Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA
mRNA sequence
ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA
Coding sequence (CDS)
ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA
Protein sequence
MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ
Homology
BLAST of PI0003496 vs. ExPASy TrEMBL
Match:
A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN++I+D++DEGDSTYATTGG+EI+YIE S+ WS+WRD+LA MFSDW+L+ Q
Sbjct: 271 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQWQ 324
BLAST of PI0003496 vs. ExPASy TrEMBL
Match:
A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN DI D +DE DST+ATT ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214
BLAST of PI0003496 vs. ExPASy TrEMBL
Match:
A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN DI D +DE DST+ATT ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307
BLAST of PI0003496 vs. ExPASy TrEMBL
Match:
A0A5D3BQ11 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00510 PE=3 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRN 54
MTN DILD++DE DST+ TT G++IHYIET + W+QWRDELA+ MFSDW+LRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220
BLAST of PI0003496 vs. ExPASy TrEMBL
Match:
A0A5A7U033 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00950 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN DILD++DE DST+ TT ++IHYI+TS+ WSQWRDELA+ MFSDW+LRN+
Sbjct: 1 MTNFDILDDIDEVDSTHETTASDDIHYIDTSNEWSQWRDELADEMFSDWELRNK 54
BLAST of PI0003496 vs. NCBI nr
Match:
KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN++I+D++DEGDSTYATTGG+EI+YIE S+ WS+WRD+LA MFSDW+L+ Q
Sbjct: 271 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQWQ 324
BLAST of PI0003496 vs. NCBI nr
Match:
KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN DI D +DE DST+ATT ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307
BLAST of PI0003496 vs. NCBI nr
Match:
TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN DI D +DE DST+ATT ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214
BLAST of PI0003496 vs. NCBI nr
Match:
KAA0033880.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRN 54
MTN DILD++DE DST+ TT G++IHYIET + W+QWRDELA+ MFSDW+LRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220
BLAST of PI0003496 vs. NCBI nr
Match:
KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 1 MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
MTN DI D +DE DST+ATT ++IHYIETS+ WSQWRD+LAE MF+DW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DG22 | 5.7e-14 | 68.52 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BL48 | 5.7e-14 | 72.22 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7VJX3 | 5.7e-14 | 72.22 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BQ11 | 7.4e-14 | 69.81 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7U033 | 7.4e-14 | 68.52 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0062747.1 | 1.2e-13 | 68.52 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... | [more] |
| KAA0067470.1 | 1.2e-13 | 72.22 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYJ99699.1 | 1.2e-13 | 72.22 | putative nuclease HARBI1 [Cucumis melo var. makuwa] | [more] |
| KAA0033880.1 | 1.5e-13 | 69.81 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nucleas... | [more] |
| KAA0054126.1 | 1.5e-13 | 70.37 | putative nuclease HARBI1 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
