PI0006376.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0006376.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr09: 13687699 .. 13687908 (+)
Sequence length	210
RNA-Seq Expression	PI0006376.1
Synteny	PI0006376.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

mRNA sequence

ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Coding sequence (CDS)

ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Protein sequence

MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHIDFLLSFK

Homology

[Close]

BLAST of PI0006376.1 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVE 60
           MDT     NI+NIC +KHLQ YQI KSTNKNQR KR++ NIE RVD +NQLEID+V+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HIDFLLS 68
           HIDFLLS
Sbjct: 218 HIDFLLS 224

[Close]

BLAST of PI0006376.1 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 4   GATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHID 63
           G    NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRV+ DNQL+ID VQVVEHID
Sbjct: 350 GRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHID 409

Query: 64  FLLSFK 70
           FLLS K
Sbjct: 410 FLLSIK 415

[Close]

BLAST of PI0006376.1 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNV 57
           MD      NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

[Close]

BLAST of PI0006376.1 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 22 YQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQ 58
          YQI KSTNKNQR KR+Q NIEF+VD DNQLEID++Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

[Close]

BLAST of PI0006376.1 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNI 42
           MD   T  NI NIC +KHLQ YQI KSTNKNQR KR++ +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

[Close]

BLAST of PI0006376.1 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 8.5e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVE 60
           MDT     NI+NIC +KHLQ YQI KSTNKNQR KR++ NIE RVD +NQLEID+V+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HIDFLLS 68
           HIDFLLS
Sbjct: 218 HIDFLLS 224

[Close]

BLAST of PI0006376.1 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 4   GATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHID 63
           G    NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRV+ DNQL+ID VQVVEHID
Sbjct: 350 GRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHID 409

Query: 64  FLLSFK 70
           FLLS K
Sbjct: 410 FLLSIK 415

[Close]

BLAST of PI0006376.1 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNV 57
           MD      NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

[Close]

BLAST of PI0006376.1 vs. NCBI nr
Match: KAA0040939.1 (stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] >TYK20318.1 stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 22 YQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQ 58
          YQI KSTNKNQR KR+Q NIEF+VD DNQLEID++Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

[Close]

BLAST of PI0006376.1 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNI 42
           MD   T  NI NIC +KHLQ YQI KSTNKNQR KR++ +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

The following BLAST results are available for this feature:

BLAST of PI0006376.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006376.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2V9	4.1e-17	71.64	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TDY5	7.0e-17	72.73	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7VF64	1.2e-11	69.64	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TI03	1.2e-05	77.78	Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A5D3CD18	1.8e-04	63.41	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0006376.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040602.1	8.5e-17	71.64	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0041168.1	1.5e-16	72.73	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0066693.1	2.4e-11	69.64	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0040939.1	2.6e-05	77.78	stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] ...	[more]
TYK08229.1	3.7e-04	63.41	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0006376.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0006376	PI0006376	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006376.1-exon	PI0006376.1-exon-chr09:13687699..13687908	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006376.1-cds	PI0006376.1-cds-chr09:13687699..13687908	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0006376.1	PI0006376.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance