PI0002967.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0002967.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 10199400 .. 10199733 (+)
Sequence length	234
RNA-Seq Expression	PI0002967.1
Synteny	PI0002967.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTTCGAAGTTTCTTATCGTATCCATAGTTGTCTTGGTGATGTTCGTTTGTTGTGTTTCATCAACAAGTATGTGTTTTTATCTCATAATTAACTCTTTTGATTTCATTTCGCGTCTTGGAATGTTTTCCAAAACAATAATTTAACATTAATCTGTGATCTTATGCAGTTGAACGGGACATCTACATGAGTTGTATTCGACCATGTTCTGACAACTACGACGATGATTCATGTTATTATGATTGCATCCGAAATAATAAAGCCGTCGGATTTTGTTATCCCAAGCTACCTAGCATTTCTAATGAAAAAGATTGTTGTTGCAATAACTGA

mRNA sequence

ATGGCATCTTCGAAGTTTCTTATCGTATCCATAGTTGTCTTGGTGATGTTCGTTTGTTGTGTTTCATCAACAATTGAACGGGACATCTACATGAGTTGTATTCGACCATGTTCTGACAACTACGACGATGATTCATGTTATTATGATTGCATCCGAAATAATAAAGCCGTCGGATTTTGTTATCCCAAGCTACCTAGCATTTCTAATGAAAAAGATTGTTGTTGCAATAACTGA

Coding sequence (CDS)

ATGGCATCTTCGAAGTTTCTTATCGTATCCATAGTTGTCTTGGTGATGTTCGTTTGTTGTGTTTCATCAACAATTGAACGGGACATCTACATGAGTTGTATTCGACCATGTTCTGACAACTACGACGATGATTCATGTTATTATGATTGCATCCGAAATAATAAAGCCGTCGGATTTTGTTATCCCAAGCTACCTAGCATTTCTAATGAAAAAGATTGTTGTTGCAATAACTGA

Protein sequence

MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFCYPKLPSISNEKDCCCNN

Homology

[Close]

BLAST of PI0002967.1 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          MA+ K   +SIVVLV+F C VS+T    + + C+RPC D YDD+SCY DCIR N   GFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSISNEKDCCCNN 78
          YPKLP  S +KDCCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of PI0002967.1 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.7e-16
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          MA+ K   +SIVVL++F C  S+T    + + C+RPCSD YDD+SCY DCI+ N   GFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSISNEKDCCCN 77
          YPKLP  S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of PI0002967.1 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.6e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 33 CIRPCSDNYDDDSCYYDCIRNNKAVGFCYPKLPSISNEKDCCCN 77
          C+RPCSD YDD+SCY DCIR N   GFCYPKLP  S +KDCCCN
Sbjct: 12 CVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

[Close]

BLAST of PI0002967.1 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          M + K  IVS++V V F  C +S++E D   +C+ PCS+N  D  C   CI  ++  GFC
Sbjct: 1  MVTQKLFIVSMLVAVTF-SCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLPSISNEKDCCCNN 78
           PKLP IS+ K CCCNN
Sbjct: 61 VPKLPGISDMKVCCCNN 76

[Close]

BLAST of PI0002967.1 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          MAS K   V  +V++MF    +S+ + D++M CIRPC D +DDDSCY DC+R NK  GFC
Sbjct: 1  MASRKLFTVFAIVMMMFY--FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFC 60

Query: 61 YPKLPSISNEKDCCCNN 78
          YPKLPS++NEKDCCCNN
Sbjct: 61 YPKLPSVTNEKDCCCNN 75

[Close]

BLAST of PI0002967.1 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          MA+ K   VSIV+L++  C VS+T    + ++C+RPCSD YDD+SCY DCIR N   GFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSISNEKDCCCN 77
          YPKLP  S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of PI0002967.1 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          MA+ K   +SIVVL++F C  S+T    + + C+RPCSD YDD+SCY DCI+ N   GFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSISNEKDCCCN 77
          YPKLP  S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of PI0002967.1 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 31 MSCIRPCSDNYDDDSCYYDCIRNNKAVGFCYPKLPSISNEKDCCCN 77
          M C++PCSD YDD+SCY DCI+ N   GFCYPKLP  S +KDCCC+
Sbjct: 21 MHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCCCS 64

[Close]

BLAST of PI0002967.1 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.5e-09
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  MASSKFLIVSIVVLVMFVCCVSSTIERDIYMSCIRPCSDNYDDDSCYYDCIRNNKAVGFC 60
          M + K  IVS++V V F  C +S++E D   +C+ PCS+N  D  C   CI  ++  GFC
Sbjct: 1  MVTQKLFIVSMLVAVTF-SCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLPSISNEKDCCCNN 78
           PKLP IS+ K CCCNN
Sbjct: 61 VPKLPGISDMKVCCCNN 76

The following BLAST results are available for this feature:

BLAST of PI0002967.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002967.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJG5	3.0e-16	58.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
A0A0A0LHG9	8.7e-16	56.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
A0A0A0LKF5	7.6e-12	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]
A0A0A0L1R8	4.6e-09	46.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]

BLAST of PI0002967.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586428.1	2.3e-18	59.74	hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8651697.1	1.0e-15	57.89	hypothetical protein Csa_006343 [Cucumis sativus]	[more]
KGN61228.1	1.8e-15	56.58	hypothetical protein Csa_006463 [Cucumis sativus]	[more]
KAE8651701.1	1.3e-10	65.22	hypothetical protein Csa_006400, partial [Cucumis sativus]	[more]
KGN54497.1	9.5e-09	46.75	hypothetical protein Csa_012842 [Cucumis sativus]	[more]

BLAST of PI0002967.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0002967	PI0002967	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002967.1-exon	PI0002967.1-exon-chr04:10199400..10199472	exon
PI0002967.1-exon	PI0002967.1-exon-chr04:10199573..10199733	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002967.1-cds	PI0002967.1-cds-chr04:10199400..10199472	CDS
PI0002967.1-cds	PI0002967.1-cds-chr04:10199573..10199733	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0002967.1	PI0002967.1-protein	polypeptide