Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGATCAAAAAGCTGAGCAGAAGAAAATAAGGAAAGACATTGAGGAGTTGCGCGAAAAGTTAGATGTCATCCTCTTCGCGTTAGAAAAAGGCAAGACGGTTGCGGATCCTGCTACATCTAGCAACCTCGTCCATGAGCCACAAGAAACCCCGCCTTATCCATTTGGGTACAGTCCACCTTTTAGGCCAGTAGCAGAGGGTTTCATGCCACAACATACAATGTACAACCCTCTGTATGATATTCCGGTTGGTTAGTACCCAGCTCCCTTTGTTAAGGGAGCTCAACAAATCCTAACCAACATCATTTTTCGAGAGCCCGAGCAAATGATGTCACCCCCTACAGTCCTTAATCTAGGTGGTCTCCTAGTCAAGACATACCCAGTCAGACAAAGTGCCTCCAGTAACGAGAAGTTCGAAGTTCTGTTGGAAAGATTAAGAGCAGTAGAGGGGACCTGGCAATATTGATGCCTCTCAATTGTGTTTGATATCTGGATTAGTCATCCCTTCGAAGTTTAAGGTGCTAGAATTCGAGAAATATGATGGTTCTTCTTGTCTTAAGAACCACCTTATAATGTACTGTAGGAAGATGACAGTGTACGTCCAAAATGACAAACTGTTGATACACTACATTCAAGATAGTTTATCTAGTCCAGCTTCTCGTTTGTACATGCAGTTGGACAGCTTTCATGTCGGCTCGTGGAAGAATCTGGTCGACTCATTCCTTAAGCAATATAAACATATAGATATGGCTCTAGATCGCTTATACTAG
mRNA sequence
ATGACAGATCAAAAAGCTGAGCAGAAGAAAATAAGGAAAGACATTGAGGAGTTGCGCGAAAAGTTAGATGTCATCCTCTTCGCGTTAGAAAAAGGCAAGACGGTTGCGGATCCTGCTACATCTAGCAACCTCGTCCATGAGCCACAAGAAACCCCGCCTTATCCATTTGGGTACAGTCCACCTTTTAGGCCAGTAGCAGAGGGTTTCATGCCACAACATACAATGTACAACCCTCTGTATGATATTCCGGTTGTCATCCCTTCGAAGTTTAAGGTGCTAGAATTCGAGAAATATGATGGTTCTTCTTGTCTTAAGAACCACCTTATAATGTACTGTAGGAAGATGACAGTGTACGTCCAAAATGACAAACTGTTGATACACTACATTCAAGATAGTTTATCTAGTCCAGCTTCTCGTTTGTACATGCAGTTGGACAGCTTTCATGTCGGCTCGTGGAAGAATCTGGTCGACTCATTCCTTAAGCAATATAAACATATAGATATGGCTCTAGATCGCTTATACTAG
Coding sequence (CDS)
ATGACAGATCAAAAAGCTGAGCAGAAGAAAATAAGGAAAGACATTGAGGAGTTGCGCGAAAAGTTAGATGTCATCCTCTTCGCGTTAGAAAAAGGCAAGACGGTTGCGGATCCTGCTACATCTAGCAACCTCGTCCATGAGCCACAAGAAACCCCGCCTTATCCATTTGGGTACAGTCCACCTTTTAGGCCAGTAGCAGAGGGTTTCATGCCACAACATACAATGTACAACCCTCTGTATGATATTCCGGTTGTCATCCCTTCGAAGTTTAAGGTGCTAGAATTCGAGAAATATGATGGTTCTTCTTGTCTTAAGAACCACCTTATAATGTACTGTAGGAAGATGACAGTGTACGTCCAAAATGACAAACTGTTGATACACTACATTCAAGATAGTTTATCTAGTCCAGCTTCTCGTTTGTACATGCAGTTGGACAGCTTTCATGTCGGCTCGTGGAAGAATCTGGTCGACTCATTCCTTAAGCAATATAAACATATAGATATGGCTCTAGATCGCTTATACTAG
Protein sequence
MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTMYNPLYDIPVVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKHIDMALDRLY
Homology
BLAST of Moc09g12640 vs. NCBI nr
Match:
XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])
HSP 1 Score: 242.3 bits (617), Expect = 3.2e-60
Identity = 140/259 (54.05%), Postives = 145/259 (55.98%), Query Frame = 0
Query: 1 MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSP 60
M DQKAEQ+K RKDIEELREKLD I LEKGK ADPATSSN +HEPQETPPYP GY P
Sbjct: 1 MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60
Query: 61 PFRPVAEGFMPQHTMYNPLYDIPV------------------------------------ 120
P RPVAEGFMPQ+T YNPLYD+P+
Sbjct: 61 PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQQIPTNIIFREPEQMMSPPTVXNLG 120
Query: 121 -------------------------------------------------VIPSKFKVLEF 174
VIP KFKV EF
Sbjct: 121 GXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLVIPPKFKVPEF 180
BLAST of Moc09g12640 vs. NCBI nr
Match:
XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])
HSP 1 Score: 198.7 bits (504), Expect = 4.0e-47
Identity = 123/264 (46.59%), Postives = 138/264 (52.27%), Query Frame = 0
Query: 3 DQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGY---- 62
D+K+EQ+K RKDIEELREKLD IL ALEKGKT+A+ +SN +HEP TP +P G+
Sbjct: 4 DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAE---TSNPIHEP-PTPQFPPGFEPSF 63
Query: 63 ---SPPFRPVAEGFMPQHTMYNPLYDIP-------------------------------- 122
P FRP+ EGFM Q+T YNPLYDIP
Sbjct: 64 RPAGPSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRGPPQAPAGIIFQEPEQVIAPPT 123
Query: 123 -----------------------------------------------------VVIPSKF 174
+VIP KF
Sbjct: 124 VLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLVIPPKF 183
BLAST of Moc09g12640 vs. NCBI nr
Match:
XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])
HSP 1 Score: 155.6 bits (392), Expect = 3.9e-34
Identity = 78/91 (85.71%), Postives = 79/91 (86.81%), Query Frame = 0
Query: 84 VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQ 143
+VIP KFKV EFEKYDGSSC KNHLIMYCRKM YVQNDKLLIH QDSLSSPASR YMQ
Sbjct: 111 LVIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSSPASRWYMQ 170
Query: 144 LDSFHVGSWKNLVDSFLKQYKH-IDMALDRL 174
LDS HVGSWKNL DSFLKQYKH IDMA DRL
Sbjct: 171 LDSSHVGSWKNLADSFLKQYKHNIDMAPDRL 201
BLAST of Moc09g12640 vs. NCBI nr
Match:
KAA0038145.1 (Gag-pro-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.2 bits (391), Expect = 5.1e-34
Identity = 86/182 (47.25%), Postives = 122/182 (67.03%), Query Frame = 0
Query: 1 MTDQKAEQKKIRKDIEELREKLDVI--LFALEKGKTVADPATSSNLVHEPQETPPYPFGY 60
M ++ + K+R++I L E++ I L ++ KGK V D SSN + + + P +P G+
Sbjct: 1 MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTIQSSNPIQDTDD-PIFPPGF 60
Query: 61 SPPFRPVAEGFMPQHTM-YNPLYDIP-----VVIPSKFKVLEFEKYDGSSCLKNHLIMYC 120
+P V + QH + NPLY +P ++IP+KFKV EF+KYDGS+C ++HLIMYC
Sbjct: 61 TPYHMNVPQSQTIQHYVPTNPLYVVPPIVPGLIIPAKFKVPEFDKYDGSTCPRSHLIMYC 120
Query: 121 RKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALD 174
RK+ ++ NDKLL+H QDSL+ ASR Y+QLD+ H+ WK+L D+FLKQYKH IDMA D
Sbjct: 121 RKIAAHINNDKLLVHCFQDSLTGSASRWYIQLDNAHIHVWKDLADAFLKQYKHSIDMAPD 180
BLAST of Moc09g12640 vs. NCBI nr
Match:
XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])
HSP 1 Score: 151.4 bits (381), Expect = 7.3e-33
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0
Query: 84 VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQ 143
+VIP KFKV EFEKYDGSSC KNHLIMYCRKM YVQNDKLLIH QDSLS PASR YMQ
Sbjct: 60 LVIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQ 119
Query: 144 LDSFHVGSWKNLVDSFLKQYKH-IDMALDRL 174
LDS +VGSWKNL DSFLKQYKH IDMA DRL
Sbjct: 120 LDSSNVGSWKNLADSFLKQYKHNIDMAPDRL 150
BLAST of Moc09g12640 vs. ExPASy TrEMBL
Match:
A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)
HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 140/259 (54.05%), Postives = 145/259 (55.98%), Query Frame = 0
Query: 1 MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSP 60
M DQKAEQ+K RKDIEELREKLD I LEKGK ADPATSSN +HEPQETPPYP GY P
Sbjct: 1 MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60
Query: 61 PFRPVAEGFMPQHTMYNPLYDIPV------------------------------------ 120
P RPVAEGFMPQ+T YNPLYD+P+
Sbjct: 61 PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQQIPTNIIFREPEQMMSPPTVXNLG 120
Query: 121 -------------------------------------------------VIPSKFKVLEF 174
VIP KFKV EF
Sbjct: 121 GXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLVIPPKFKVPEF 180
BLAST of Moc09g12640 vs. ExPASy TrEMBL
Match:
A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)
HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 124/264 (46.97%), Postives = 138/264 (52.27%), Query Frame = 0
Query: 3 DQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGY---- 62
D+K+EQ+K RKDIEELREKLD IL ALEKGKT+A+ +SN +HEP TP +P G+
Sbjct: 4 DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAE---TSNPIHEP-PTPQFPPGFEPSF 63
Query: 63 ---SPPFRPVAEGFMPQHTMYNPLYDIP-------------------------------- 122
P FRP+ EGFM Q+T YNPLYDIP
Sbjct: 64 RPAGPSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRGPPQAPAGIIFQEPEQVIAPPT 123
Query: 123 -----------------------------------------------------VVIPSKF 174
+VIP KF
Sbjct: 124 VLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLVIPPKF 183
BLAST of Moc09g12640 vs. ExPASy TrEMBL
Match:
A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 78/91 (85.71%), Postives = 79/91 (86.81%), Query Frame = 0
Query: 84 VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQ 143
+VIP KFKV EFEKYDGSSC KNHLIMYCRKM YVQNDKLLIH QDSLSSPASR YMQ
Sbjct: 111 LVIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSSPASRWYMQ 170
Query: 144 LDSFHVGSWKNLVDSFLKQYKH-IDMALDRL 174
LDS HVGSWKNL DSFLKQYKH IDMA DRL
Sbjct: 171 LDSSHVGSWKNLADSFLKQYKHNIDMAPDRL 201
BLAST of Moc09g12640 vs. ExPASy TrEMBL
Match:
A0A5A7T9N7 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003730 PE=4 SV=1)
HSP 1 Score: 155.2 bits (391), Expect = 2.5e-34
Identity = 86/182 (47.25%), Postives = 122/182 (67.03%), Query Frame = 0
Query: 1 MTDQKAEQKKIRKDIEELREKLDVI--LFALEKGKTVADPATSSNLVHEPQETPPYPFGY 60
M ++ + K+R++I L E++ I L ++ KGK V D SSN + + + P +P G+
Sbjct: 1 MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTIQSSNPIQDTDD-PIFPPGF 60
Query: 61 SPPFRPVAEGFMPQHTM-YNPLYDIP-----VVIPSKFKVLEFEKYDGSSCLKNHLIMYC 120
+P V + QH + NPLY +P ++IP+KFKV EF+KYDGS+C ++HLIMYC
Sbjct: 61 TPYHMNVPQSQTIQHYVPTNPLYVVPPIVPGLIIPAKFKVPEFDKYDGSTCPRSHLIMYC 120
Query: 121 RKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALD 174
RK+ ++ NDKLL+H QDSL+ ASR Y+QLD+ H+ WK+L D+FLKQYKH IDMA D
Sbjct: 121 RKIAAHINNDKLLVHCFQDSLTGSASRWYIQLDNAHIHVWKDLADAFLKQYKHSIDMAPD 180
BLAST of Moc09g12640 vs. ExPASy TrEMBL
Match:
A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)
HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0
Query: 84 VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQ 143
+VIP KFKV EFEKYDGSSC KNHLIMYCRKM YVQNDKLLIH QDSLS PASR YMQ
Sbjct: 60 LVIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQ 119
Query: 144 LDSFHVGSWKNLVDSFLKQYKH-IDMALDRL 174
LDS +VGSWKNL DSFLKQYKH IDMA DRL
Sbjct: 120 LDSSNVGSWKNLADSFLKQYKHNIDMAPDRL 150
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022157796.1 | 3.2e-60 | 54.05 | LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia] | [more] |
XP_022155098.1 | 4.0e-47 | 46.59 | LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... | [more] |
XP_022143495.1 | 3.9e-34 | 85.71 | LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia] | [more] |
KAA0038145.1 | 5.1e-34 | 47.25 | Gag-pro-like protein [Cucumis melo var. makuwa] | [more] |
XP_022158986.1 | 7.3e-33 | 83.52 | LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DZ90 | 1.5e-60 | 54.05 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1 | [more] |
A0A6J1DM29 | 1.1e-47 | 46.97 | LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... | [more] |
A0A6J1CNY7 | 1.9e-34 | 85.71 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1 | [more] |
A0A5A7T9N7 | 2.5e-34 | 47.25 | Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G... | [more] |
A0A6J1E2J7 | 3.6e-33 | 83.52 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |