PI0004872 (gene) Melon (PI 482460) v1

Overview
NamePI0004872
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr04: 4031888 .. 4033356 (+)
RNA-Seq ExpressionPI0004872
SyntenyPI0004872
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATTGAACAAAAAAATTTGGTATGGTAAAAGAGATTGTATATAGAATGTCATGTGATTCTATCGTGTCGCAAAATTACTATGGTAAATCAAATTTTATTTAATCTTTTATCCACTGATTAGTCCACTCTTTTACATTCCGCTATACATTATCGTAACAAGTTGAACTCATATATTAATTATTCATTTAAGGAAAAATCACAGTTAAATGATATACACGATAATTTATGGCTAAAATTTAAACAAAAACAATCTTATCACAGTTCAATAAAAGGTCGTTTACTTTTTACATTACCATTTTTTACAAACTTTCAATGTACCAATAAGCAACACATTGTATAGATCAAAATGATCCGTATCATATGATTCTTTTTCATTTAATTTTTTAAAATTTTTTGAAAAATTGAAACTATTTACCATGAGAATTTTTCTTTAAGATGTATAATCCTTTTAAATGAATTATAGACAATAAAATCTATCAAAATAATATCTTATAGATTTCGAAAAATATTAACCTTTTGATTAAATGAAGAATAACATAAAAGAATAATACCTAAAAAAGATTAAAAATGGAAATAAATAATAATAAAAAATATTTTGATCAAAATATATTCACTCTCTCTCAGTCTTTCATATATATCTTTAAGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCAGCCGTGAGAGTTGTGTTCCGCCGTCGACGGAGAAGTTTTCTTCCTCACAAACTCCCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGTACTATGAAATATAACATAGTATTCTCTTGTCTGATCGTAAATCCGTCTTTACATTCGTGATTTTTGATCTCGTTCTTCATCGCATTCGCTTTGGCTTTCGTATTTTTTGGCTGATAAAAGAGGACTAGTTACGACTTACGAGCTTACTAGAGAAACTTAGTTATGTGTTCAAGATTGTCTAGCATATATGATAGAAATTTTATTTGTCAATGGTGGTTTAATCCGTGGAGTTTTCGGGTCCTGTGTTAGTCTAGGAGCAGTAAAGGTTCGTTTATTTTTGTTCAAATTGACGGTGAATATAGTTTATTTTATATTTAGCTCTTATGGTTTGAGACAGACAATTCTCGGTGGAATGTTCCAATTTCTATCTGATTATCCTGTGAGTCGTGGATTGGAATGTTCACCTCTGAGTGCTTTTCACTCTATTGAAGTGAAATTGTTAGTGTTGAGCTAAAATACTGTTTGTTATCGTGTCTTTTATTTAATTTTTTCTTGCTGTGTAGTTTGGTTCTGATCATTGGTAATATGTAAATTGTTGGAGCACAAAAAGTTAGTCAATCTTATGCAATGTTGGATCTCTTGATTATGTAGGGGGGTGTTTACTCTATTAGAGCTAATAAATGA

mRNA sequence

ATGTCAATTGAACAAAAAAATTTGGTATGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCAGCCGTGAGAGTTGTGTTCCGCCGTCGACGGAGAAGTTTTCTTCCTCACAAACTCCCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGGGGGTGTTTACTCTATTAGAGCTAATAAATGA

Coding sequence (CDS)

ATGTCAATTGAACAAAAAAATTTGGTATGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCAGCCGTGAGAGTTGTGTTCCGCCGTCGACGGAGAAGTTTTCTTCCTCACAAACTCCCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGGGGGTGTTTACTCTATTAGAGCTAATAAATGA

Protein sequence

MSIEQKNLVCSGVLSLCFFIIVDVKRALQFRSPIKASAVRVVFRRRRRSFLPHKLPYFFIVLLEFRESSVCSAKGGVYSIRANK
Homology
[Close]
BLAST of PI0004872 vs. ExPASy TrEMBL
Match: A0A0A0LFP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736790 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 60/84 (71.43%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1  MSIEQKNLVCSGVLSLCFFIIVDVKRALQFRSPIKASAVRVVFRRRRRSFLPHKLPYFFI 60
          MSIEQ            F      K  LQFRSPIKASAVRV FRRRRR FL HKLPYFFI
Sbjct: 1  MSIEQSFRHALAFSRSVFSSSSTSKELLQFRSPIKASAVRVAFRRRRRIFLAHKLPYFFI 60

Query: 61 VLLEFRESSVCSAKGGVYSIRANK 85
          VLLEFRESSVCSAK GVYSIRANK
Sbjct: 61 VLLEFRESSVCSAKEGVYSIRANK 84

[Close]
BLAST of PI0004872 vs. NCBI nr
Match: KGN58931.1 (hypothetical protein Csa_001835 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-19
Identity = 60/84 (71.43%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1  MSIEQKNLVCSGVLSLCFFIIVDVKRALQFRSPIKASAVRVVFRRRRRSFLPHKLPYFFI 60
          MSIEQ            F      K  LQFRSPIKASAVRV FRRRRR FL HKLPYFFI
Sbjct: 1  MSIEQSFRHALAFSRSVFSSSSTSKELLQFRSPIKASAVRVAFRRRRRIFLAHKLPYFFI 60

Query: 61 VLLEFRESSVCSAKGGVYSIRANK 85
          VLLEFRESSVCSAK GVYSIRANK
Sbjct: 61 VLLEFRESSVCSAKEGVYSIRANK 84

The following BLAST results are available for this feature:
BLAST of PI0004872 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFP61.8e-1971.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736790 PE=4 SV=1[more]
BLAST of PI0004872 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58931.13.8e-1971.43hypothetical protein Csa_001835 [Cucumis sativus][more]
BLAST of PI0004872 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004872.1PI0004872.1mRNA