Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATGGTAGAGGAACCACAAACCAACCAAATCGGGGTCAAGGTCATAGTGGAAATCTGTTTAGCAACCAACGTGGTGCTAACTCCTTAGGAAATTGACGAAGAGGTAGAGGTCAGTTTAGGCCCATTTGTCAAGTTTACACGAAAATTGGTCACACTACATATGTGTTTTGCAATCGATTTAATAAGGATTTTGTTCCTAACTTAGGCTCTAATCGAAACAATCCTTGCAACAACAATAACAAAGCTCCAGTAGCCTTGGTGGTAGTCAGCAGTAACAACCCGTTTGTTTCTAACAACGACAATGACATTGATCCAAACTGGTATGACAGCAGGGCAACTGTTGTGTCGAAATTTGGTAGTGTAGTAGAGAGTAGGGTTGTCGTACCCAAGGGAGCAACTTGCGACTTCAAGATGAATTAAGTAAGTTCAATTATGAGAAGAAAGCTTCAAGATACAAACAAAGTTATTAGTAATAGGGGGGGGGGGGATTGTTGATGGAAGAAACAAAATTGTAAAGAGAAAGTACAAGAGAGGGATTACTATGATCAATAGAATTATATCAAATTCTTGTAAACAATGA
mRNA sequence
ATGGTAAATGGTAGAGGAACCACAAACCAACCAAATCGGGGTCAAGGTCATAGTGGAAATCTGTTTAGCAACCAACGTGGTAGAGGTCAGTTTAGGCCCATTTGTCAAGTTTACACGAAAATTGGTCACACTACATATGTGTTTTGCAATCGATTTAATAAGGATTTTGTTCCTAACTTAGGCTCTAATCGAAACAATCCTTGCAACAACAATAACAAAGCTCCAGTAGCCTTGGTGGTAGTCAGCAGTAACAACCCGTTTGTTTCTAACAACGACAATGACATTGATCCAAACTGGTATGACAGCAGGGCAACTGTTGTGTCGAAATTTGGTAGTGTAGTAGAGAGTAGGTTATTAGTAATAGGGGGGGGGGGGATTGTTGATGGAAGAAACAAAATTGTAAAGAGAAAGTACAAGAGAGGGATTACTATGATCAATAGAATTATATCAAATTCTTGTAAACAATGA
Coding sequence (CDS)
ATGGTAAATGGTAGAGGAACCACAAACCAACCAAATCGGGGTCAAGGTCATAGTGGAAATCTGTTTAGCAACCAACGTGGTAGAGGTCAGTTTAGGCCCATTTGTCAAGTTTACACGAAAATTGGTCACACTACATATGTGTTTTGCAATCGATTTAATAAGGATTTTGTTCCTAACTTAGGCTCTAATCGAAACAATCCTTGCAACAACAATAACAAAGCTCCAGTAGCCTTGGTGGTAGTCAGCAGTAACAACCCGTTTGTTTCTAACAACGACAATGACATTGATCCAAACTGGTATGACAGCAGGGCAACTGTTGTGTCGAAATTTGGTAGTGTAGTAGAGAGTAGGTTATTAGTAATAGGGGGGGGGGGGATTGTTGATGGAAGAAACAAAATTGTAAAGAGAAAGTACAAGAGAGGGATTACTATGATCAATAGAATTATATCAAATTCTTGTAAACAATGA
Protein sequence
MVNGRGTTNQPNRGQGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDFVPNLGSNRNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWYDSRATVVSKFGSVVESRLLVIGGGGIVDGRNKIVKRKYKRGITMINRIISNSCKQ
Homology
BLAST of PI0004919 vs. ExPASy TrEMBL
Match:
A0A5A7UCN8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00470 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 8.1e-29
Identity = 86/161 (53.42%), Postives = 103/161 (63.98%), Query Frame = 0
Query: 1 MVNGRGTTNQPNRGQGHSGNLFSNQ----------RGRGQFRPICQVYTKIGHTTYVFCN 60
+VNGRGT NQPN+GQG S NLF+NQ RGR FRPICQV TKIGHT V N
Sbjct: 32 IVNGRGTMNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYN 91
Query: 61 RFNKDFVPNLGSNR----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY-DSRAT 120
+F+K+FV NLGSN+ NNP NN KA VALV +SNNPF+S +DN IDPNWY D AT
Sbjct: 92 QFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGAT 151
Query: 121 --VVSKFG---SVVESRLLVIGGGGIVDGRNKIVKRKYKRG 142
V S++ ++VE LV GG + ++ V R K G
Sbjct: 152 NHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIG 192
BLAST of PI0004919 vs. ExPASy TrEMBL
Match:
A0A5D3BL83 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00070 PE=4 SV=1)
HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0
Query: 2 VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
V+ RG++N +G G+ GN RGRG+ F P C+V KIGHT + NR
Sbjct: 35 VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94
Query: 62 FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
FNK FVPN G N NN NNN+K A V NPF +N +D NWY
Sbjct: 95 FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148
BLAST of PI0004919 vs. ExPASy TrEMBL
Match:
A0A5A7UEH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003510 PE=4 SV=1)
HSP 1 Score: 73.9 bits (180), Expect = 6.4e-10
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0
Query: 2 VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
V+ RG++N +G G+ GN RGRG+ F P C+V KIGHT + NR
Sbjct: 35 VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94
Query: 62 FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
FNK FVPN G N NN NNN+K A V NPF +N +D NWY
Sbjct: 95 FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148
BLAST of PI0004919 vs. ExPASy TrEMBL
Match:
A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0
Query: 6 GTTNQPNRG-QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDFVPNLGSNR 65
G NQ N+ G++ FS QRG P CQ+ K GH+ V NRFNK+F L NR
Sbjct: 232 GQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 291
Query: 66 NNPCNNNNKAPVALVVVSSNN--PFVSNNDNDIDPNWY-DSRAT 106
N +N + +P V VS+ N PF + D +DPNWY DS AT
Sbjct: 292 NEHSSNGSVSPNPAVFVSTQNATPF-ATPDTVVDPNWYIDSGAT 334
BLAST of PI0004919 vs. ExPASy TrEMBL
Match:
A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0
