PI0003496.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0003496.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr02: 19369866 .. 19370030 (+)
Sequence length	165
RNA-Seq Expression	PI0003496.1
Synteny	PI0003496.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA

Protein sequence

MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ

Homology

[Close]

BLAST of PI0003496.1 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN++I+D++DEGDSTYATTGG+EI+YIE S+ WS+WRD+LA  MFSDW+L+ Q
Sbjct: 271 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQWQ 324

[Close]

BLAST of PI0003496.1 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0003496.1 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0003496.1 vs. ExPASy TrEMBL
Match: A0A5D3BQ11 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00510 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRN 54
           MTN DILD++DE DST+ TT G++IHYIET + W+QWRDELA+ MFSDW+LRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

[Close]

BLAST of PI0003496.1 vs. ExPASy TrEMBL
Match: A0A5A7U033 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00950 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
          MTN DILD++DE DST+ TT  ++IHYI+TS+ WSQWRDELA+ MFSDW+LRN+
Sbjct: 1  MTNFDILDDIDEVDSTHETTASDDIHYIDTSNEWSQWRDELADEMFSDWELRNK 54

[Close]

BLAST of PI0003496.1 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN++I+D++DEGDSTYATTGG+EI+YIE S+ WS+WRD+LA  MFSDW+L+ Q
Sbjct: 271 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQWQ 324

[Close]

BLAST of PI0003496.1 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0003496.1 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0003496.1 vs. NCBI nr
Match: KAA0033880.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRN 54
           MTN DILD++DE DST+ TT G++IHYIET + W+QWRDELA+ MFSDW+LRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

[Close]

BLAST of PI0003496.1 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MF+DW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

The following BLAST results are available for this feature:

BLAST of PI0003496.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003496.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG22	5.7e-14	68.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BL48	5.7e-14	72.22	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	5.7e-14	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BQ11	7.4e-14	69.81	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U033	7.4e-14	68.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0003496.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062747.1	1.2e-13	68.52	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0067470.1	1.2e-13	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	1.2e-13	72.22	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0033880.1	1.5e-13	69.81	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nucleas...	[more]
KAA0054126.1	1.5e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0003496.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0003496	PI0003496	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003496.1-exon	PI0003496.1-exon-chr02:19369866..19370030	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003496.1-cds	PI0003496.1-cds-chr02:19369866..19370030	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0003496.1	PI0003496.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding