Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTACAACGAGTAAAGACTGTTTTAGATGGTAGATGGATTGAATCTTCCCGGTATATCAATTATCGTGTTGCTGATGTTTATGTTCCACTTTCATCTTCGTTTCAAGGATTTTTAGAATGTATTCAAAGTAGACTTTTTTCATCTTCAAATCTTTATGTTTCTCGTTTGACCGTTTATTGGGATGGTTACAACAATTCCAACCTCATTCAGATTGTTGAGGATAAGGATATGTCTTGGCTTATGTTAGTGTTGTCGAAGGTTCTTGATAATGATTTGCTTGTAGTTGTTGACTCTGTATCGGCTGGGGTTGCTGGAAGTACGACATTTTTTAACAGCGAAGTACCTAGCTGACGAAGCTCGCAAATGTGTATGTGTAAAGAATTGTAAAAGGCAAGGTCGCAAATGATTATCAAAAGTACTTGAAATTTAAAGTGGATGAAAGGAAGGGTTCTTACCTTGTTAAGCTTGGCAAAAGTTATTTGTAGATTACCCTTACTTACCGTAGTAGGCGGAAGTACGGGTGTCGGACCCAAGGGAGTGAGGAGAATTATATTTCTTGAATGAAAACTTGCAAGAATTGTGATTAGTAATAAAAGGTATAGAAAAGCATTGTTCGTTACTATTCTTTTGTTTGATTGAAAATACCATTTTGTTTCAATGATTAGAATTAAAGTGAATCACCCAATTTCCTATTCTTTTTAATTGAGAGAAACACTTGCTTTCATTTCTTGAATTTCTTGCTTCTTGCTTGCAACTTAATTGCTAATTCCATAAATATTGAAATTCTTTTCACTTTTTTCATATTCTTTTCTTTGTGACTATCAAACCCCCTTGTACTATTACTATTCTTTGGATTCTTGAAATTACTAACTTTTTCGATTTCTTGATTGAAGTGCTTAACAAGAATTTCCTTGGGACATGACCCCAACTTACGCTATACTATTCATATTTTGGTTATGAAAGTTGGGTAAATTTTCTTGAAGGGCTTTTAGGTAGCAATTCTTTGTACCGAATTCTTTTTGTATCATTTGTCTATTGCATAGATCTTTGTTATAATTGAATTGATTCCTTTTGTGCAATATCTGATAAGGTTGAAAATATGCTATCTTATCCTACTTAAATCGAGGCCGTTCTAGTGTTTTACGCCTCTATTCCGTGATTTTGTAGGCATTACGCTTAATTCAGGTCATTCTTGGCCTTAGCATTCATTTTGGAGCTAATTTGGGCTGTTATCGAGTCATACGACGTCAGCAAAGGAAAACCAAAAAGACTCGTAGCAATTGAAAATGCAAAAGAAGCCAAAAGGTCTTCTGCCTTACAGCGTCGTGATGCTCCACGGCGCCTCGCGCGGCGCTGCAAGGCTAGAGGTTTTAATTCGAGCAAAAAGCCAAGCATCGCGGCTCTACCCTTGGGTGTTGTGGTGCTCCGAAGTTTGACGAAACGTGAACGCACACGTGATGCTTGGGCGTCGCGACGCTGCCATGTTTTTGGGCTTAAATGCCCTAGTCGCCAACTTTTGAGGGATATCATTACACACTCAATTTTAGGCATTCTTTAG
mRNA sequence
ATGGATTTACAACGAGTAAAGACTGTTTTAGATGGTAGATGGATTGAATCTTCCCGGTATATCAATTATCGTGTTGCTGATGTTTATGTTCCACTTTCATCTTCGTTTCAAGGATTTTTAGAATGTATTCAAAGTAGACTTTTTTCATCTTCAAATCTTTATGTTTCTCGTTTGACCGTTTATTGGGATGGTTACAACAATTCCAACCTCATTCAGATTGTTGAGGATAAGGATATGTCTTGGCTTATGTTAGTGTTGTCGAAGGTTCTTGATAATGATTTGCTTGTAGTTGTTGACTCTGTATCGGCTGGGGTTGCTGGAACATTCATTTTGGAGCTAATTTGGGCTGTTATCGAGTCATACGACGTCAGCAAAGGAAAACCAAAAAGACTCGTAGCAATTGAAAATGCAAAAGAAGCCAAAAGGTCTTCTGCCTTACAGCGTCGTGATGCTCCACGGCGCCTCGCGCGGCGCTGCAAGGCTAGAGGTTTTAATTCGAGCAAAAAGCCAAGCATCGCGGCTCTACCCTTGGGTGTTGTGGTGCTCCGAAGTTTGACGAAACGTGAACGCACACGTGATGCTTGGGCGTCGCGACGCTGCCATGTTTTTGGGCTTAAATGCCCTAGTCGCCAACTTTTGAGGGATATCATTACACACTCAATTTTAGGCATTCTTTAG
Coding sequence (CDS)
ATGGATTTACAACGAGTAAAGACTGTTTTAGATGGTAGATGGATTGAATCTTCCCGGTATATCAATTATCGTGTTGCTGATGTTTATGTTCCACTTTCATCTTCGTTTCAAGGATTTTTAGAATGTATTCAAAGTAGACTTTTTTCATCTTCAAATCTTTATGTTTCTCGTTTGACCGTTTATTGGGATGGTTACAACAATTCCAACCTCATTCAGATTGTTGAGGATAAGGATATGTCTTGGCTTATGTTAGTGTTGTCGAAGGTTCTTGATAATGATTTGCTTGTAGTTGTTGACTCTGTATCGGCTGGGGTTGCTGGAACATTCATTTTGGAGCTAATTTGGGCTGTTATCGAGTCATACGACGTCAGCAAAGGAAAACCAAAAAGACTCGTAGCAATTGAAAATGCAAAAGAAGCCAAAAGGTCTTCTGCCTTACAGCGTCGTGATGCTCCACGGCGCCTCGCGCGGCGCTGCAAGGCTAGAGGTTTTAATTCGAGCAAAAAGCCAAGCATCGCGGCTCTACCCTTGGGTGTTGTGGTGCTCCGAAGTTTGACGAAACGTGAACGCACACGTGATGCTTGGGCGTCGCGACGCTGCCATGTTTTTGGGCTTAAATGCCCTAGTCGCCAACTTTTGAGGGATATCATTACACACTCAATTTTAGGCATTCTTTAG
Protein sequence
MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTVYWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAGTFILELIWAVIESYDVSKGKPKRLVAIENAKEAKRSSALQRRDAPRRLARRCKARGFNSSKKPSIAALPLGVVVLRSLTKRERTRDAWASRRCHVFGLKCPSRQLLRDIITHSILGIL
Homology
BLAST of PI0000515 vs. ExPASy TrEMBL
Match:
A0A5D3DDR3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00820 PE=4 SV=1)
HSP 1 Score: 150.6 bits (379), Expect = 7.8e-33
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTVLDGRWIESSRYI+YRV VYVP+SSSFQ + CIQ R+F +S L VS LTV
Sbjct: 1 MTLQRVKTVLDGRWIESSRYIDYRVLAVYVPVSSSFQKLVNCIQGRIFPTSELSVSWLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAG 108
YW+G NNSNLI+IV+DK +SWLMLV+SK DNDLLVVVD VSA G
Sbjct: 61 YWNGCNNSNLIRIVDDKYVSWLMLVMSKFSDNDLLVVVDYVSASNIG 107
BLAST of PI0000515 vs. ExPASy TrEMBL
Match:
A0A5D3DAG3 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001590 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTV DGRWIESSRYI+Y + DVYVP+SSSFQ F+ CIQ RLF + + VSRLTV
Sbjct: 1 MALQRVKTVFDGRWIESSRYIDYHLLDVYVPVSSSFQEFVNCIQRRLFPNLEVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAGT 109
YW NNSNLIQIV DKD SW+MLV+SK DNDLL+VVD+V A G+
Sbjct: 61 YWKDCNNSNLIQIVNDKDESWIMLVISKFSDNDLLIVVDTVPATDIGS 108
BLAST of PI0000515 vs. ExPASy TrEMBL
Match:
A0A5D3CUZ6 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00480 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F CIQ RLF +S + VSRLTV
Sbjct: 1 MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
YW NNSNLI+IV+DKD+SW+MLV+SK DNDLLVVV++V A
Sbjct: 61 YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103
BLAST of PI0000515 vs. ExPASy TrEMBL
Match:
A0A5A7TVA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00490 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F CIQ RLF +S + VSRLTV
Sbjct: 1 MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
YW NNSNLI+IV+DKD+SW+MLV+SK DNDLLVVV++V A
Sbjct: 61 YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103
BLAST of PI0000515 vs. ExPASy TrEMBL
Match:
A0A5A7TFW2 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001100 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTVLDGRWIES RYI+Y + DVYV +SSSFQ F CIQ RLF +S++ VSRLTV
Sbjct: 1 MALQRVKTVLDGRWIESCRYIDYCLLDVYVLVSSSFQEFENCIQHRLFPNSDVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
YW G NN LIQIV+DKD+SW+MLVLSK +NDLL+VVD+ A
Sbjct: 61 YWKGCNNLKLIQIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPA 103
BLAST of PI0000515 vs. NCBI nr
Match:
KAA0033326.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transposase [Cucumis melo var. makuwa])
HSP 1 Score: 150.6 bits (379), Expect = 1.6e-32
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTVLDGRWIESSRYI+YRV VYVP+SSSFQ + CIQ R+F +S L VS LTV
Sbjct: 1 MTLQRVKTVLDGRWIESSRYIDYRVLAVYVPVSSSFQKLVNCIQGRIFPTSELSVSWLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAG 108
YW+G NNSNLI+IV+DK +SWLMLV+SK DNDLLVVVD VSA G
Sbjct: 61 YWNGCNNSNLIRIVDDKYVSWLMLVMSKFSDNDLLVVVDYVSASNIG 107
BLAST of PI0000515 vs. NCBI nr
Match:
KAA0038035.1 (uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa] >TYK20567.1 uncharacterized protein E5676_scaffold237G001590 [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 6.1e-32
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTV DGRWIESSRYI+Y + DVYVP+SSSFQ F+ CIQ RLF + + VSRLTV
Sbjct: 1 MALQRVKTVFDGRWIESSRYIDYHLLDVYVPVSSSFQEFVNCIQRRLFPNLEVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAGT 109
YW NNSNLIQIV DKD SW+MLV+SK DNDLL+VVD+V A G+
Sbjct: 61 YWKDCNNSNLIQIVNDKDESWIMLVISKFSDNDLLIVVDTVPATDIGS 108
BLAST of PI0000515 vs. NCBI nr
Match:
KAA0047392.1 (uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 6.1e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F CIQ RLF +S + VSRLTV
Sbjct: 1 MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
YW NNSNLI+IV+DKD+SW+MLV+SK DNDLLVVV++V A
Sbjct: 61 YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103
BLAST of PI0000515 vs. NCBI nr
Match:
TYK14069.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 6.1e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F CIQ RLF +S + VSRLTV
Sbjct: 1 MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
YW NNSNLI+IV+DKD+SW+MLV+SK DNDLLVVV++V A
Sbjct: 61 YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103
BLAST of PI0000515 vs. NCBI nr
Match:
KAA0042312.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0
Query: 1 MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
M LQRVKTVLDGRWIES RYI+Y + DVYV +SSSFQ F CIQ RLF +S++ VSRLTV
Sbjct: 1 MALQRVKTVLDGRWIESCRYIDYCLLDVYVLVSSSFQEFENCIQHRLFPNSDVSVSRLTV 60
Query: 61 YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
YW G NN LIQIV+DKD+SW+MLVLSK +NDLL+VVD+ A
Sbjct: 61 YWKGCNNLKLIQIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPA 103
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DDR3 | 7.8e-33 | 72.90 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... | [more] |
| A0A5D3DAG3 | 3.0e-32 | 69.44 | ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3CUZ6 | 3.0e-32 | 71.84 | Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
| A0A5A7TVA6 | 3.0e-32 | 71.84 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TFW2 | 6.2e-30 | 69.90 | Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0033326.1 | 1.6e-32 | 72.90 | MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transpo... | [more] |
| KAA0038035.1 | 6.1e-32 | 69.44 | uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa] >TYK2... | [more] |
| KAA0047392.1 | 6.1e-32 | 71.84 | uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa] | [more] |
| TYK14069.1 | 6.1e-32 | 71.84 | protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] | [more] |
| KAA0042312.1 | 1.3e-29 | 69.90 | protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
