Moc05g22190 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g22190
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	chr5: 15926607 .. 15927965 (+)
RNA-Seq Expression	Moc05g22190
Synteny	Moc05g22190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAAGAATGTGTCAATAAAGAAGTCATGGTAATAAGAAATGGTGTCGTTGATTCAAATGATGGTTGTGAGAAATATGATGCAAAATTTGAGGAAGAATCTAAAGCACATGTTGATGAATTTATTAAACAAGATAGCAAACATTATGATGTTGATGAAAGTGAGTTGAAAGAAAAGAGAGAAAGAGAAGAGTTAAGAGAAAGGAATTCAAAGGAGAAAGAAGAGGACAAGAGCAAGATCCAATCCATTTGTCCATATAAGCCAAATCTTATGACATTGTTGCATAAGGACCCTTAGACCCTTACTATCAAGCTAACATACTTTATCCTAGTGTTTCTACTTTTCTAAGATTTTTGCAGGAAGTTCCAACTCTTCAAATCAAGTGTGGTCGAACACAAGTAACGATGGAAGCTATGATGGAGCCAACGAGAGTTATCCTATCATCTACTCATGATCTAAAGATTGTATTACAAGGTAAGTATAAAATAGATCTTGATTTTGAAGATACTAACTTGCTTCCTTATTGTGTAGGTAACCATGAACAAAAGAAACCTAAAGTGAACGGCATTGTGGAAAAGTATTTGTCTAAGAAGTCGCATAAAGAATTTCATGGCCAAGAACGCAGAATTGTATGTTGGAGGAAAAACAAATCCAAGAAAAATGTAAACAAACCAAGTGATTGGGTTTGGAAGCACTTTTGGAAGGAACAAAAAATTTGTCCAAATCCAAACATGAGAAGACTAAGAAGGATGATATTATATCAAGACTTCAAGATTGCACTTCAAGGAAGTCAAAAAGTTGTGTTAAATCAAGAAGGCAAACAAGAAGGGGCCATATAAATTTTCAAGAAGAAAGAAGTGACAAGTCCATGGAACACCCACAAGGTAAGGAACAAGTTGTTAAGGCTTATCATTGGACTAACTTGATTCGTTTTGATGTAGGAAATGAAGACCTTGATTTGAGGACAAGTCCTTTTAAAGAAAGGGGGGATGATACGAATCCATTTGTGACCAATTACATGTACCAAAGGAGCAATTACAAGAAGCAAGACAAGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAAGCTTGTTAATGCACAATAATCAACAAAGAGTTTTGAGCCCAAATTTGTTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGACACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAATGTGTGCATAATTGTAAACAGGTGCCTTGGCAGATTGCACCCCTTGGGAGTTTGTGAAGTCAAAGCTTGTCAAATGTCATCCAAATGTGAAGCGCCTCCTACAGCACGTAGATAAGACCATTTGA

mRNA sequence

ATGAGCAAAGAATGTGTCAATAAAGAAGTCATGGTAATAAGAAATGGTGTCGTTGATTCAAATGATGGTTGTGAGAAATATGATGCAAAATTTGAGGAAGAATCTAAAGCACATGTTGATGAATTTATTAAACAAGATAGCAAACATTATGATGTTGATGAAAGAAGTTCCAACTCTTCAAATCAAGTGTGGTCGAACACAAGTAACGATGGAAGCTATGATGGAGCCAACGAGAGTAACCATGAACAAAAGAAACCTAAAGTGAACGGCATTGTGGAAAAGTATTTGTCTAAGAAGTCGCATAAAGAATTTCATGGCCAAGAACGCAGAATTGTATGTGCCTTGGCAGATTGCACCCCTTGGGAGTTTGTGAAGTCAAAGCTTGTCAAATGTCATCCAAATGTGAAGCGCCTCCTACAGCACGTAGATAAGACCATTTGA

Coding sequence (CDS)

ATGAGCAAAGAATGTGTCAATAAAGAAGTCATGGTAATAAGAAATGGTGTCGTTGATTCAAATGATGGTTGTGAGAAATATGATGCAAAATTTGAGGAAGAATCTAAAGCACATGTTGATGAATTTATTAAACAAGATAGCAAACATTATGATGTTGATGAAAGAAGTTCCAACTCTTCAAATCAAGTGTGGTCGAACACAAGTAACGATGGAAGCTATGATGGAGCCAACGAGAGTAACCATGAACAAAAGAAACCTAAAGTGAACGGCATTGTGGAAAAGTATTTGTCTAAGAAGTCGCATAAAGAATTTCATGGCCAAGAACGCAGAATTGTATGTGCCTTGGCAGATTGCACCCCTTGGGAGTTTGTGAAGTCAAAGCTTGTCAAATGTCATCCAAATGTGAAGCGCCTCCTACAGCACGTAGATAAGACCATTTGA

Protein sequence

MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDSKHYDVDERSSNSSNQVWSNTSNDGSYDGANESNHEQKKPKVNGIVEKYLSKKSHKEFHGQERRIVCALADCTPWEFVKSKLVKCHPNVKRLLQHVDKTI

Homology

[Close]

BLAST of Moc05g22190 vs. NCBI nr
Match: KAA0025749.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
           MSK+CVNK+VMVIRNG++DS D C+++DA  EEES AH DE+I+  S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEGGS 164

[Close]

BLAST of Moc05g22190 vs. NCBI nr
Match: TYK06180.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-06
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
           MSK+CVNK+VMVIRNG++DS D  +++DA  EEES AH DE+I+  S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIEGGS 164

[Close]

BLAST of Moc05g22190 vs. NCBI nr
Match: XP_022153198.1 (uncharacterized protein LOC111020753 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
           MSK+CVNK VMVIRNGVVDS+D CE++D +FEE  + +++E
Sbjct: 342 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEEFEERDEEYIEE 382

[Close]

BLAST of Moc05g22190 vs. NCBI nr
Match: XP_022158838.1 (uncharacterized protein LOC111025303 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
           MSK+CVNK VMVIRNGVVDS+D CE++D  FEE  + +++E
Sbjct: 308 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEXFEERDEEYIEE 348

[Close]

BLAST of Moc05g22190 vs. NCBI nr
Match: XP_023520950.1 (uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-05
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQ----DSKHYDVDERS 60
           MSKECVNK+VMVIRNG++DS+D CE +D++  EE  A+ DE++++      K  D +E+ 
Sbjct: 119 MSKECVNKKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEVKTKREKKNDFEEKR 178

[Close]

BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match: A0A5A7SKE7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00370 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
           MSK+CVNK+VMVIRNG++DS D C+++DA  EEES AH DE+I+  S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDECDEHDAPLEEESDAHDDEYIEGGS 164

[Close]

BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match: A0A5D3C4C3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00340 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDEFIKQDS 48
           MSK+CVNK+VMVIRNG++DS D  +++DA  EEES AH DE+I+  S
Sbjct: 118 MSKDCVNKKVMVIRNGIIDSKDESDEHDAPLEEESDAHDDEYIEGGS 164

[Close]

BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match: A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
           MSK+CVNK VMVIRNGVVDS+D CE++D +FEE  + +++E
Sbjct: 342 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEEFEERDEEYIEE 382

[Close]

BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHVDE 42
           MSK+CVNK VMVIRNGVVDS+D CE++D  FEE  + +++E
Sbjct: 308 MSKDCVNKRVMVIRNGVVDSDDDCEEHDEXFEERDEEYIEE 348

[Close]

BLAST of Moc05g22190 vs. ExPASy TrEMBL
Match: A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   MSKECVNKEVMVIRNGVVDSNDGCEKYDAKFEEESKAHV-DEFIKQDS 48
           MSK+C+NK VMV+RNGV+DS D CE+ DA+ EEE +  V DE+I++ S
Sbjct: 320 MSKDCINKRVMVVRNGVIDSEDECEENDAQLEEEYETPVDDEYIEEGS 367

The following BLAST results are available for this feature:

BLAST of Moc05g22190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025749.1	4.4e-07	63.83	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK06180.1	6.4e-06	61.70	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_022153198.1	2.4e-05	63.41	uncharacterized protein LOC111020753 [Momordica charantia]	[more]
XP_022158838.1	4.2e-05	63.41	uncharacterized protein LOC111025303 [Momordica charantia]	[more]
XP_023520950.1	7.1e-05	48.44	uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc05g22190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g22190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKE7	2.2e-07	63.83	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C4C3	3.1e-06	61.70	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DGU9	1.2e-05	63.41	uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DX75	2.0e-05	63.41	uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3C8C6	4.5e-05	58.33	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Moc05g22190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g22190.1	Moc05g22190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding