PI0005245 (gene) Melon (PI 482460) v1

Overview
NamePI0005245
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr06: 1276937 .. 1277443 (-)
RNA-Seq ExpressionPI0005245
SyntenyPI0005245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGGAATTTTAGGACCATTATAGTTACGGCACCAGGACTTTGGTCGCCAGGTCCCTGTCATCTGGTCACCTACTTCCCGGACCTTCTAGCACTGGACAGACGTTATATACAGTCTTGCAATTTTGCAAAGTTCTCTGTTTTTGGTTGGTAAACAGTCGCCCGGCCGGGTTACTGCAACCTCTTCTTCCATGTCAAAGCTGTTATTGTATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGTAACTCATACAGCTGATTTAGTAACTTTAAATGATCATTGAAGTCCATTAAATGTTGTGAGTTTATCTTTAATTTCAATGGAATTGATGATCGTAGTAGTTTTTATTAGCTTGAAACATCACCATGCCATAACATAACCTATCCTATTTATGGCGGATGAAAAAATGGTAGAGGATGTAGAGGAGTATCACAATAACTTATAAAATCGTTAGTTGAAAACATCTAAGGCCTTCTGCTTGAAGGTTCAAGGCTAA

mRNA sequence

ATGACAAGGAATTTTAGGACCATTATAGTTACGGCACCAGGACTTTGGTCGCCAGGTCCCTTCGCCCGGCCGGGTTACTGCAACCTCTTCTTCCATGTCAAAGCTGTTATTGTATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGTTCAAGGCTAA

Coding sequence (CDS)

ATGACAAGGAATTTTAGGACCATTATAGTTACGGCACCAGGACTTTGGTCGCCAGGTCCCTTCGCCCGGCCGGGTTACTGCAACCTCTTCTTCCATGTCAAAGCTGTTATTGTATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGTTCAAGGCTAA

Protein sequence

MTRNFRTIIVTAPGLWSPGPFARPGYCNLFFHVKAVIVSNWKTDGCKEICQVQG
Homology
[Close]
BLAST of PI0005245 vs. ExPASy TrEMBL
Match: A0A0A0L7G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122410 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1  MTRNFRTIIVTAPGLWSPGPFA----RP-GYCNLFFHVKAVIVSNWKTDGCKEICQVQG 55
          M RNF T+   + G   PGP +    RP G+CNLFFHV AVIVS+WKTDGCKEICQVQG
Sbjct: 1  MKRNFATLGPLSSGHLLPGPSSTGQIRPVGHCNLFFHVNAVIVSDWKTDGCKEICQVQG 59

[Close]
BLAST of PI0005245 vs. NCBI nr
Match: KGN56517.1 (hypothetical protein Csa_011570 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1  MTRNFRTIIVTAPGLWSPGPFA----RP-GYCNLFFHVKAVIVSNWKTDGCKEICQVQG 55
          M RNF T+   + G   PGP +    RP G+CNLFFHV AVIVS+WKTDGCKEICQVQG
Sbjct: 1  MKRNFATLGPLSSGHLLPGPSSTGQIRPVGHCNLFFHVNAVIVSDWKTDGCKEICQVQG 59

[Close]
BLAST of PI0005245 vs. NCBI nr
Match: XP_031738549.1 (16 kDa phloem protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 22 ARP-GYCNLFFHVKAVIVSNWKTDGCKEICQ 52
          +RP G+CNLFFHV AVIVS+WKTDGCKEICQ
Sbjct: 16 SRPVGHCNLFFHVNAVIVSDWKTDGCKEICQ 46

The following BLAST results are available for this feature:
BLAST of PI0005245 vs.
Match NameE-valueIdentityDescription
BLAST of PI0005245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7G81.2e-1164.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122410 PE=4 SV=1[more]
BLAST of PI0005245 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56517.12.4e-1164.41hypothetical protein Csa_011570 [Cucumis sativus][more]
XP_031738549.11.8e-0683.8716 kDa phloem protein 2 isoform X1 [Cucumis sativus][more]
BLAST of PI0005245 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005245.1PI0005245.1mRNA