PI0004872.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0004872.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 4031888 .. 4033356 (+)
Sequence length	255
RNA-Seq Expression	PI0004872.1
Synteny	PI0004872.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTGAACAAAAAAATTTGGTATGGTAAAAGAGATTGTATATAGAATGTCATGTGATTCTATCGTGTCGCAAAATTACTATGGTAAATCAAATTTTATTTAATCTTTTATCCACTGATTAGTCCACTCTTTTACATTCCGCTATACATTATCGTAACAAGTTGAACTCATATATTAATTATTCATTTAAGGAAAAATCACAGTTAAATGATATACACGATAATTTATGGCTAAAATTTAAACAAAAACAATCTTATCACAGTTCAATAAAAGGTCGTTTACTTTTTACATTACCATTTTTTACAAACTTTCAATGTACCAATAAGCAACACATTGTATAGATCAAAATGATCCGTATCATATGATTCTTTTTCATTTAATTTTTTAAAATTTTTTGAAAAATTGAAACTATTTACCATGAGAATTTTTCTTTAAGATGTATAATCCTTTTAAATGAATTATAGACAATAAAATCTATCAAAATAATATCTTATAGATTTCGAAAAATATTAACCTTTTGATTAAATGAAGAATAACATAAAAGAATAATACCTAAAAAAGATTAAAAATGGAAATAAATAATAATAAAAAATATTTTGATCAAAATATATTCACTCTCTCTCAGTCTTTCATATATATCTTTAAGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCAGCCGTGAGAGTTGTGTTCCGCCGTCGACGGAGAAGTTTTCTTCCTCACAAACTCCCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGTACTATGAAATATAACATAGTATTCTCTTGTCTGATCGTAAATCCGTCTTTACATTCGTGATTTTTGATCTCGTTCTTCATCGCATTCGCTTTGGCTTTCGTATTTTTTGGCTGATAAAAGAGGACTAGTTACGACTTACGAGCTTACTAGAGAAACTTAGTTATGTGTTCAAGATTGTCTAGCATATATGATAGAAATTTTATTTGTCAATGGTGGTTTAATCCGTGGAGTTTTCGGGTCCTGTGTTAGTCTAGGAGCAGTAAAGGTTCGTTTATTTTTGTTCAAATTGACGGTGAATATAGTTTATTTTATATTTAGCTCTTATGGTTTGAGACAGACAATTCTCGGTGGAATGTTCCAATTTCTATCTGATTATCCTGTGAGTCGTGGATTGGAATGTTCACCTCTGAGTGCTTTTCACTCTATTGAAGTGAAATTGTTAGTGTTGAGCTAAAATACTGTTTGTTATCGTGTCTTTTATTTAATTTTTTCTTGCTGTGTAGTTTGGTTCTGATCATTGGTAATATGTAAATTGTTGGAGCACAAAAAGTTAGTCAATCTTATGCAATGTTGGATCTCTTGATTATGTAGGGGGGTGTTTACTCTATTAGAGCTAATAAATGA

mRNA sequence

ATGTCAATTGAACAAAAAAATTTGGTATGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCAGCCGTGAGAGTTGTGTTCCGCCGTCGACGGAGAAGTTTTCTTCCTCACAAACTCCCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGGGGGTGTTTACTCTATTAGAGCTAATAAATGA

Coding sequence (CDS)

ATGTCAATTGAACAAAAAAATTTGGTATGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCAGCCGTGAGAGTTGTGTTCCGCCGTCGACGGAGAAGTTTTCTTCCTCACAAACTCCCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGGGGGTGTTTACTCTATTAGAGCTAATAAATGA

Protein sequence

MSIEQKNLVCSGVLSLCFFIIVDVKRALQFRSPIKASAVRVVFRRRRRSFLPHKLPYFFIVLLEFRESSVCSAKGGVYSIRANK

Homology

[Close]

BLAST of PI0004872.1 vs. ExPASy TrEMBL
Match: A0A0A0LFP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736790 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 60/84 (71.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1  MSIEQKNLVCSGVLSLCFFIIVDVKRALQFRSPIKASAVRVVFRRRRRSFLPHKLPYFFI 60
          MSIEQ            F      K  LQFRSPIKASAVRV FRRRRR FL HKLPYFFI
Sbjct: 1  MSIEQSFRHALAFSRSVFSSSSTSKELLQFRSPIKASAVRVAFRRRRRIFLAHKLPYFFI 60

Query: 61 VLLEFRESSVCSAKGGVYSIRANK 85
          VLLEFRESSVCSAK GVYSIRANK
Sbjct: 61 VLLEFRESSVCSAKEGVYSIRANK 84

[Close]

BLAST of PI0004872.1 vs. NCBI nr
Match: KGN58931.1 (hypothetical protein Csa_001835 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-19
Identity = 60/84 (71.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1  MSIEQKNLVCSGVLSLCFFIIVDVKRALQFRSPIKASAVRVVFRRRRRSFLPHKLPYFFI 60
          MSIEQ            F      K  LQFRSPIKASAVRV FRRRRR FL HKLPYFFI
Sbjct: 1  MSIEQSFRHALAFSRSVFSSSSTSKELLQFRSPIKASAVRVAFRRRRRIFLAHKLPYFFI 60

Query: 61 VLLEFRESSVCSAKGGVYSIRANK 85
          VLLEFRESSVCSAK GVYSIRANK
Sbjct: 61 VLLEFRESSVCSAKEGVYSIRANK 84

The following BLAST results are available for this feature:

BLAST of PI0004872.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004872.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFP6	1.8e-19	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736790 PE=4 SV=1	[more]

BLAST of PI0004872.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58931.1	3.8e-19	71.43	hypothetical protein Csa_001835 [Cucumis sativus]	[more]

BLAST of PI0004872.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0004872	PI0004872	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0004872.1-exon	PI0004872.1-exon-chr04:4031888..4031916	exon
PI0004872.1-exon	PI0004872.1-exon-chr04:4032538..4032730	exon
PI0004872.1-exon	PI0004872.1-exon-chr04:4033324..4033356	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0004872.1-cds	PI0004872.1-cds-chr04:4031888..4031916	CDS
PI0004872.1-cds	PI0004872.1-cds-chr04:4032538..4032730	CDS
PI0004872.1-cds	PI0004872.1-cds-chr04:4033324..4033356	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0004872.1	PI0004872.1-protein	polypeptide