Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACGAATGCAACTGGAGGAACGTTGCGACGCTACGGAACAAGAGGTAACTAATCTGAAGGAGATGCTCACCAGAGTGAAGGAGCAGGTTCAGATTAACCAGAAGATCCTTGAAACTTACATGGCCAAGATGGATGCACGGCACAAAAGGATTGAGCGCTTCATGGCGCACGGCTCCGTCGAAAAGTCATCAATGATTGAATACAGTCGAGGAGAAAGATCATCGGTAAAAAGGAAGGCGACAATGAAGAAACTCGTATCCTGGAGACTACGGAGACCGAAACTGACTGTAGCAAGTTCGAAAAAGTTGAGATGTCGATTTTCTTGGGCCAGACCTTGAATCGTTGCTATTCCGTGCCGAGTGGTATTTCGAAATACATAAACTAACTGATTCGGAAAAACCAATAGTGTCTGTGATAAGCTTTGACGGAACAACTTTAGCTTGGTATCGGTGGAATGACCATCGATGATGGTTTCTGGATTGGAACGACTTGAAGAAGCGACTATTCCAACGTTTTCTACCCTCTAAACGGGGAAGATAATGTGCCAAAATTATTCGCGATAAAGCAGGAAACCACCGTTGAAGACTATATCGAACGGTTTAAGGCTATGGCAGCGCCGTTACCACAACTCTCCGACGAAGTCCTCGAAGGCGTTTTCCTCAACGGGCTGAAATCGGTGATTAGGGCTGAAGTTTTGGCCATGGAACCTGATGGGTTAGATCAAATTATGCGAAAAGCCCAGTTAGTGGAAGATATTGACCTGGTGTCCAAGGAGATGGAGGGACGGTCATAG
mRNA sequence
ATGGTACGAATGCAACTGGAGGAACGTTGCGACGCTACGGAACAAGAGGTAACTAATCTGAAGGAGATGCTCACCAGAGTGAAGGAGCAGGTTCAGATTAACCAGAAGATCCTTGAAACTTACATGGCCAAGATGGATGCACGGCACAAAAGGATTGAGCGCTTCATGGCGCACGGCTCCGTCGAAAAGTCATCAATGATTGAATACAGTCGAGGAGAAAGATCATCGGTAAAAAGGAAGGCGACAATGAAGAAACTCGTATCCTGGAGACTACGGAGACCGAAACTGACTGTAGCAAGTTCGAAAAAAAGCGACTATTCCAACGTTTTCTACCCTCTAAACGGGGAAGATAATGTGCCAAAATTATTCGCGATAAAGCAGGAAACCACCGTTGAAGACTATATCGAACGGTTTAAGGCTATGGCAGCGCCGTTACCACAACTCTCCGACGAAGTCCTCGAAGGCGTTTTCCTCAACGGGCTGAAATCGGTGATTAGGGCTGAAGTTTTGGCCATGGAACCTGATGGGTTAGATCAAATTATGCGAAAAGCCCAGTTAGTGGAAGATATTGACCTGGTGTCCAAGGAGATGGAGGGACGGTCATAG
Coding sequence (CDS)
ATGGTACGAATGCAACTGGAGGAACGTTGCGACGCTACGGAACAAGAGGTAACTAATCTGAAGGAGATGCTCACCAGAGTGAAGGAGCAGGTTCAGATTAACCAGAAGATCCTTGAAACTTACATGGCCAAGATGGATGCACGGCACAAAAGGATTGAGCGCTTCATGGCGCACGGCTCCGTCGAAAAGTCATCAATGATTGAATACAGTCGAGGAGAAAGATCATCGGTAAAAAGGAAGGCGACAATGAAGAAACTCGTATCCTGGAGACTACGGAGACCGAAACTGACTGTAGCAAGTTCGAAAAAAAGCGACTATTCCAACGTTTTCTACCCTCTAAACGGGGAAGATAATGTGCCAAAATTATTCGCGATAAAGCAGGAAACCACCGTTGAAGACTATATCGAACGGTTTAAGGCTATGGCAGCGCCGTTACCACAACTCTCCGACGAAGTCCTCGAAGGCGTTTTCCTCAACGGGCTGAAATCGGTGATTAGGGCTGAAGTTTTGGCCATGGAACCTGATGGGTTAGATCAAATTATGCGAAAAGCCCAGTTAGTGGAAGATATTGACCTGGTGTCCAAGGAGATGGAGGGACGGTCATAG
Protein sequence
MVRMQLEERCDATEQEVTNLKEMLTRVKEQVQINQKILETYMAKMDARHKRIERFMAHGSVEKSSMIEYSRGERSSVKRKATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEGRS
Homology
BLAST of Moc03g22650 vs. NCBI nr
Match:
XP_022148929.1 (uncharacterized protein LOC111017476 [Momordica charantia])
HSP 1 Score: 98.2 bits (243), Expect = 8.5e-17
Identity = 77/221 (34.84%), Postives = 116/221 (52.49%), Query Frame = 0
Query: 1 MVRMQLEERCDATEQEVTNLKEMLT--RVKEQVQINQKI---LETYMAKMDARHKRIERF 60
M+ +LE RC A E+EVT++K +T +V+EQ ++++I LE++M+++
