Moc09g28440 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g28440
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Integrase
Location	chr9: 21359151 .. 21362792 (-)
RNA-Seq Expression	Moc09g28440
Synteny	Moc09g28440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTACTTCTCCTGAGGAAGCTTTCCAGATACAAACCTCCTTCAAAGGCGATTCTCGTAGAAGACGTGGTAGTCGTGGTAGACGAGGAGGTGGAAGAAACTATGACAATAGAAATGGTGCGAGTTTTGAAAACAAGTAAGAAAACTTTTCCTCATCTCGAGGAAAATGAGATGGAAGAGGAAGATGTTTTGGTAGAAACCAACGAAATGGTCATGGCAATTTCTCTTACATTCAATATTTTAATTGCAAAAAGTATGGTCACTTTCAAGCAAATTGTTGGGCTCCGAGAAATGGAGATTAAATAATAATTCCACCTTAAGGAGGAAAAAATGATGAAGGAGTTCTATTTCTTGCATGTAGTGCTCAAGAAAATGTTGAAGAGCCTACATGGTATGATGGATATTTCTAAAGTGAAGTGAAAACTTGTAATGATACCAGATTACAAGTCAAAGGTCAAGGTGATATTCTCGTTAAGTCGGAAGAAAGGCACCAAACGAATTGTGGCTTCTATGTTCCGAGTCGGAAGCATAATCTTCTGAGTGTTGGTCAATTGCTTTAACGAGGACTCAAAGTTTCATTTGAAGATGGTGTTTGTGCAATCAAAGATCAAAGTGATGTTCTTATTGCTAAGGTGAAAATGACGAGTAATAAAATGTTTCCTATGAAGTTTACACATGGTCAAATTGCTTGCTTTATTATCATAGTAAAAGATCCATCTTGGCTTTCGCATTTTCGATAAGGTCACTCGAATTTTGGATCATTATCATATATGTGCAAAAATCATATGGTGAGAGGTCTTCAAAATATCAACCATGAGACAGATATTTGTGAGGTATGTATTCTTGCAAAACACCATCGGGAATCGTCTCCAATTGGTAAAGCTTGGAGAGCCTCCAAACCTATTGAACTTATTCATACTAATTTGTGTGGTCACATGGGCACAATATCTAACAGAGGTAATCATTATTTCATAACCTTCATTGATGATTTTAGTAGTAAATTGTAGATTTATTTTGTGAAAGAGAAAAGTGAAGCATTTCAATGTTTTAAAGCTTTTAAAGCTTTTGTTGAGAATCAAAGTGGCCATAAAATAAAAACGTTGAGATCTAACCACGGTGGAGAGTATATAGCTTTTTTTTATTATTATTTTTTCAAGGAGTATGGTATTCATCATCAAAAGACTGTTCGGATGACTCCACAATAGAATGAAGTTGCAGAAAGAAAGAACAGAACAATCATGGAAATGACTAGAAGTCTATTGAAAGCCAAAAAGATGCCAAATGAGTTTTGGGGAGATGTTATTGCATGTACTACCTACATCTTGAATCGAGCTCCAATGAAGAGTGTTCCAAGTATGACTCCTTATGAAGCATGGTATGGTGAGAAACCATGTGTTAGACACTTGAGAGTTTTTACGAGTATAGCTTATTCTCATGTTCCAGATAAGCTAAGATAAAATTAATCTAGACATTTTGCAAATACATGTATTAGCAATTAATTACATACATGAATTACTAGATACATTGATGAATGTTCACGTATTAGTGAAGGGTCACATTTCTTAATATTTACTATTAGTGTCTTTTGGTGTATTTCCTACTAGTATAAATATGTGTAGGATTTGTCATTTGTAATCAACTCAAGGAAAACAAAGTCTCTTACAAAATACAAGTTCTTGTTTGTTCAATTTAGTGTGAGTAATAGAACAATCTTCTTCTCTTGTCTGTTGATTTGTGTTGTGAGGACCTACTTCATTTTCAACAATATCTACTCAGCAGGCCGCACCACTAAATGGGAAGTCGTGGGACCATAACCAAGATCACTTATAGGCCAAATTCGCATCAATCTTCTAGAATAAAGGGAGCGACGAGACCTGCAAAATAGAATAACACTAAAGACCGGTGTGGCTCTCGTCACACAGGCTTCGATGCTTAAGTCAGAATTGGAGTAGTTGAATAGGAAGAAGTGCTTTTGCATAGTAAAGAGTAGAGATTTGTAGCATACCTCAACTATGAGTATTTTCCTTCTATTTAAAGAGGGAAACACCAAGTATCACTAGGATATCTTATTTGAATTTAGGGACAATCTTAAGGACTTCAAGATATCTTCCTTTTTGAATTCCTAAAGGGAATTTGAATCGTAGAAAATAGTGATTTTCTCATCCATAACAATAACCCCCACTCTCAAAGTTGAAGATAACGAGTTATTCAAAATGTCAAACTTTTGCTTTGAAAGTATTTTGTCGTTCATGGGCTGACCATTTTTATAGAACAACCCCACACCCTTTTGTCATAGTCAGTTGTCGTTTCACGGGCTGGCCTTCTTAGCCCCCATACATTTTTGTCGTAGTTGGCTGTAATCATGTCTTTTGCACTCTACTATACGGTTAGTTTTAACCGTTAGATTTTGGCCTTGGGATCTAAAGTAGGACTGGTACCTTCTTTGGGTTTTTAACCTATTTGACTTTTGCCCATGATTTTATACCCCAAAATTTACTCTTGGATTTCTAACCTATTTGGCTTTCGCCAATGGTTTTATACTCTGAATTTAGTTGGCACCCTTGGGTTTCTAACCTATTTGGCTTTTACCGGTTTTTTACCCTGAGTTTAATCAATACCTCTAGGTTTCTAACCTATTTTGGCTTTTGCCAAATGGTTTTATACCCTGGGTTTTGTTGATTGGTTTGGCATGCCTTTCAGCACCTTTGGGATTCTCTTCCCCGATTTCACTGACTGACTTTTAGCTTATCGACCTGCTTATAGGTTTGTCCCAATTAGAGTTCTTTGACCAGTTCTTGATTAACTTACCCAAGATCTGTTCTAAACTTATCGATTCGATTTTCCCTCGGCTACCTCAGGTAGGGGCAACCCCCGAGTCGTATGGCATTCGTCATTAGAGAGTTGTGGTCTGCCTCCAGAATCCATGTCGACTTGTTTCTCCCGAGATTTCCTCGGATCCAAGCAGTCGGTCAATTGGTTGTAAATCGTTTTACTTTTAAATCTTAGTCGTCCCCACAGACGGCTCCAATTGTTGATGCAGAAATTTGGTCTCTTCAGATGTTGTTAAATTCACATCAATCTTCTAGAATAAAGGGAGCGACGAGACCTGTAAAATAGAACAGCACTAAAGACTGGTGTTAGGAAGAACCGCTTATGCATAGCAAAGAGTAGAGATTTGTAGCATATCTCAACTATGAGTATTTTCCTTCTATTTATAGAGGGAAAAACCTAGTATCACTAGCATATCTTATTTGAATCTAGGGAGAATCTCGAGATCATCAAGATATCTTCTCCTTTTGATTATAGGATATCTTCTTCTGAATGTTAAGGCACCAGGATATCTTCCCTTTTGAATTCGTAAAGGGAATTTGAATTGTAGAAAATAGTGATTTTCTCATCCATAACACTTAGGTTTGTCACATTAGTGCTGGGACGTCTGCTCGTCGTTGAGCATGGCGCTTGGCGTGGATTTCGACTGTTTCTTTTATCTAGAGGGAGTGTAATACTAGAGTTCATGTGTGTGCGGTGGGTCGGTCGCCTTCTGTCCTCCTACGCGCCTTGAAAGCTAAGGTCTATTATCGTTGTACTACCTGGCTTGGGAGCTGTTTGAGTTCTGATCCTATGTTTATCTCGGCCTAG

mRNA sequence

ATGATGTTACTTCTCCTGAGGAAGCTTTCCAGATACAAACCTCCTTCAAAGGCGATTCTCGTAGAAGACGTGGTAGTCGTGGTAGACGAGGAGGTGGAAGAAACTATGACAATAGAAATGGTGCGAGTTTTGAAAACAAGTAAGAAAACTTTTCCTCATCTCGAGGAAAATGAGATGGAAGAGGAAGATGTTTTGGTAGAAACCAACGAAATGGTCATGGCAATTTCTCTTACATTCAATATTTTAATTGCAAAAAGTTTGTCCCAATTAGAGTTCTTTGACCAGTTCTTGATTAACTTACCCAAGATCTGTTCTAAACTTATCGATTCGATTTTCCCTCGGCTACCTCAGAGGGAGTGTAATACTAGAGTTCATGTGTGTGCGGTGGGTCGGTCGCCTTCTGTCCTCCTACGCGCCTTGAAAGCTAAGGTCTATTATCGTTGTACTACCTGGCTTGGGAGCTGTTTGAGTTCTGATCCTATGTTTATCTCGGCCTAG

Coding sequence (CDS)

ATGATGTTACTTCTCCTGAGGAAGCTTTCCAGATACAAACCTCCTTCAAAGGCGATTCTCGTAGAAGACGTGGTAGTCGTGGTAGACGAGGAGGTGGAAGAAACTATGACAATAGAAATGGTGCGAGTTTTGAAAACAAGTAAGAAAACTTTTCCTCATCTCGAGGAAAATGAGATGGAAGAGGAAGATGTTTTGGTAGAAACCAACGAAATGGTCATGGCAATTTCTCTTACATTCAATATTTTAATTGCAAAAAGTTTGTCCCAATTAGAGTTCTTTGACCAGTTCTTGATTAACTTACCCAAGATCTGTTCTAAACTTATCGATTCGATTTTCCCTCGGCTACCTCAGAGGGAGTGTAATACTAGAGTTCATGTGTGTGCGGTGGGTCGGTCGCCTTCTGTCCTCCTACGCGCCTTGAAAGCTAAGGTCTATTATCGTTGTACTACCTGGCTTGGGAGCTGTTTGAGTTCTGATCCTATGTTTATCTCGGCCTAG

Protein sequence

MMLLLLRKLSRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFNILIAKSLSQLEFFDQFLINLPKICSKLIDSIFPRLPQRECNTRVHVCAVGRSPSVLLRALKAKVYYRCTTWLGSCLSSDPMFISA

Homology

[Close]

BLAST of Moc09g28440 vs. NCBI nr
Match: KAA0058989.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-09
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 10  SRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETN 69
           S Y+   K + VEDVV++ DE VEETM IE+V++LK   K   +LEE E EEE+ L ET 
Sbjct: 102 STYQGEDKVVHVEDVVILKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETK 161

Query: 70  EMVMAISLTFNILIAK 86
           E+V+ ISLT N+LIA+
Sbjct: 162 EVVVVISLTLNVLIAE 177

[Close]

BLAST of Moc09g28440 vs. NCBI nr
Match: KAA0037654.1 (integrase [Cucumis melo var. makuwa] >TYK22799.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 7   RKLSRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLV 66
           + LS     S  I VEDVVV+ DEEVEETM IE++++LK  KK   +LEE E E+++ L 
Sbjct: 137 KDLSTLSINSLVIHVEDVVVMEDEEVEETMIIELMQILKIHKKALLYLEEEEAEKKEALA 196

Query: 67  ETNEMVMAISLTFNILIAK 86
           ET E+V+ ISLTFN LIA+
Sbjct: 197 ETKEVVVVISLTFNALIAE 215

[Close]

BLAST of Moc09g28440 vs. NCBI nr
Match: KAA0033891.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
          +EDVVV+ DEEVEETM IE V++LK  KK   +LEE E +EE+ L ET E+V  ISL FN
Sbjct: 1  MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALTETKEVVGVISLKFN 60

Query: 81 ILIAKSL 88
           LIA+SL
Sbjct: 61 ALIAESL 67

[Close]

BLAST of Moc09g28440 vs. NCBI nr
Match: TYK01275.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
          +EDVVV+ DEEVEETM IE V++LK  KK   +LEE E +EE+ L ET E+V  ISL FN
Sbjct: 1  MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALAETKEVVGVISLKFN 60

Query: 81 ILIAKSL 88
           LIA+SL
Sbjct: 61 ALIAESL 67

[Close]

BLAST of Moc09g28440 vs. NCBI nr
Match: TYK19542.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-08
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 21  VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
           VEDVVV+ DE VEETM IE+V++LK   K   +LEE E EEE+ L ET E+V+ ISLT N
Sbjct: 118 VEDVVVLKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVISLTLN 177

Query: 81  ILIAK 86
           +LIA+
Sbjct: 178 VLIAE 182

[Close]

BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match: A0A5A7UZN5 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00030 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.9e-10
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 10  SRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETN 69
           S Y+   K + VEDVV++ DE VEETM IE+V++LK   K   +LEE E EEE+ L ET 
Sbjct: 102 STYQGEDKVVHVEDVVILKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETK 161

Query: 70  EMVMAISLTFNILIAK 86
           E+V+ ISLT N+LIA+
Sbjct: 162 EVVVVISLTLNVLIAE 177

[Close]

BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match: A0A5D3DHS9 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00370 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 7   RKLSRYKPPSKAILVEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLV 66
           + LS     S  I VEDVVV+ DEEVEETM IE++++LK  KK   +LEE E E+++ L 
Sbjct: 137 KDLSTLSINSLVIHVEDVVVMEDEEVEETMIIELMQILKIHKKALLYLEEEEAEKKEALA 196

Query: 67  ETNEMVMAISLTFNILIAK 86
           ET E+V+ ISLTFN LIA+
Sbjct: 197 ETKEVVVVISLTFNALIAE 215

[Close]

BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match: A0A5D3BQ20 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00620 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
          +EDVVV+ DEEVEETM IE V++LK  KK   +LEE E +EE+ L ET E+V  ISL FN
Sbjct: 1  MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALAETKEVVGVISLKFN 60

Query: 81 ILIAKSL 88
           LIA+SL
Sbjct: 61 ALIAESL 67

[Close]

BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match: A0A5A7SWQ3 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00760 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 21 VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
          +EDVVV+ DEEVEETM IE V++LK  KK   +LEE E +EE+ L ET E+V  ISL FN
Sbjct: 1  MEDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALTETKEVVGVISLKFN 60

Query: 81 ILIAKSL 88
           LIA+SL
Sbjct: 61 ALIAESL 67

[Close]

BLAST of Moc09g28440 vs. ExPASy TrEMBL
Match: A0A5D3D7N1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00370 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 21  VEDVVVVVDEEVEETMTIEMVRVLKTSKKTFPHLEENEMEEEDVLVETNEMVMAISLTFN 80
           VEDVVV+ DE VEETM IE+V++LK   K   +LEE E EEE+ L ET E+V+ ISLT N
Sbjct: 118 VEDVVVLKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVISLTLN 177

Query: 81  ILIAK 86
           +LIA+
Sbjct: 178 VLIAE 182

The following BLAST results are available for this feature:

BLAST of Moc09g28440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058989.1	1.8e-09	53.95	integrase [Cucumis melo var. makuwa]	[more]
KAA0037654.1	5.4e-09	54.43	integrase [Cucumis melo var. makuwa] >TYK22799.1 integrase [Cucumis melo var. ma...	[more]
KAA0033891.1	3.5e-08	61.19	integrase [Cucumis melo var. makuwa]	[more]
TYK01275.1	3.5e-08	61.19	integrase [Cucumis melo var. makuwa]	[more]
TYK19542.1	5.9e-08	60.00	integrase [Cucumis melo var. makuwa]	[more]

BLAST of Moc09g28440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g28440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZN5	8.9e-10	53.95	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00030 PE=4...	[more]
A0A5D3DHS9	2.6e-09	54.43	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00370 PE=4...	[more]
A0A5D3BQ20	1.7e-08	61.19	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00620 PE=4 ...	[more]
A0A5A7SWQ3	1.7e-08	61.19	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00760 PE...	[more]
A0A5D3D7N1	2.9e-08	60.00	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00370 PE=4...	[more]

BLAST of Moc09g28440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g28440.1	Moc09g28440.1	mRNA