Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTACTTCTCCTGAGGAAGCTTTCCAGATACAAACCTCCTTCAAAGGCGATTCTCGTAGAAGACGTGGTAGTCGTGGTAGACGAGGAGGTGGAAGAAACTATGACAATAGAAATGGTGCGAGTTTTGAAAACAAGTAAGAAAACTTTTCCTCATCTCGAGGAAAATGAGATGGAAGAGGAAGATGTTTTGGTAGAAACCAACGAAATGGTCATGGCAATTTCTCTTACATTCAATATTTTAATTGCAAAAAGTATGGTCACTTTCAAGCAAATTGTTGGGCTCCGAGAAATGGAGATTAAATAATAATTCCACCTTAAGGAGGAAAAAATGATGAAGGAGTTCTATTTCTTGCATGTAGTGCTCAAGAAAATGTTGAAGAGCCTACATGGTATGATGGATATTTCTAAAGTGAAGTGAAAACTTGTAATGATACCAGATTACAAGTCAAAGGTCAAGGTGATATTCTCGTTAAGTCGGAAGAAAGGCACCAAACGAATTGTGGCTTCTATGTTCCGAGTCGGAAGCATAATCTTCTGAGTGTTGGTCAATTGCTTTAACGAGGACTCAAAGTTTCATTTGAAGATGGTGTTTGTGCAATCAAAGATCAAAGTGATGTTCTTATTGCTAAGGTGAAAATGACGAGTAATAAAATGTTTCCTATGAAGTTTACACATGGTCAAATTGCTTGCTTTATTATCATAGTAAAAGATCCATCTTGGCTTTCGCATTTTCGATAAGGTCACTCGAATTTTGGATCATTATCATATATGTGCAAAAATCATATGGTGAGAGGTCTTCAAAATATCAACCATGAGACAGATATTTGTGAGGTATGTATTCTTGCAAAACACCATCGGGAATCGTCTCCAATTGGTAAAGCTTGGAGAGCCTCCAAACCTATTGAACTTATTCATACTAATTTGTGTGGTCACATGGGCACAATATCTAACAGAGGTAATCATTATTTCATAACCTTCATTGATGATTTTAGTAGTAAATTGTAGATTTATTTTGTGAAAGAGAAAAGTGAAGCATTTCAATGTTTTAAAGCTTTTAAAGCTTTTGTTGAGAATCAAAGTGGCCATAAAATAAAAACGTTGAGATCTAACCACGGTGGAGAGTATATAGCTTTTTTTTATTATTATTTTTTCAAGGAGTATGGTATTCATCATCAAAAGACTGTTCGGATGACTCCACAATAGAATGAAGTTGCAGAAAGAAAGAACAGAACAATCATGGAAATGACTAGAAGTCTATTGAAAGCCAAAAAGATGCCAAATGAGTTTTGGGGAGATGTTATTGCATGTACTACCTACATCTTGAATCGAGCTCCAATGAAGAGTGTTCCAAGTATGACTCCTTATGAAGCATGGTATGGTGAGAAACCATGTGTTAGACACTTGAGAGTTTTTACGAGTATAGCTTATTCTCATGTTCCAGATAAGCTAAGATAAAATTAATCTAGACATTTTGCAAATACATGTATTAGCAATTAATTACATACATGAATTACTAGATACATTGATGAATGTTCACGTATTAGTGAAGGGTCACATTTCTTAATATTTACTATTAGTGTCTTTTGGTGTATTTCCTACTAGTATAAATATGTGTAGGATTTGTCATTTGTAATCAACTCAAGGAAAACAAAGTCTCTTACAAAATACAAGTTCTTGTTTGTTCAATTTAGTGTGAGTAATAGAACAATCTTCTTCTCTTGTCTGTTGATTTGTGTTGTGAGGACCTACTTCATTTTCAACAATATCTACTCAGCAGGCCGCACCACTAAATGGGAAGTCGTGGGACCATAACCAAGATCACTTATAGGCCAAATTCGCATCAATCTTCTAGAATAAAGGGAGCGACGAGACCTGCAAAATAGAATAACACTAAAGACCGGTGTGGCTCTCGTCACACAGGCTTCGATGCTTAAGTCAGAATTGGAGTAGTTGAATAGGAAGAAGTGCTTTTGCATAGTAAAGAGTAGAGATTTGTAGCATACCTCAACTATGAGTATTTTCCTTCTATTTAAAGAGGGAAACACCAAGTATCACTAGGATATCTTATTTGAATTTAGGGACAATCTTAAGGACTTCAAGATATCTTCCTTTTTGAATTCCTAAAGGGAATTTGAATCGTAGAAAATAGTGATTTTCTCATCCATAACAATAACCCCCACTCTCAAAGTTGAAGATAACGAGTTATTCAAAATGTCAAACTTTTGCTTTGAAAGTATTTTGTCGTTCATGGGCTGACCATTTTTATAGAACAACCCCACACCCTTTTGTCATAGTCAGTTGTCGTTTCACGGGCTGGCCTTCTTAGCCCCCATACATTTTTGTCGTAGTTGGCTGTAATCATGTCTTTTGCACTCTACTATACGGTTAGTTTTAACCGTTAGATTTTGGCCTTGGGATCTAAAGTAGGACTGGTACCTTCTTTGGGTTTTTAACCTATTTGACTTTTGCCCATGATTTTATACCCCAAAATTTACTCTTGGATTTCTAACCTATTTGGCTTTCGCCAATGGTTTTATACTCTGAATTTAGTTGGCACCCTTGGGTTTCTAACCTATTTGGCTTTTACCGGTTTTTTACCCTGAGTTTAATCAATACCTCTAGGTTTCTAACCTATTTTGGCTTTTGCCAAATGGTTTTATACCCTGGGTTTTGTTGATTGGTTTGGCATGCCTTTCAGCACCTTTGGGATTCTCTTCCCCGATTTCACTGACTGACTTTTAGCTTATCGACCTGCTTATAGGTTTGTCCCAATTAGAGTTCTTTGACCAGTTCTTGATTAACTTACCCAAGATCTGTTCTAAACTTATCGATTCGATTTTCCCTCGGCTACCTCAGGTAGGGGCAACCCCCGAGTCGTATGGCATTCGTCATTAGAGAGTTGTGGTCTGCCTCCAGAATCCATGTCGACTTGTTTCTCCCGAGATTTCCTCGGATCCAAGCAGTCGGTCAATTGGTTGTAAATCGTTTTACTTTTAAATCTTAGTCGTCCCCACAGACGGCTCCAATTGTTGATGCAGAAATTTGGTCTCTTCAGATGTTGTTAAATTCACATCAATCTTCTAGAATAAAGGGAGCGACGAGACCTGTAAAATAGAACAGCACTAAAGACTGGTGTTAGGAAGAACCGCTTATGCATAGCAAAGAGTAGAGATTTGTAGCATATCTCAACTATGAGTATTTTCCTTCTATTTATAGAGGGAAAAACCTAGTATCACTAGCATATCTTATTTGAATCTAGGGAGAATCTCGAGATCATCAAGATATCTTCTCCTTTTGATTATAGGATATCTTCTTCTGAATGTTAAGGCACCAGGATATCTTCCCTTTTGAATTCGTAAAGGGAATTTGAATTGTAGAAAATAGTGATTTTCTCATCCATAACACTTAGGTTTGTCACATTAGTGCTGGGACGTCTGCTCGTCGTTGAGCATGGCGCTTGGCGTGGATTTCGACTGTTTCTTTTATCTAGAGGGAGTGTAATACTAGAGTTCATGTGTGTGCGGTGGGTCGGTCGCCTTCTGTCCTCCTACGCGCCTTGAAAGCTAAGGTCTATTATCGTTGTACTACCTGGCTTGGGAGCTGTTTGAGTTCTGATCCTATGTTTATCTCGGCCTAG
mRNA sequence
ATGATGTTACTTCTCCTGAGGAAGCTTTCCAGATACAAACCTCCTTCAAAGGCGATTCTCGTAGAAGACGTGGTAGTCGTGGTAGACGAGGAGGTGGAAGAAACTATGACAATAGAAATGGTGCGAGTTTTGAAAACAAGTAAGAAAACTTTTCCTCATCTCGAGGAAAATGAGATGGAAGAGGAAGATGTTTTGGTAGAAACCAACGAAATGGTCATGGCAATTTCTCTTACATTCAATATTTTAATTGCAAAAAGTTTGTCCCAATTAGAGTTCTTTGACCAGTTCTTGATTAACTTACCCAAGATCTGTTCTAAACTTATCGATTCGATTTTCCCTCGGCTACCTCAGAGGGAGTGTAATACTAGAGTTCATGTGTGTGCGGTGGGTCGGTCGCCTTCTGTCCTCCTACGCGCCTTGAAAGCTAAGGTCTATTATCGTTGTACTACCTGGCTTGGGAGCTGTTTGAGTTCTGATCCTATGTTTATCTCGGCCTAG
Coding sequence (CDS)
ATGATGTTACTTCTCCTGAGGAAGCTTTCCAGATACAAACCTCCTTCAAAGGCGATTCTCGTAGAAGACGTGGTAGTCGTGGTAGACGAGGAGGTGGAAGAAACTATGACAATAGAAATGGTGCGAGTTTTGAAAACAAGTAAGAAAACTTTTCCTCATCTCGAGGAAAATGAGATGGAAGAGGAAGATGTTTTGGTAGAAACCAACGAAATGGTCATGGCAATTTCTCTTACATTCAATATTTTAATTGCAAAAAGTTTGTCCCAATTAGAGTTCTTTGACCAGTTCTTGATTAACTTACCCAAGATCTGTTCTAAACTTATCGATTCGATTTTCCCTCGGCTACCTCAGAGGGAGTGTAATACTAGAGTTCATGTGTGTGCGGTGGGTCGGTCGCCTTCTGTCCTCCTACGCGCCTTGAAAGCTAAGGTCTATTATCGTTGTACTACCTGGCTTGGGAGCTGTTTGAGTTCTGATCCTATGTTTATCTCGGCCTAG
Protein sequence
MMLLLLRKLSRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFNILIAKSLSQLEFFDQFLINLPKICSKLIDSIFPRLPQRECNTRVHVCAVGRSPSVLLRALKAKVYYRCTTWLGSCLSSDPMFISA
Homology
BLAST of Moc09g28440 vs. NCBI nr
Match:
KAA0058989.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 73.6 bits (179), Expect = 1.8e-09
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 10 SRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETN 69
S Y+ K + VEDVV++ DE VEETM IE+V++LK K +LEE E EEE+ L ET
Sbjct: 102 STYQGEDKVVHVEDVVILKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETK 161
Query: 70 EMVMAISLTFNILIAK 86
E+V+ ISLT N+LIA+
Sbjct: 162 EVVVVISLTLNVLIAE 177
BLAST of Moc09g28440 vs. NCBI nr
Match:
KAA0037654.1 (integrase [Cucumis melo var. makuwa] >TYK22799.1 integrase [Cucumis melo var. makuwa])
HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0
Query: 7 RKLSRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLV 66
+ LS S I VEDVVV+ DEEVEETM IE++++LK KK +LEE E E+++ L
Sbjct: 137 KDLSTLSINSLVIHVEDVVVMEDEEVEETMIIELMQILKIHKKALLYLEEEEAEKKEALA 196
Query: 67 ETNEMVMAISLTFNILIAK 86
ET E+V+ ISLTFN LIA+
Sbjct: 197 ETKEVVVVISLTFNALIAE 215
BLAST of Moc09g28440 vs. NCBI nr
Match:
KAA0033891.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
+EDVVV+ DEEVEETM IE V++LK KK +LEE E +EE+ L ET E+V ISL FN
Sbjct: 1 MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALTETKEVVGVISLKFN 60
Query: 81 ILIAKSL 88
LIA+SL
Sbjct: 61 ALIAESL 67
BLAST of Moc09g28440 vs. NCBI nr
Match:
TYK01275.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
+EDVVV+ DEEVEETM IE V++LK KK +LEE E +EE+ L ET E+V ISL FN
Sbjct: 1 MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALAETKEVVGVISLKFN 60
Query: 81 ILIAKSL 88
LIA+SL
Sbjct: 61 ALIAESL 67
BLAST of Moc09g28440 vs. NCBI nr
Match:
TYK19542.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 68.6 bits (166), Expect = 5.9e-08
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0
Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
VEDVVV+ DE VEETM IE+V++LK K +LEE E EEE+ L ET E+V+ ISLT N
Sbjct: 118 VEDVVVLKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVISLTLN 177
Query: 81 ILIAK 86
+LIA+
Sbjct: 178 VLIAE 182
BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match:
A0A5A7UZN5 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00030 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 8.9e-10
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 10 SRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETN 69
S Y+ K + VEDVV++ DE VEETM IE+V++LK K +LEE E EEE+ L ET
Sbjct: 102 STYQGEDKVVHVEDVVILKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETK 161
Query: 70 EMVMAISLTFNILIAK 86
E+V+ ISLT N+LIA+
Sbjct: 162 EVVVVISLTLNVLIAE 177
BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match:
A0A5D3DHS9 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00370 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0
Query: 7 RKLSRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLV 66
+ LS S I VEDVVV+ DEEVEETM IE++++LK KK +LEE E E+++ L
Sbjct: 137 KDLSTLSINSLVIHVEDVVVMEDEEVEETMIIELMQILKIHKKALLYLEEEEAEKKEALA 196
Query: 67 ETNEMVMAISLTFNILIAK 86
ET E+V+ ISLTFN LIA+
Sbjct: 197 ETKEVVVVISLTFNALIAE 215
BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match:
A0A5D3BQ20 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00620 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
+EDVVV+ DEEVEETM IE V++LK KK +LEE E +EE+ L ET E+V ISL FN
Sbjct: 1 MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALAETKEVVGVISLKFN 60
Query: 81 ILIAKSL 88
LIA+SL
Sbjct: 61 ALIAESL 67
BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match:
A0A5A7SWQ3 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00760 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
+EDVVV+ DEEVEETM IE V++LK KK +LEE E +EE+ L ET E+V ISL FN
Sbjct: 1 MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALTETKEVVGVISLKFN 60
Query: 81 ILIAKSL 88
LIA+SL
Sbjct: 61 ALIAESL 67
BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match:
A0A5D3D7N1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00370 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0
Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
VEDVVV+ DE VEETM IE+V++LK K +LEE E EEE+ L ET E+V+ ISLT N
Sbjct: 118 VEDVVVLKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVISLTLN 177
Query: 81 ILIAK 86
+LIA+
Sbjct: 178 VLIAE 182
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UZN5 | 8.9e-10 | 53.95 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00030 PE=4... | [more] |
| A0A5D3DHS9 | 2.6e-09 | 54.43 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00370 PE=4... | [more] |
| A0A5D3BQ20 | 1.7e-08 | 61.19 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00620 PE=4 ... | [more] |
| A0A5A7SWQ3 | 1.7e-08 | 61.19 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00760 PE... | [more] |
| A0A5D3D7N1 | 2.9e-08 | 60.00 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00370 PE=4... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