Query: 6 GTTNQPNRG-QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDFVPNLGSNR 65
G NQ N+ G++ FS QRG P CQ+ K GH+ V NRFNK+F L NR
Sbjct: 232 GQRNQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 291
Query: 66 NNPCNNNNKAPVALVVVSSNN--PFVSNNDNDIDPNWY-DSRAT 106
N +N + +P V VS+ N PF + D +DPNWY DS AT
Sbjct: 292 NEHSSNGSVSPNPAVFVSTQNATPF-ATPDTVVDPNWYIDSGAT 334
BLAST of PI0004919 vs. NCBI nr
Match:
KAA0053532.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK19127.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 86/161 (53.42%), Postives = 103/161 (63.98%), Query Frame = 0
Query: 1 MVNGRGTTNQPNRGQGHSGNLFSNQ----------RGRGQFRPICQVYTKIGHTTYVFCN 60
+VNGRGT NQPN+GQG S NLF+NQ RGR FRPICQV TKIGHT V N
Sbjct: 32 IVNGRGTMNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYN 91
Query: 61 RFNKDFVPNLGSNR----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY-DSRAT 120
+F+K+FV NLGSN+ NNP NN KA VALV +SNNPF+S +DN IDPNWY D AT
Sbjct: 92 QFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGAT 151
Query: 121 --VVSKFG---SVVESRLLVIGGGGIVDGRNKIVKRKYKRG 142
V S++ ++VE LV GG + ++ V R K G
Sbjct: 152 NHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIG 192
BLAST of PI0004919 vs. NCBI nr
Match:
XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])
HSP 1 Score: 75.5 bits (184), Expect = 4.6e-10
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0
Query: 2 VNGRGTTNQPNRG-----QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDF 61
VN TN N+ +G G+ RGR +P+CQV K+GH + NR+++DF
Sbjct: 209 VNQNNKTNSSNQSIGGGQRGGGGHGRGRGRGRNNKKPVCQVCGKVGHIAFYCFNRYSRDF 268
Query: 62 VPNLGSNR-----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWYDSRAT--VVSK 114
VPN N+ NN N P AL + +NPF++ +N D NWYDS A+ V S
Sbjct: 269 VPNSPQNKVEPFPNNQTKNTQPHPTALAIAYGSNPFLTRQENMTDANWYDSGASNHVTSD 328
BLAST of PI0004919 vs. NCBI nr
Match:
XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])
HSP 1 Score: 75.5 bits (184), Expect = 4.6e-10
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0
Query: 2 VNGRGTTNQPNRG-----QGHSGNLFSNQRGRGQFRPICQVYTKIGHTTYVFCNRFNKDF 61
VN TN N+ +G G+ RGR +P+CQV K+GH + NR+++DF
Sbjct: 209 VNQNNKTNSSNQSIGGGQRGGGGHGRGRGRGRNNKKPVCQVCGKVGHIAFYCFNRYSRDF 268
Query: 62 VPNLGSNR-----NNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWYDSRAT--VVSK 114
VPN N+ NN N P AL + +NPF++ +N D NWYDS A+ V S
Sbjct: 269 VPNSPQNKVEPFPNNQTKNTQPHPTALAIAYGSNPFLTRQENMTDANWYDSGASNHVTSD 328
BLAST of PI0004919 vs. NCBI nr
Match:
TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0
Query: 2 VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
V+ RG++N +G G+ GN RGRG+ F P C+V KIGHT + NR
Sbjct: 35 VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94
Query: 62 FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
FNK FVPN G N NN NNN+K A V NPF +N +D NWY
Sbjct: 95 FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148
BLAST of PI0004919 vs. NCBI nr
Match:
KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 48/114 (42.11%), Postives = 59/114 (51.75%), Query Frame = 0
Query: 2 VNGRGTTNQPNRG------QGHSGNLFSNQRGRGQ----FRPICQVYTKIGHTTYVFCNR 61
V+ RG++N +G G+ GN RGRG+ F P C+V KIGHT + NR
Sbjct: 35 VSNRGSSNHTPQGCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNR 94
Query: 62 FNKDFVPNLGSN-----RNNPCNNNNKAPVALVVVSSNNPFVSNNDNDIDPNWY 101
FNK FVPN G N NN NNN+K A V NPF +N +D NWY
Sbjct: 95 FNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSVDANWY 148
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UCN8 | 8.1e-29 | 53.42 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3BL83 | 6.4e-10 | 42.11 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UEH3 | 6.4e-10 | 42.11 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A1S4E1U6 | 6.6e-07 | 43.27 | uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A1S4E1V2 | 6.6e-07 | 43.27 | uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
Match Name | E-value | Identity | Description | |
KAA0053532.1 | 1.7e-28 | 53.42 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
XP_038905164.1 | 4.6e-10 | 36.29 | uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida] | [more] |
XP_038905161.1 | 4.6e-10 | 36.29 | uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida] | [more] |
TYJ99887.1 | 1.3e-09 | 42.11 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0051899.1 | 1.3e-09 | 42.11 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |