PI0000515.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0000515.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr06: 22412343 .. 22413906 (+)
Sequence length	678
RNA-Seq Expression	PI0000515.1
Synteny	PI0000515.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTACAACGAGTAAAGACTGTTTTAGATGGTAGATGGATTGAATCTTCCCGGTATATCAATTATCGTGTTGCTGATGTTTATGTTCCACTTTCATCTTCGTTTCAAGGATTTTTAGAATGTATTCAAAGTAGACTTTTTTCATCTTCAAATCTTTATGTTTCTCGTTTGACCGTTTATTGGGATGGTTACAACAATTCCAACCTCATTCAGATTGTTGAGGATAAGGATATGTCTTGGCTTATGTTAGTGTTGTCGAAGGTTCTTGATAATGATTTGCTTGTAGTTGTTGACTCTGTATCGGCTGGGGTTGCTGGAAGTACGACATTTTTTAACAGCGAAGTACCTAGCTGACGAAGCTCGCAAATGTGTATGTGTAAAGAATTGTAAAAGGCAAGGTCGCAAATGATTATCAAAAGTACTTGAAATTTAAAGTGGATGAAAGGAAGGGTTCTTACCTTGTTAAGCTTGGCAAAAGTTATTTGTAGATTACCCTTACTTACCGTAGTAGGCGGAAGTACGGGTGTCGGACCCAAGGGAGTGAGGAGAATTATATTTCTTGAATGAAAACTTGCAAGAATTGTGATTAGTAATAAAAGGTATAGAAAAGCATTGTTCGTTACTATTCTTTTGTTTGATTGAAAATACCATTTTGTTTCAATGATTAGAATTAAAGTGAATCACCCAATTTCCTATTCTTTTTAATTGAGAGAAACACTTGCTTTCATTTCTTGAATTTCTTGCTTCTTGCTTGCAACTTAATTGCTAATTCCATAAATATTGAAATTCTTTTCACTTTTTTCATATTCTTTTCTTTGTGACTATCAAACCCCCTTGTACTATTACTATTCTTTGGATTCTTGAAATTACTAACTTTTTCGATTTCTTGATTGAAGTGCTTAACAAGAATTTCCTTGGGACATGACCCCAACTTACGCTATACTATTCATATTTTGGTTATGAAAGTTGGGTAAATTTTCTTGAAGGGCTTTTAGGTAGCAATTCTTTGTACCGAATTCTTTTTGTATCATTTGTCTATTGCATAGATCTTTGTTATAATTGAATTGATTCCTTTTGTGCAATATCTGATAAGGTTGAAAATATGCTATCTTATCCTACTTAAATCGAGGCCGTTCTAGTGTTTTACGCCTCTATTCCGTGATTTTGTAGGCATTACGCTTAATTCAGGTCATTCTTGGCCTTAGCATTCATTTTGGAGCTAATTTGGGCTGTTATCGAGTCATACGACGTCAGCAAAGGAAAACCAAAAAGACTCGTAGCAATTGAAAATGCAAAAGAAGCCAAAAGGTCTTCTGCCTTACAGCGTCGTGATGCTCCACGGCGCCTCGCGCGGCGCTGCAAGGCTAGAGGTTTTAATTCGAGCAAAAAGCCAAGCATCGCGGCTCTACCCTTGGGTGTTGTGGTGCTCCGAAGTTTGACGAAACGTGAACGCACACGTGATGCTTGGGCGTCGCGACGCTGCCATGTTTTTGGGCTTAAATGCCCTAGTCGCCAACTTTTGAGGGATATCATTACACACTCAATTTTAGGCATTCTTTAG

mRNA sequence

ATGGATTTACAACGAGTAAAGACTGTTTTAGATGGTAGATGGATTGAATCTTCCCGGTATATCAATTATCGTGTTGCTGATGTTTATGTTCCACTTTCATCTTCGTTTCAAGGATTTTTAGAATGTATTCAAAGTAGACTTTTTTCATCTTCAAATCTTTATGTTTCTCGTTTGACCGTTTATTGGGATGGTTACAACAATTCCAACCTCATTCAGATTGTTGAGGATAAGGATATGTCTTGGCTTATGTTAGTGTTGTCGAAGGTTCTTGATAATGATTTGCTTGTAGTTGTTGACTCTGTATCGGCTGGGGTTGCTGGAACATTCATTTTGGAGCTAATTTGGGCTGTTATCGAGTCATACGACGTCAGCAAAGGAAAACCAAAAAGACTCGTAGCAATTGAAAATGCAAAAGAAGCCAAAAGGTCTTCTGCCTTACAGCGTCGTGATGCTCCACGGCGCCTCGCGCGGCGCTGCAAGGCTAGAGGTTTTAATTCGAGCAAAAAGCCAAGCATCGCGGCTCTACCCTTGGGTGTTGTGGTGCTCCGAAGTTTGACGAAACGTGAACGCACACGTGATGCTTGGGCGTCGCGACGCTGCCATGTTTTTGGGCTTAAATGCCCTAGTCGCCAACTTTTGAGGGATATCATTACACACTCAATTTTAGGCATTCTTTAG

Coding sequence (CDS)

ATGGATTTACAACGAGTAAAGACTGTTTTAGATGGTAGATGGATTGAATCTTCCCGGTATATCAATTATCGTGTTGCTGATGTTTATGTTCCACTTTCATCTTCGTTTCAAGGATTTTTAGAATGTATTCAAAGTAGACTTTTTTCATCTTCAAATCTTTATGTTTCTCGTTTGACCGTTTATTGGGATGGTTACAACAATTCCAACCTCATTCAGATTGTTGAGGATAAGGATATGTCTTGGCTTATGTTAGTGTTGTCGAAGGTTCTTGATAATGATTTGCTTGTAGTTGTTGACTCTGTATCGGCTGGGGTTGCTGGAACATTCATTTTGGAGCTAATTTGGGCTGTTATCGAGTCATACGACGTCAGCAAAGGAAAACCAAAAAGACTCGTAGCAATTGAAAATGCAAAAGAAGCCAAAAGGTCTTCTGCCTTACAGCGTCGTGATGCTCCACGGCGCCTCGCGCGGCGCTGCAAGGCTAGAGGTTTTAATTCGAGCAAAAAGCCAAGCATCGCGGCTCTACCCTTGGGTGTTGTGGTGCTCCGAAGTTTGACGAAACGTGAACGCACACGTGATGCTTGGGCGTCGCGACGCTGCCATGTTTTTGGGCTTAAATGCCCTAGTCGCCAACTTTTGAGGGATATCATTACACACTCAATTTTAGGCATTCTTTAG

Protein sequence

MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTVYWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAGTFILELIWAVIESYDVSKGKPKRLVAIENAKEAKRSSALQRRDAPRRLARRCKARGFNSSKKPSIAALPLGVVVLRSLTKRERTRDAWASRRCHVFGLKCPSRQLLRDIITHSILGIL

Homology

[Close]

BLAST of PI0000515.1 vs. ExPASy TrEMBL
Match: A0A5D3DDR3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00820 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-33
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTVLDGRWIESSRYI+YRV  VYVP+SSSFQ  + CIQ R+F +S L VS LTV
Sbjct: 1   MTLQRVKTVLDGRWIESSRYIDYRVLAVYVPVSSSFQKLVNCIQGRIFPTSELSVSWLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAG 108
           YW+G NNSNLI+IV+DK +SWLMLV+SK  DNDLLVVVD VSA   G
Sbjct: 61  YWNGCNNSNLIRIVDDKYVSWLMLVMSKFSDNDLLVVVDYVSASNIG 107

[Close]

BLAST of PI0000515.1 vs. ExPASy TrEMBL
Match: A0A5D3DAG3 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001590 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTV DGRWIESSRYI+Y + DVYVP+SSSFQ F+ CIQ RLF +  + VSRLTV
Sbjct: 1   MALQRVKTVFDGRWIESSRYIDYHLLDVYVPVSSSFQEFVNCIQRRLFPNLEVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAGT 109
           YW   NNSNLIQIV DKD SW+MLV+SK  DNDLL+VVD+V A   G+
Sbjct: 61  YWKDCNNSNLIQIVNDKDESWIMLVISKFSDNDLLIVVDTVPATDIGS 108

[Close]

BLAST of PI0000515.1 vs. ExPASy TrEMBL
Match: A0A5D3CUZ6 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00480 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F  CIQ RLF +S + VSRLTV
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
           YW   NNSNLI+IV+DKD+SW+MLV+SK  DNDLLVVV++V A
Sbjct: 61  YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103

[Close]

BLAST of PI0000515.1 vs. ExPASy TrEMBL
Match: A0A5A7TVA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00490 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F  CIQ RLF +S + VSRLTV
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
           YW   NNSNLI+IV+DKD+SW+MLV+SK  DNDLLVVV++V A
Sbjct: 61  YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103

[Close]

BLAST of PI0000515.1 vs. ExPASy TrEMBL
Match: A0A5A7TFW2 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001100 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTVLDGRWIES RYI+Y + DVYV +SSSFQ F  CIQ RLF +S++ VSRLTV
Sbjct: 1   MALQRVKTVLDGRWIESCRYIDYCLLDVYVLVSSSFQEFENCIQHRLFPNSDVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
           YW G NN  LIQIV+DKD+SW+MLVLSK  +NDLL+VVD+  A
Sbjct: 61  YWKGCNNLKLIQIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPA 103

[Close]

BLAST of PI0000515.1 vs. NCBI nr
Match: KAA0033326.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-32
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTVLDGRWIESSRYI+YRV  VYVP+SSSFQ  + CIQ R+F +S L VS LTV
Sbjct: 1   MTLQRVKTVLDGRWIESSRYIDYRVLAVYVPVSSSFQKLVNCIQGRIFPTSELSVSWLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAG 108
           YW+G NNSNLI+IV+DK +SWLMLV+SK  DNDLLVVVD VSA   G
Sbjct: 61  YWNGCNNSNLIRIVDDKYVSWLMLVMSKFSDNDLLVVVDYVSASNIG 107

[Close]

BLAST of PI0000515.1 vs. NCBI nr
Match: KAA0038035.1 (uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa] >TYK20567.1 uncharacterized protein E5676_scaffold237G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 6.1e-32
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTV DGRWIESSRYI+Y + DVYVP+SSSFQ F+ CIQ RLF +  + VSRLTV
Sbjct: 1   MALQRVKTVFDGRWIESSRYIDYHLLDVYVPVSSSFQEFVNCIQRRLFPNLEVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSAGVAGT 109
           YW   NNSNLIQIV DKD SW+MLV+SK  DNDLL+VVD+V A   G+
Sbjct: 61  YWKDCNNSNLIQIVNDKDESWIMLVISKFSDNDLLIVVDTVPATDIGS 108

[Close]

BLAST of PI0000515.1 vs. NCBI nr
Match: KAA0047392.1 (uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 6.1e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F  CIQ RLF +S + VSRLTV
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
           YW   NNSNLI+IV+DKD+SW+MLV+SK  DNDLLVVV++V A
Sbjct: 61  YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103

[Close]

BLAST of PI0000515.1 vs. NCBI nr
Match: TYK14069.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 6.1e-32
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTV DGRWIES RYI+YR+ DVYVP+SSSFQ F  CIQ RLF +S + VSRLTV
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
           YW   NNSNLI+IV+DKD+SW+MLV+SK  DNDLLVVV++V A
Sbjct: 61  YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPA 103

[Close]

BLAST of PI0000515.1 vs. NCBI nr
Match: KAA0042312.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MDLQRVKTVLDGRWIESSRYINYRVADVYVPLSSSFQGFLECIQSRLFSSSNLYVSRLTV 60
           M LQRVKTVLDGRWIES RYI+Y + DVYV +SSSFQ F  CIQ RLF +S++ VSRLTV
Sbjct: 1   MALQRVKTVLDGRWIESCRYIDYCLLDVYVLVSSSFQEFENCIQHRLFPNSDVSVSRLTV 60

Query: 61  YWDGYNNSNLIQIVEDKDMSWLMLVLSKVLDNDLLVVVDSVSA 104
           YW G NN  LIQIV+DKD+SW+MLVLSK  +NDLL+VVD+  A
Sbjct: 61  YWKGCNNLKLIQIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPA 103

The following BLAST results are available for this feature:

BLAST of PI0000515.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000515.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDR3	7.8e-33	72.90	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5D3DAG3	3.0e-32	69.44	ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CUZ6	3.0e-32	71.84	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7TVA6	3.0e-32	71.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TFW2	6.2e-30	69.90	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of PI0000515.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033326.1	1.6e-32	72.90	MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transpo...	[more]
KAA0038035.1	6.1e-32	69.44	uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0047392.1	6.1e-32	71.84	uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa]	[more]
TYK14069.1	6.1e-32	71.84	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]	[more]
KAA0042312.1	1.3e-29	69.90	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0000515.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0000515	PI0000515	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000515.1-exon	PI0000515.1-exon-chr06:22412343..22412664	exon
PI0000515.1-exon	PI0000515.1-exon-chr06:22413551..22413906	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000515.1-cds	PI0000515.1-cds-chr06:22412343..22412664	CDS
PI0000515.1-cds	PI0000515.1-cds-chr06:22413551..22413906	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0000515.1	PI0000515.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0032196	transposition
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding