Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTTCGAAGTTTCTTATCGTATCCATAGTTGTCTTGGTGATGTTCGTTTGTTGTGTTTCATCAACAAGTATGTGTTTTTATCTCATAATTAACTCTTTTGATTTCATTTCGCGTCTTGGAATGTTTTCCAAAACAATAATTTAACATTAATCTGTGATCTTATGCAGTTGAACGGGACATCTACATGAGTTGTATTCGACCATGTTCTGACAACTACGACGATGATTCATGTTATTATGATTGCATCCGAAATAATAAAGCCGTCGGATTTTGTTATCCCAAGCTACCTAGCATTTCTAATGAAAAAGATTGTTGTTGCAATAACTGA
mRNA sequence
ATGGCATCTTCGAAGTTTCTTATCGTATCCATAGTTGTCTTGGTGATGTTCGTTTGTTGTGTTTCATCAACAATTGAACGGGACATCTACATGAGTTGTATTCGACCATGTTCTGACAACTACGACGATGATTCATGTTATTATGATTGCATCCGAAATAATAAAGCCGTCGGATTTTGTTATCCCAAGCTACCTAGCATTTCTAATGAAAAAGATTGTTGTTGCAATAACTGA
Coding sequence (CDS)
ATGGCATCTTCGAAGTTTCTTATCGTATCCATAGTTGTCTTGGTGATGTTCGTTTGTTGTGTTTCATCAACAATTGAACGGGACATCTACATGAGTTGTATTCGACCATGTTCTGACAACTACGACGATGATTCATGTTATTATGATTGCATCCGAAATAATAAAGCCGTCGGATTTTGTTATCCCAAGCTACCTAGCATTTCTAATGAAAAAGATTGTTGTTGCAATAACTGA
Protein sequence
MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFCYPKLPSISNEKDCCCNN
Homology
BLAST of PI0002967 vs. ExPASy TrEMBL
Match:
A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
MA+ K +SIVVLV+F C VS+T + + C+RPC D YDD+SCY DCIR N GFC
Sbjct: 1 MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60
Query: 61 YPKLPSISNEKDCCCNN 78
YPKLP S +KDCCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75
BLAST of PI0002967 vs. ExPASy TrEMBL
Match:
A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 8.7e-16
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
MA+ K +SIVVL++F C S+T + + C+RPCSD YDD+SCY DCI+ N GFC
Sbjct: 1 MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
Query: 61 YPKLPSISNEKDCCCN 77
YPKLP S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74
BLAST of PI0002967 vs. ExPASy TrEMBL
Match:
A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 7.6e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0
Query: 33 CIRPCSDNYDDDSCYYDCIRNNKAVGFCYPKLPSISNEKDCCCN 77
C+RPCSD YDD+SCY DCIR N GFCYPKLP S +KDCCCN
Sbjct: 12 CVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53
BLAST of PI0002967 vs. ExPASy TrEMBL
Match:
A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
M + K IVS++V V F C +S++E D +C+ PCS+N D C CI ++ GFC
Sbjct: 1 MVTQKLFIVSMLVAVTF-SCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
Query: 61 YPKLPSISNEKDCCCNN 78
PKLP IS+ K CCCNN
Sbjct: 61 VPKLPGISDMKVCCCNN 76
BLAST of PI0002967 vs. NCBI nr
Match:
KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
MAS K V +V++MF +S+ + D++M CIRPC D +DDDSCY DC+R NK GFC
Sbjct: 1 MASRKLFTVFAIVMMMFY--FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
Query: 61 YPKLPSISNEKDCCCNN 78
YPKLPS++NEKDCCCNN
Sbjct: 61 YPKLPSVTNEKDCCCNN 75
BLAST of PI0002967 vs. NCBI nr
Match:
KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])
HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
MA+ K VSIV+L++ C VS+T + ++C+RPCSD YDD+SCY DCIR N GFC
Sbjct: 1 MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60
Query: 61 YPKLPSISNEKDCCCN 77
YPKLP S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74
BLAST of PI0002967 vs. NCBI nr
Match:
KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])
HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
MA+ K +SIVVL++F C S+T + + C+RPCSD YDD+SCY DCI+ N GFC
Sbjct: 1 MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
Query: 61 YPKLPSISNEKDCCCN 77
YPKLP S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74
BLAST of PI0002967 vs. NCBI nr
Match:
KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])
HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 31 MSCIRPCSDNYDDDSCYYDCIRNNKAVGFCYPKLPSISNEKDCCCN 77
M C++PCSD YDD+SCY DCI+ N GFCYPKLP S +KDCCC+
Sbjct: 21 MHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCCCS 64
BLAST of PI0002967 vs. NCBI nr
Match:
KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])
HSP 1 Score: 70.1 bits (170), Expect = 9.5e-09
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 1 MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
M + K IVS++V V F C +S++E D +C+ PCS+N D C CI ++ GFC
Sbjct: 1 MVTQKLFIVSMLVAVTF-SCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
Query: 61 YPKLPSISNEKDCCCNN 78
PKLP IS+ K CCCNN
Sbjct: 61 VPKLPGISDMKVCCCNN 76
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LJG5 | 3.0e-16 | 58.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1 | [more] |
A0A0A0LHG9 | 8.7e-16 | 56.58 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1 | [more] |
A0A0A0LKF5 | 7.6e-12 | 72.73 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1 | [more] |
A0A0A0L1R8 | 4.6e-09 | 46.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6586428.1 | 2.3e-18 | 59.74 | hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8651697.1 | 1.0e-15 | 57.89 | hypothetical protein Csa_006343 [Cucumis sativus] | [more] |
KGN61228.1 | 1.8e-15 | 56.58 | hypothetical protein Csa_006463 [Cucumis sativus] | [more] |
KAE8651701.1 | 1.3e-10 | 65.22 | hypothetical protein Csa_006400, partial [Cucumis sativus] | [more] |
KGN54497.1 | 9.5e-09 | 46.75 | hypothetical protein Csa_012842 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |