|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGACAAGGAATTTTAGGACCATTATAGTTACGGCACCAGGACTTTGGTCGCCAGGTCCCTGTCATCTGGTCACCTACTTCCCGGACCTTCTAGCACTGGACAGACGTTATATACAGTCTTGCAATTTTGCAAAGTTCTCTGTTTTTGGTTGGTAAACAGTCGCCCGGCCGGGTTACTGCAACCTCTTCTTCCATGTCAAAGCTGTTATTGTATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGTAACTCATACAGCTGATTTAGTAACTTTAAATGATCATTGAAGTCCATTAAATGTTGTGAGTTTATCTTTAATTTCAATGGAATTGATGATCGTAGTAGTTTTTATTAGCTTGAAACATCACCATGCCATAACATAACCTATCCTATTTATGGCGGATGAAAAAATGGTAGAGGATGTAGAGGAGTATCACAATAACTTATAAAATCGTTAGTTGAAAACATCTAAGGCCTTCTGCTTGAAGGTTCAAGGCTAA mRNA sequence ATGACAAGGAATTTTAGGACCATTATAGTTACGGCACCAGGACTTTGGTCGCCAGGTCCCTTCGCCCGGCCGGGTTACTGCAACCTCTTCTTCCATGTCAAAGCTGTTATTGTATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGTTCAAGGCTAA Coding sequence (CDS) ATGACAAGGAATTTTAGGACCATTATAGTTACGGCACCAGGACTTTGGTCGCCAGGTCCCTTCGCCCGGCCGGGTTACTGCAACCTCTTCTTCCATGTCAAAGCTGTTATTGTATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGTTCAAGGCTAA Protein sequence MTRNFRTIIVTAPGLWSPGPFARPGYCNLFFHVKAVIVSNWKTDGCKEICQVQG
Homology
BLAST of PI0005245.1 vs. ExPASy TrEMBL
Match: A0A0A0L7G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122410 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11 Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 Query: 1 MTRNFRTIIVTAPGLWSPGPFA----RP-GYCNLFFHVKAVIVSNWKTDGCKEICQVQG 55 M RNF T+ + G PGP + RP G+CNLFFHV AVIVS+WKTDGCKEICQVQG Sbjct: 1 MKRNFATLGPLSSGHLLPGPSSTGQIRPVGHCNLFFHVNAVIVSDWKTDGCKEICQVQG 59
BLAST of PI0005245.1 vs. NCBI nr
Match: KGN56517.1 (hypothetical protein Csa_011570 [Cucumis sativus]) HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11 Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 Query: 1 MTRNFRTIIVTAPGLWSPGPFA----RP-GYCNLFFHVKAVIVSNWKTDGCKEICQVQG 55 M RNF T+ + G PGP + RP G+CNLFFHV AVIVS+WKTDGCKEICQVQG Sbjct: 1 MKRNFATLGPLSSGHLLPGPSSTGQIRPVGHCNLFFHVNAVIVSDWKTDGCKEICQVQG 59
BLAST of PI0005245.1 vs. NCBI nr
Match: XP_031738549.1 (16 kDa phloem protein 2 isoform X1 [Cucumis sativus]) HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0 Query: 22 ARP-GYCNLFFHVKAVIVSNWKTDGCKEICQ 52 +RP G+CNLFFHV AVIVS+WKTDGCKEICQ Sbjct: 16 SRPVGHCNLFFHVNAVIVSDWKTDGCKEICQ 46
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L7G8 | 1.2e-11 | 64.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122410 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN56517.1 | 2.4e-11 | 64.41 | hypothetical protein Csa_011570 [Cucumis sativus] | [more] |
XP_031738549.1 | 1.8e-06 | 83.87 | 16 kDa phloem protein 2 isoform X1 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
PI0005245 | PI0005245 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
PI0005245.1-exon | PI0005245.1-exon-chr06:1276937..1276948 | exon |
PI0005245.1-exon | PI0005245.1-exon-chr06:1277192..1277283 | exon |
PI0005245.1-exon | PI0005245.1-exon-chr06:1277383..1277443 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
PI0005245.1-cds | PI0005245.1-cds-chr06:1276937..1276948 | CDS |
PI0005245.1-cds | PI0005245.1-cds-chr06:1277192..1277283 | CDS |
PI0005245.1-cds | PI0005245.1-cds-chr06:1277383..1277443 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
PI0005245.1 | PI0005245.1-protein | polypeptide |
|