PI0006376 (gene) Melon (PI 482460) v1

Overview
NamePI0006376
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr09: 13687699 .. 13687908 (+)
RNA-Seq ExpressionPI0006376
SyntenyPI0006376
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

mRNA sequence

ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Coding sequence (CDS)

ATGGACACGGGCGCGACCGCAGAGAACATAATAAATATTTGTACTATAAAACACTTGCAGACGTATCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACATAGAGTTCAGAGTCGACGGCGACAACCAGCTCGAAATCGACAACGTTCAGGTTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Protein sequence

MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHIDFLLSFK
Homology
BLAST of PI0006376 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVE 60
           MDT     NI+NIC +KHLQ YQI KSTNKNQR KR++ NIE RVD +NQLEID+V+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HIDFLLS 68
           HIDFLLS
Sbjct: 218 HIDFLLS 224

BLAST of PI0006376 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 4   GATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHID 63
           G    NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRV+ DNQL+ID VQVVEHID
Sbjct: 350 GRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHID 409

Query: 64  FLLSFK 70
           FLLS K
Sbjct: 410 FLLSIK 415

BLAST of PI0006376 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNV 57
           MD      NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0006376 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 22 YQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQ 58
          YQI KSTNKNQR KR+Q NIEF+VD DNQLEID++Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

BLAST of PI0006376 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNI 42
           MD   T  NI NIC +KHLQ YQI KSTNKNQR KR++ +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

BLAST of PI0006376 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 8.5e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVE 60
           MDT     NI+NIC +KHLQ YQI KSTNKNQR KR++ NIE RVD +NQLEID+V+VVE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HIDFLLS 68
           HIDFLLS
Sbjct: 218 HIDFLLS 224

BLAST of PI0006376 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 4   GATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQVVEHID 63
           G    NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRV+ DNQL+ID VQVVEHID
Sbjct: 350 GRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHID 409

Query: 64  FLLSFK 70
           FLLS K
Sbjct: 410 FLLSIK 415

BLAST of PI0006376 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNV 57
           MD      NI NIC +KHLQ YQI KSTNKNQR KR++ NIEFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0006376 vs. NCBI nr
Match: KAA0040939.1 (stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] >TYK20318.1 stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 22 YQIHKSTNKNQRIKRSQGNIEFRVDGDNQLEIDNVQ 58
          YQI KSTNKNQR KR+Q NIEF+VD DNQLEID++Q
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

BLAST of PI0006376 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTGATAENIINICTIKHLQTYQIHKSTNKNQRIKRSQGNI 42
           MD   T  NI NIC +KHLQ YQI KSTNKNQR KR++ +I
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2V94.1e-1771.64Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TDY57.0e-1772.73Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7VF641.2e-1169.64Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TI031.2e-0577.78Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa... [more]
A0A5D3CD181.8e-0463.41GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
KAA0040602.18.5e-1771.64mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0041168.11.5e-1672.73serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0066693.12.4e-1169.64mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0040939.12.6e-0577.78stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] ... [more]
TYK08229.13.7e-0463.41GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006376.1PI0006376.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance