Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAAGAATGTGTCAATAAAGAAGTCATGGTAATAAGAAATGGTGTCGTTGATTCAAATGATGGTTGTGAGAAATATGATGCAAAATTTGAGGAAGAATCTAAAGCACATGTTGATGAATTTATTAAACAAGATAGCAAACATTATGATGTTGATGAAAGTGAGTTGAAAGAAAAGAGAGAAAGAGAAGAGTTAAGAGAAAGGAATTCAAAGGAGAAAGAAGAGGACAAGAGCAAGATCCAATCCATTTGTCCATATAAGCCAAATCTTATGACATTGTTGCATAAGGACCCTTAGACCCTTACTATCAAGCTAACATACTTTATCCTAGTGTTTCTACTTTTCTAAGATTTTTGCAGGAAGTTCCAACTCTTCAAATCAAGTGTGGTCGAACACAAGTAACGATGGAAGCTATGATGGAGCCAACGAGAGTTATCCTATCATCTACTCATGATCTAAAGATTGTATTACAAGGTAAGTATAAAATAGATCTTGATTTTGAAGATACTAACTTGCTTCCTTATTGTGTAGGTAACCATGAACAAAAGAAACCTAAAGTGAACGGCATTGTGGAAAAGTATTTGTCTAAGAAGTCGCATAAAGAATTTCATGGCCAAGAACGCAGAATTGTATGTTGGAGGAAAAACAAATCCAAGAAAAATGTAAACAAACCAAGTGATTGGGTTTGGAAGCACTTTTGGAAGGAACAAAAAATTTGTCCAAATCCAAACATGAGAAGACTAAGAAGGATGATATTATATCAAGACTTCAAGATTGCACTTCAAGGAAGTCAAAAAGTTGTGTTAAATCAAGAAGGCAAACAAGAAGGGGCCATATAAATTTTCAAGAAGAAAGAAGTGACAAGTCCATGGAACACCCACAAGGTAAGGAACAAGTTGTTAAGGCTTATCATTGGACTAACTTGATTCGTTTTGATGTAGGAAATGAAGACCTTGATTTGAGGACAAGTCCTTTTAAAGAAAGGGGGGATGATACGAATCCATTTGTGACCAATTACATGTACCAAAGGAGCAATTACAAGAAGCAAGACAAGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAAGCTTGTTAATGCACAATAATCAACAAAGAGTTTTGAGCCCAAATTTGTTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGACACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAATGTGTGCATAATTGTAAACAGGTGCCTTGGCAGATTGCACCCCTTGGGAGTTTGTGAAGTCAAAGCTTGTCAAATGTCATCCAAATGTGAAGCGCCTCCTACAGCACGTAGATAAGACCATTTGA
mRNA sequence
ATGAGCAAAGAATGTGTCAATAAAGAAGTCATGGTAATAAGAAATGGTGTCGTTGATTCAAATGATGGTTGTGAGAAATATGATGCAAAATTTGAGGAAGAATCTAAAGCACATGTTGATGAATTTATTAAACAAGATAGCAAACATTATGATGTTGATGAAAGAAGTTCCAACTCTTCAAATCAAGTGTGGTCGAACACAAGTAACGATGGAAGCTATGATGGAGCCAACGAGAGTAACCATGAACAAAAGAAACCTAAAGTGAACGGCATTGTGGAAAAGTATTTGTCTAAGAAGTCGCATAAAGAATTTCATGGCCAAGAACGCAGAATTGTATGTGCCTTGGCAGATTGCACCCCTTGGGAGTTTGTGAAGTCAAAGCTTGTCAAATGTCATCCAAATGTGAAGCGCCTCCTACAGCACGTAGATAAGACCATTTGA
Coding sequence (CDS)
ATGAGCAAAGAATGTGTCAATAAAGAAGTCATGGTAATAAGAAATGGTGTCGTTGATTCAAATGATGGTTGTGAGAAATATGATGCAAAATTTGAGGAAGAATCTAAAGCACATGTTGATGAATTTATTAAACAAGATAGCAAACATTATGATGTTGATGAAAGAAGTTCCAACTCTTCAAATCAAGTGTGGTCGAACACAAGTAACGATGGAAGCTATGATGGAGCCAACGAGAGTAACCATGAACAAAAGAAACCTAAAGTGAACGGCATTGTGGAAAAGTATTTGTCTAAGAAGTCGCATAAAGAATTTCATGGCCAAGAACGCAGAATTGTATGTGCCTTGGCAGATTGCACCCCTTGGGAGTTTGTGAAGTCAAAGCTTGTCAAATGTCATCCAAATGTGAAGCGCCTCCTACAGCACGTAGATAAGACCATTTGA
Protein sequence
MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDSKHYDVDERSSNSSNQVWSNTSNDGSYDGANESNHEQKKPKVNGIVEKYLSKKSHKEFHGQERRIVCALADCTPWEFVKSKLVKCHPNVKRLLQHVDKTI
Homology
BLAST of Moc05g22190 vs. NCBI nr
Match:
KAA0025749.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
MSK+CVNK+VMVIRNG++DS D C+++DA EEES AH DE+I+ S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEGGS 164
BLAST of Moc05g22190 vs. NCBI nr
Match:
TYK06180.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 61.6 bits (148), Expect = 6.4e-06
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
MSK+CVNK+VMVIRNG++DS D +++DA EEES AH DE+I+ S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIEGGS 164
BLAST of Moc05g22190 vs. NCBI nr
Match:
XP_022153198.1 (uncharacterized protein LOC111020753 [Momordica charantia])
HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
MSK+CVNK VMVIRNGVVDS+D CE++D +FEE + +++E
Sbjct: 342 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEEFEERDEEYIEE 382
BLAST of Moc05g22190 vs. NCBI nr
Match:
XP_022158838.1 (uncharacterized protein LOC111025303 [Momordica charantia])
HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
MSK+CVNK VMVIRNGVVDS+D CE++D FEE + +++E
Sbjct: 308 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEXFEERDEEYIEE 348
BLAST of Moc05g22190 vs. NCBI nr
Match:
XP_023520950.1 (uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo])
HSP 1 Score: 58.2 bits (139), Expect = 7.1e-05
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQ----DSKHYDVDERS 60
MSKECVNK+VMVIRNG++DS+D CE +D++ EE A+ DE++++ K D +E+
Sbjct: 119 MSKECVNKKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEVKTKREKKNDFEEKR 178
BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match:
A0A5A7SKE7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00370 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
MSK+CVNK+VMVIRNG++DS D C+++DA EEES AH DE+I+ S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEGGS 164
BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match:
A0A5D3C4C3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00340 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
MSK+CVNK+VMVIRNG++DS D +++DA EEES AH DE+I+ S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIEGGS 164
BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match:
A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
MSK+CVNK VMVIRNGVVDS+D CE++D +FEE + +++E
Sbjct: 342 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEEFEERDEEYIEE 382
BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match:
A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
MSK+CVNK VMVIRNGVVDS+D CE++D FEE + +++E
Sbjct: 308 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEXFEERDEEYIEE 348
BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match:
A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 1 MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHV-DEFIKQDS 48
MSK+C+NK VMV+RNGV+DS D CE+ DA+ EEE + V DE+I++ S
Sbjct: 320 MSKDCINKRVMVVRNGVIDSEDECEENDAQLEEEYETPVDDEYIEEGS 367
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0025749.1 | 4.4e-07 | 63.83 | Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] | [more] |
| TYK06180.1 | 6.4e-06 | 61.70 | Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] | [more] |
| XP_022153198.1 | 2.4e-05 | 63.41 | uncharacterized protein LOC111020753 [Momordica charantia] | [more] |
| XP_022158838.1 | 4.2e-05 | 63.41 | uncharacterized protein LOC111025303 [Momordica charantia] | [more] |
| XP_023520950.1 | 7.1e-05 | 48.44 | uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SKE7 | 2.2e-07 | 63.83 | Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| A0A5D3C4C3 | 3.1e-06 | 61.70 | Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| A0A6J1DGU9 | 1.2e-05 | 63.41 | uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
| A0A6J1DX75 | 2.0e-05 | 63.41 | uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| A0A5D3C8C6 | 4.5e-05 | 58.33 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
