Moc05g22860 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g22860
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr5: 16342173 .. 16343064 (+)
RNA-Seq Expression	Moc05g22860
Synteny	Moc05g22860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTGCTCATATGGTCGATATAAATCCACCACCTTACTTGGAAGATATGTATCACTATGCTATCAAAATTGAAGATCAATTGAGGAAAAAAATGAGCATTCCAAAAAGATTGAATCAGTGCAACCAAAAGGGAAGTTTGGTGTTGCCAAACGAGTGGAGCAAGAGCTGCAATACCAAAAAGAATGAAGATCCAGTGGAGGTAAGGGAGAGACTAATTCTATTAAATGTTGGTAGTACATAGGGTTTGGACACACGAGCAAACAATGTGTCAATAAAATAGTCATGGTATAAGAAATGAAAAACTTGAGTCGAATGACGTTTGTGAGAAACATGATACACAACTTGAGGAAGAATCTAGAGCACATGATGGTGAATTTATTGAAAAAAATAACAAAGATTCTGATGTTGATGAAAGTAAGTTGAAAGAAAATAGTGAAAGCGAATATTTAAGAGAAAGGAATGCAAATGATAAAGAAGAGGAAAAGAGCAAGGTCCAATCCATTTGTCCATATGGGCAAAAATTAATGAATGTATTGAAGAAGGACCCTTACTATCAAGCTCACATATTTGATCTTAGTGTTTCTACTTTTCAAAGTTTTTTGCAAGAAATTTCAGCCCTTCAAATCAAGCATGGTTAAATACAAGTAACAAAGGAAGCTATGATGGAGCCAACAAGAGTTATCCTATCATCTTCTCGTGATCTTAAGATTGTCTTACAAGAAACATATAAAATAGATCTTGATTTTTAAGATACTAACTTGCTTCCTTATTGTGTAGGTAACCATGTACAAGTGAAGCCTAAGACGAAGGGAATTGTAGAAAACTACTTGTACAAGAAGTCTTCTAACAATGTCATCGTCGAAAACACACAATGTTGTGTTGCATAA

mRNA sequence

ATGGAAATTGCTCATATGGTCGATATAAATCCACCACCTTACTTGGAAGATATGTATCACTATGCTATCAAAATTGAAGATCAATTGAGGAAAAAAATGAGCATTCCAAAAAGATTGAATCAGTGCAACCAAAAGGGAAGTTTGGTGTTGCCAAACGAGTGGAGCAAGAGCTGCAATACCAAAAAGAATGAAGATCCAGTGGAGTCGAATGACGTTTGTGAGAAACATGATACACAACTTGAGGAAGAATCTAGAGCACATGATGGTGAATTTATTGAAAAAAATAACAAAGATTCTGATGTTGATGAAAGTAACCATGTACAAGTGAAGCCTAAGACGAAGGGAATTGTAGAAAACTACTTGTACAAGAAGTCTTCTAACAATGTCATCGTCGAAAACACACAATGTTGTGTTGCATAA

Coding sequence (CDS)

ATGGAAATTGCTCATATGGTCGATATAAATCCACCACCTTACTTGGAAGATATGTATCACTATGCTATCAAAATTGAAGATCAATTGAGGAAAAAAATGAGCATTCCAAAAAGATTGAATCAGTGCAACCAAAAGGGAAGTTTGGTGTTGCCAAACGAGTGGAGCAAGAGCTGCAATACCAAAAAGAATGAAGATCCAGTGGAGTCGAATGACGTTTGTGAGAAACATGATACACAACTTGAGGAAGAATCTAGAGCACATGATGGTGAATTTATTGAAAAAAATAACAAAGATTCTGATGTTGATGAAAGTAACCATGTACAAGTGAAGCCTAAGACGAAGGGAATTGTAGAAAACTACTTGTACAAGAAGTCTTCTAACAATGTCATCGTCGAAAACACACAATGTTGTGTTGCATAA

Protein sequence

MEIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTKKNEDPVESNDVCEKHDTQLEEESRAHDGEFIEKNNKDSDVDESNHVQVKPKTKGIVENYLYKKSSNNVIVENTQCCVA

