PI0006376 vs. ExPASy TrEMBL
Match:
A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0
Query: 4 GATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHID 63
G NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRV+ DNQL+ID VQVVEHID
Sbjct: 350 GRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHID 409
Query: 64 FLLSFK 70
FLLS K
Sbjct: 410 FLLSIK 415
BLAST of PI0006376 vs. ExPASy TrEMBL
Match:
A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 0
Query: 1 MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNV 57
MD NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190
BLAST of PI0006376 vs. ExPASy TrEMBL
Match:
A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0
Query: 22 YQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQ 58
YQI KSTNKNQR KR+Q NIEF+VD DNQLEID++Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61
BLAST of PI0006376 vs. ExPASy TrEMBL
Match:
A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query: 1 MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNI 42
MD T NI NIC +KHLQ YQI KSTNKNQR KR++ +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146
BLAST of PI0006376 vs. NCBI nr
Match:
KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 96.7 bits (239), Expect = 8.5e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0
Query: 1 MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVE 60
MDT NI+NIC +KHLQ YQI KSTNKNQR KR++ NIE RVD +NQLEID+V+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217
Query: 61 HIDFLLS 68
HIDFLLS
Sbjct: 218 HIDFLLS 224
BLAST of PI0006376 vs. NCBI nr
Match:
KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0
Query: 4 GATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHID 63
G NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRV+ DNQL+ID VQVVEHID
Sbjct: 350 GRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHID 409
Query: 64 FLLSFK 70
FLLS K
Sbjct: 410 FLLSIK 415
BLAST of PI0006376 vs. NCBI nr
Match:
KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 0
Query: 1 MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNV 57
MD NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190
BLAST of PI0006376 vs. NCBI nr
Match:
KAA0040939.1 (stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] >TYK20318.1 stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0
Query: 22 YQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQ 58
YQI KSTNKNQR KR+Q NIEF+VD DNQLEID++Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61
BLAST of PI0006376 vs. NCBI nr
Match:
TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query: 1 MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNI 42
MD T NI NIC +KHLQ YQI KSTNKNQR KR++ +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3C2V9 | 4.1e-17 | 71.64 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7TDY5 | 7.0e-17 | 72.73 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7VF64 | 1.2e-11 | 69.64 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7TI03 | 1.2e-05 | 77.78 | Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa... | [more] |
| A0A5D3CD18 | 1.8e-04 | 63.41 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0040602.1 | 8.5e-17 | 71.64 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0041168.1 | 1.5e-16 | 72.73 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0066693.1 | 2.4e-11 | 69.64 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0040939.1 | 2.6e-05 | 77.78 | stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] ... | [more] |
| TYK08229.1 | 3.7e-04 | 63.41 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
