PI0004919 (gene) Melon (PI 482460) v1

Overview


Name	PI0004919
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 14679306 .. 14679891 (-)
RNA-Seq Expression	PI0004919
Synteny	PI0004919

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATGGTAGAGGAACCACAAACCAACCAAATCGGGGTCAAGGTCATAGTGGAAATCTGTTTAGCAACCAACGTGGTGCTAACTCCTTAGGAAATTGACGAAGAGGTAGAGGTCAGTTTAGGCCCATTTGTCAAGTTTACACGAAAATTGGTCACACTACATATGTGTTTTGCAATCGATTTAATAAGGATTTTGTTCCTAACTTAGGCTCTAATCGAAACAATCCTTGCAACAACAATAACAAAGCTCCAGTAGCCTTGGTGGTAGTCAGCAGTAACAACCCGTTTGTTTCTAACAACGACAATGACATTGATCCAAACTGGTATGACAGCAGGGCAACTGTTGTGTCGAAATTTGGTAGTGTAGTAGAGAGTAGGGTTGTCGTACCCAAGGGAGCAACTTGCGACTTCAAGATGAATTAAGTAAGTTCAATTATGAGAAGAAAGCTTCAAGATACAAACAAAGTTATTAGTAATAGGGGGGGGGGGGATTGTTGATGGAAGAAACAAAATTGTAAAGAGAAAGTACAAGAGAGGGATTACTATGATCAATAGAATTATATCAAATTCTTGTAAACAATGA

mRNA sequence

ATGGTAAATGGTAGAGGAACCACAAACCAACCAAATCGGGGTCAAGGTCATAGTGGAAATCTGTTTAGCAACCAACGTGGTAGAGGTCAGTTTAGGCCCATTTGTCAAGTTTACACGAAAATTGGTCACACTACATATGTGTTTTGCAATCGATTTAATAAGGATTTTGTTCCTAACTTAGGCTCTAATCGAAACAATCCTTGCAACAACAATAACAAAGCTCCAGTAGCCTTGGTGGTAGTCAGCAGTAACAACCCGTTTGTTTCTAACAACGACAATGACATTGATCCAAACTGGTATGACAGCAGGGCAACTGTTGTGTCGAAATTTGGTAGTGTAGTAGAGAGTAGGTTATTAGTAATAGGGGGGGGGGGGATTGTTGATGGAAGAAACAAAATTGTAAAGAGAAAGTACAAGAGAGGGATTACTATGATCAATAGAATTATATCAAATTCTTGTAAACAATGA

Coding sequence (CDS)

ATGGTAAATGGTAGAGGAACCACAAACCAACCAAATCGGGGTCAAGGTCATAGTGGAAATCTGTTTAGCAACCAACGTGGTAGAGGTCAGTTTAGGCCCATTTGTCAAGTTTACACGAAAATTGGTCACACTACATATGTGTTTTGCAATCGATTTAATAAGGATTTTGTTCCTAACTTAGGCTCTAATCGAAACAATCCTTGCAACAACAATAACAAAGCTCCAGTAGCCTTGGTGGTAGTCAGCAGTAACAACCCGTTTGTTTCTAACAACGACAATGACATTGATCCAAACTGGTATGACAGCAGGGCAACTGTTGTGTCGAAATTTGGTAGTGTAGTAGAGAGTAGGTTATTAGTAATAGGGGGGGGGGGGATTGTTGATGGAAGAAACAAAATTGTAAAGAGAAAGTACAAGAGAGGGATTACTATGATCAATAGAATTATATCAAATTCTTGTAAACAATGA

Protein sequence

MVNGRGTTNQPNRGQGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDFVPNLGSNRNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWYDSRATVVSKFGSVVESRLLVIGGGGIVDGRNKIVKRKYKRGITMINRIISNSCKQ

Homology

[Close]

BLAST of PI0004919 vs. ExPASy TrEMBL
Match: A0A5A7UCN8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00470 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.1e-29
Identity = 86/161 (53.42%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MVNGRGTTNQPNRGQGHSGNLFSNQ----------RGRGQFRPICQVYTKIGHTTYVFCN 60
           +VNGRGT NQPN+GQG S NLF+NQ          RGR  FRPICQV TKIGHT  V  N
Sbjct: 32  IVNGRGTMNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYN 91

Query: 61  RFNKDFVPNLGSNR----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY-DSRAT 120
           +F+K+FV NLGSN+    NNP  NN KA VALV  +SNNPF+S +DN IDPNWY D  AT
Sbjct: 92  QFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGAT 151

Query: 121 --VVSKFG---SVVESRLLVIGGGGIVDGRNKIVKRKYKRG 142
             V S++    ++VE   LV GG   +  ++  V R  K G
Sbjct: 152 NHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIG 192

[Close]

BLAST of PI0004919 vs. ExPASy TrEMBL
Match: A0A5D3BL83 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00070 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2   VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
           V+ RG++N   +G       G+ GN     RGRG+    F P C+V  KIGHT  +  NR
Sbjct: 35  VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94

Query: 62  FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
           FNK FVPN G N      NN  NNN+K   A V     NPF    +N +D NWY
Sbjct: 95  FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148

[Close]

BLAST of PI0004919 vs. ExPASy TrEMBL
Match: A0A5A7UEH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003510 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2   VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
           V+ RG++N   +G       G+ GN     RGRG+    F P C+V  KIGHT  +  NR
Sbjct: 35  VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94

Query: 62  FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
           FNK FVPN G N      NN  NNN+K   A V     NPF    +N +D NWY
Sbjct: 95  FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148

[Close]

BLAST of PI0004919 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 6   GTTNQPNRG-QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDFVPNLGSNR 65
           G  NQ N+   G++   FS QRG     P CQ+  K GH+  V  NRFNK+F   L  NR
Sbjct: 232 GQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 291

Query: 66  NNPCNNNNKAPVALVVVSSNN--PFVSNNDNDIDPNWY-DSRAT 106
           N   +N + +P   V VS+ N  PF +  D  +DPNWY DS AT
Sbjct: 292 NEHSSNGSVSPNPAVFVSTQNATPF-ATPDTVVDPNWYIDSGAT 334

[Close]

BLAST of PI0004919 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 6   GTTNQPNRG-QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDFVPNLGSNR 65
           G  NQ N+   G++   FS QRG     P CQ+  K GH+  V  NRFNK+F   L  NR
Sbjct: 232 GQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 291

Query: 66  NNPCNNNNKAPVALVVVSSNN--PFVSNNDNDIDPNWY-DSRAT 106
           N   +N + +P   V VS+ N  PF +  D  +DPNWY DS AT
Sbjct: 292 NEHSSNGSVSPNPAVFVSTQNATPF-ATPDTVVDPNWYIDSGAT 334

[Close]

BLAST of PI0004919 vs. NCBI nr
Match: KAA0053532.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK19127.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 86/161 (53.42%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MVNGRGTTNQPNRGQGHSGNLFSNQ----------RGRGQFRPICQVYTKIGHTTYVFCN 60
           +VNGRGT NQPN+GQG S NLF+NQ          RGR  FRPICQV TKIGHT  V  N
Sbjct: 32  IVNGRGTMNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYN 91

Query: 61  RFNKDFVPNLGSNR----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY-DSRAT 120
           +F+K+FV NLGSN+    NNP  NN KA VALV  +SNNPF+S +DN IDPNWY D  AT
Sbjct: 92  QFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGAT 151

Query: 121 --VVSKFG---SVVESRLLVIGGGGIVDGRNKIVKRKYKRG 142
             V S++    ++VE   LV GG   +  ++  V R  K G
Sbjct: 152 NHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIG 192

[Close]

BLAST of PI0004919 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-10
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 2   VNGRGTTNQPNRG-----QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDF 61
           VN    TN  N+      +G  G+     RGR   +P+CQV  K+GH  +   NR+++DF
Sbjct: 209 VNQNNKTNSSNQSIGGGQRGGGGHGRGRGRGRNNKKPVCQVCGKVGHIAFYCFNRYSRDF 268

Query: 62  VPNLGSNR-----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWYDSRAT--VVSK 114
           VPN   N+     NN   N    P AL +   +NPF++  +N  D NWYDS A+  V S 
Sbjct: 269 VPNSPQNKVEPFPNNQTKNTQPHPTALAIAYGSNPFLTRQENMTDANWYDSGASNHVTSD 328

[Close]

BLAST of PI0004919 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-10
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 2   VNGRGTTNQPNRG-----QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDF 61
           VN    TN  N+      +G  G+     RGR   +P+CQV  K+GH  +   NR+++DF
Sbjct: 209 VNQNNKTNSSNQSIGGGQRGGGGHGRGRGRGRNNKKPVCQVCGKVGHIAFYCFNRYSRDF 268

Query: 62  VPNLGSNR-----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWYDSRAT--VVSK 114
           VPN   N+     NN   N    P AL +   +NPF++  +N  D NWYDS A+  V S 
Sbjct: 269 VPNSPQNKVEPFPNNQTKNTQPHPTALAIAYGSNPFLTRQENMTDANWYDSGASNHVTSD 328

[Close]

BLAST of PI0004919 vs. NCBI nr
Match: TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2   VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
           V+ RG++N   +G       G+ GN     RGRG+    F P C+V  KIGHT  +  NR
Sbjct: 35  VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94

Query: 62  FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
           FNK FVPN G N      NN  NNN+K   A V     NPF    +N +D NWY
Sbjct: 95  FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148

[Close]

BLAST of PI0004919 vs. NCBI nr
Match: KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2   VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
           V+ RG++N   +G       G+ GN     RGRG+    F P C+V  KIGHT  +  NR
Sbjct: 35  VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94

Query: 62  FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
           FNK FVPN G N      NN  NNN+K   A V     NPF    +N +D NWY
Sbjct: 95  FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148

The following BLAST results are available for this feature:

BLAST of PI0004919 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCN8	8.1e-29	53.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL83	6.4e-10	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UEH3	6.4e-10	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S4E1U6	6.6e-07	43.27	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1V2	6.6e-07	43.27	uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of PI0004919 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053532.1	1.7e-28	53.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038905164.1	4.6e-10	36.29	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	4.6e-10	36.29	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]
TYJ99887.1	1.3e-09	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0051899.1	1.3e-09	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of PI0004919 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004919.1	PI0004919.1	mRNA