Homology

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BLAST of Moc05g22860 vs. NCBI nr
Match: KAA0040926.1 (uncharacterized protein E6C27_scaffold125G00500 [Cucumis melo var. makuwa] >TYK10611.1 uncharacterized protein E5676_scaffold315G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-07
Identity = 55/152 (36.18%), Postives = 79/152 (51.97%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWS-KSCNT 61
           EIAH+VD NPP  +EDMYHYAIKIE QL+++    KR      +G  V   +   +S NT
Sbjct: 88  EIAHLVDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRNESMQSRGKFVAAKKVEVESSNT 147

Query: 62  KKNEDPVESND-------VCEKHDTQLEEESRAH-DGEFIEKNNKDSDVDESNHVQVKPK 121
           KK E   E ++        CE++D QLEEE     D E+IE+ N  S +     + VK K
Sbjct: 148 KKVEASKEVSEKTSSIQYECEENDAQLEEEYETPVDDEYIEEGNSISPITR-RVLNVKIK 207

Query: 122 TKGI--------VENYLYKKSSNNVIVENTQC 137
            + I        +   L + S  +++++N  C
Sbjct: 208 EEKIEDQRENLFLTRCLIEGSPCSLVIDNGSC 238

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BLAST of Moc05g22860 vs. NCBI nr
Match: XP_023520950.1 (uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-07
Identity = 56/166 (33.73%), Postives = 70/166 (42.17%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCN---------QKGSLVLPN 61
           EIAH+VD NPPPYLEDMYHYA+KIEDQL+++    KR               K S V  N
Sbjct: 11  EIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSNTWNKDSFVNRN 70

Query: 62  E---------------------------------------W--------SKSCNTKK--- 104
           E                                       W        SK C  KK   
Sbjct: 71  ESMSPKEKFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKECVNKKVMV 130

[Close]

BLAST of Moc05g22860 vs. NCBI nr
Match: XP_022153198.1 (uncharacterized protein LOC111020753 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-06
Identity = 50/157 (31.85%), Postives = 65/157 (41.40%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSK----- 61
           EIAH VD NPPPYLEDMYHY +KIEDQL+++    KR    ++  +    N W+K     
Sbjct: 234 EIAHAVDRNPPPYLEDMYHYVVKIEDQLKEEKEYSKRYT--SKANTYSNSNAWNKAGFVN 293

Query: 62  --------------------SCNTKKNEDP------------------------------ 97
                               S NTK+NE P                              
Sbjct: 294 RNESLQPKEKFVAAKRMEGESSNTKRNEAPKEVREKTSSIQCWKCKGFGHMSKDCVNKRV 353

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BLAST of Moc05g22860 vs. NCBI nr
Match: XP_023544048.1 (uncharacterized protein LOC111803745 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-06
Identity = 51/155 (32.90%), Postives = 65/155 (41.94%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRL---------NQCNQKGSLVLPN 61
           EIAH+VD NPPPYLEDMYHYA+KIEDQL+++    KR          ++   K S V  N
Sbjct: 102 EIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNIFSNSKTWNKDSFVNRN 161

Query: 62  E---------------------------------------WS--------KSCNTKK--- 97
           E                                       W         K C  KK   
Sbjct: 162 ESMSPKEKFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMRKECVNKKIMV 221

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BLAST of Moc05g22860 vs. NCBI nr
Match: XP_022932136.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTK 61
           EIAH+VD NPPPYLEDM HYA+KIEDQL+++    KR    ++  +      W+K     
Sbjct: 199 EIAHLVDRNPPPYLEDMCHYALKIEDQLKEEKEHSKRYT--SRTNTFSNSKTWNKDSFVN 258

Query: 62  KNE 65
           +NE
Sbjct: 259 RNE 259

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BLAST of Moc05g22860 vs. ExPASy TrEMBL
Match: A0A5A7TFV5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00780 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 55/152 (36.18%), Postives = 79/152 (51.97%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWS-KSCNT 61
           EIAH+VD NPP  +EDMYHYAIKIE QL+++    KR      +G  V   +   +S NT
Sbjct: 88  EIAHLVDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRNESMQSRGKFVAAKKVEVESSNT 147

Query: 62  KKNEDPVESND-------VCEKHDTQLEEESRAH-DGEFIEKNNKDSDVDESNHVQVKPK 121
           KK E   E ++        CE++D QLEEE     D E+IE+ N  S +     + VK K
Sbjct: 148 KKVEASKEVSEKTSSIQYECEENDAQLEEEYETPVDDEYIEEGNSISPITR-RVLNVKIK 207

Query: 122 TKGI--------VENYLYKKSSNNVIVENTQC 137
            + I        +   L + S  +++++N  C
Sbjct: 208 EEKIEDQRENLFLTRCLIEGSPCSLVIDNGSC 238

[Close]

BLAST of Moc05g22860 vs. ExPASy TrEMBL
Match: A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 50/157 (31.85%), Postives = 65/157 (41.40%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSK----- 61
           EIAH VD NPPPYLEDMYHY +KIEDQL+++    KR    ++  +    N W+K     
Sbjct: 234 EIAHAVDRNPPPYLEDMYHYVVKIEDQLKEEKEYSKRYT--SKANTYSNSNAWNKAGFVN 293

Query: 62  --------------------SCNTKKNEDP------------------------------ 97
                               S NTK+NE P                              
Sbjct: 294 RNESLQPKEKFVAAKRMEGESSNTKRNEAPKEVREKTSSIQCWKCKGFGHMSKDCVNKRV 353

[Close]

BLAST of Moc05g22860 vs. ExPASy TrEMBL
Match: A0A6J1EVI6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata OX=3662 GN=LOC111438459 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTK 61
           EIAH+VD NPPPYLEDM HYA+KIEDQL+++    KR    ++  +      W+K     
Sbjct: 199 EIAHLVDRNPPPYLEDMCHYALKIEDQLKEEKEHSKRYT--SRTNTFSNSKTWNKDSFVN 258

Query: 62  KNE 65
           +NE
Sbjct: 259 RNE 259

[Close]

BLAST of Moc05g22860 vs. ExPASy TrEMBL
Match: A0A5A7UR86 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00210 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 56/182 (30.77%), Postives = 82/182 (45.05%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNE-WSKSCNT 61
           EIAH+VD NPP  +EDMYHYAIKIE QL+++    KR      +G  V+  +  ++S NT
Sbjct: 160 EIAHLVDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRNESMQSRGKFVVAQKVETESSNT 219

Query: 62  KKNE-------------------------------------DPVESNDVCEKHDTQLEEE 121
           KK E                                       ++S D CE++D QLEEE
Sbjct: 220 KKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGMIDSEDECEENDAQLEEE 279

Query: 122 SRAH-DGEFIEKNNKDSDVDESNHVQVKPKTKGIVE--------NYLYKKSSNNVIVENT 137
                D E+IE+ +  S +     + VK K + I +          L K S  +++++N 
Sbjct: 280 YETPVDDEYIEEGSSISLITR-RVLNVKIKEEKIEDQRENLFHTRCLIKGSPCSLVIDNG 339

[Close]

BLAST of Moc05g22860 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-05
Identity = 51/155 (32.90%), Postives = 59/155 (38.06%), Query Frame = 0


Query: 2   EIAHMVDINPPPYLEDMYHYAIKIEDQLR----------------------KKMSIPKRL 61
           EIAH VD NPP YLEDMYHYA+KIEDQ +                      KK     R 
Sbjct: 200 EIAHAVDRNPPSYLEDMYHYAVKIEDQSKEEKEYSKRYTYKANTYSNSNAWKKAGFVNRN 259

Query: 62  NQCNQKGSLVLPNEW-SKSCNTKKNEDP-------------------------------- 97
                KG  V       +S NTKKNE P                                
Sbjct: 260 ESMQPKGKFVAAKRMEGESSNTKKNEAPKEVRENTSSIQCWKCKGFGHMSKDCVNKRVMV 319

The following BLAST results are available for this feature:

BLAST of Moc05g22860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040926.1	3.2e-07	36.18	uncharacterized protein E6C27_scaffold125G00500 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_023520950.1	9.4e-07	33.73	uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022153198.1	4.7e-06	31.85	uncharacterized protein LOC111020753 [Momordica charantia]	[more]
XP_023544048.1	6.1e-06	32.90	uncharacterized protein LOC111803745 [Cucurbita pepo subsp. pepo]	[more]
XP_022932136.1	4.0e-05	47.62	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita mo...	[more]

BLAST of Moc05g22860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g22860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFV5	1.6e-07	36.18	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1DGU9	2.3e-06	31.85	uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1EVI6	1.9e-05	47.62	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata ...	[more]
A0A5A7UR86	3.3e-05	30.77	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430...	[more]
A0A6J1DX75	4.3e-05	32.90	uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc05g22860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g22860.1	Moc05g22860.1	mRNA