Sbjct: 1 MMVKELESRCGAMEKEVTDIKGAITVVKVEEQRVMSERIQNMLESFMSEIIGGKTPSISQ 60
Query: 61 MAHGSVEKSSMIE------------YSRGERSSVKR--------KATMKKLVSWRLRRPK 120
+ V+K+ + E Y R + V+ W R +
Sbjct: 61 LGESLVQKNKLTEEATRVVQINDQAYDRNKFKKVEMPIFIVISFDVVALAWYRWHEPRDQ 120
Query: 121 LTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEG 180
T + ++ F +L AIKQE +V +Y E F+A++APLPQLSDEVLE
Sbjct: 121 FTDWDNLRTRSLKRFRKSKEGRQCARLLAIKQEGSVAEYQEAFEALSAPLPQLSDEVLEC 180
Query: 181 VFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKE 197
FLNGL V+R++VLA EP GL+QIM +AQLVEDI +E
Sbjct: 181 TFLNGLDLVVRSKVLATEPQGLEQIMHRAQLVEDIATAVQE 221
BLAST of Moc03g22650 vs. NCBI nr
Match:
XP_022131713.1 (uncharacterized protein LOC111004816 [Momordica charantia])
HSP 1 Score: 85.1 bits (209), Expect = 7.5e-13
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 0
Query: 124 AIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRK 183
AIKQE +VE+Y E F+A++A P L +EVLE +LNGL ++RAEVLA +P GLDQIMR+
Sbjct: 2 AIKQEGSVEEYQEAFEALSATQPHLVEEVLESDYLNGLNPILRAEVLASKPTGLDQIMRR 61
Query: 184 AQLVEDIDLVSKE 197
AQL+ED S+E
Sbjct: 62 AQLIEDQATTSQE 74
BLAST of Moc03g22650 vs. NCBI nr
Match:
XP_031745472.1 (uncharacterized protein K02A2.6-like [Cucumis sativus])
HSP 1 Score: 79.3 bits (194), Expect = 4.1e-11
Identity = 57/196 (29.08%), Postives = 100/196 (51.02%), Query Frame = 0
Query: 1 MVRMQLEERCDATEQEVTNLKEMLTRVKEQV-QINQKILETYMAKMDARHKRIERFMAHG 60
M + Q+EER + TE+E+ +LKEM+ +K+ + ++ ++ E + AK K+ E
Sbjct: 1 MAQRQIEERVEGTEKEIMSLKEMMLEMKKSMDRMTDELRENHGAK-----KKEEAGTTTT 60
Query: 61 SVEKSSMIEYSRGERSSVKRKATMKKLVSWRLRRPKLTVASSKKSDYSNVFYPLNGEDNV 120
S EK + S G+ W RR ++ K + F +
Sbjct: 61 SAEKVKVAVVSFGQEE--------VDWFRWSNRRKRVESWEDLKERMFDFFNDTGQQSLG 120
Query: 121 PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQ 180
+L IKQE + +Y+++F +APLP +++ VL FL GL+ ++AEV++ P L++
Sbjct: 121 ARLIRIKQEGSYSEYVKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEE 180
Query: 181 IMRKAQLVEDIDLVSK 196
M++AQLV D ++ K
Sbjct: 181 CMKEAQLVNDRNIALK 183
BLAST of Moc03g22650 vs. NCBI nr
Match:
KAA0047599.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK08256.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 78.2 bits (191), Expect = 9.1e-11
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0
Query: 121 KLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQI 180
+ AIKQE TVE+Y++RF+ ++APLP+++++VLEG F NGL +IR EV +M GL+ +
Sbjct: 16 RFLAIKQEGTVEEYLQRFEELSAPLPEIAEDVLEGTFTNGLDPIIRIEVFSMRALGLEDM 75
Query: 181 MRKAQLVED 190
M AQL E+
Sbjct: 76 MEAAQLAEE 84
BLAST of Moc03g22650 vs. NCBI nr
Match:
XP_022848903.1 (uncharacterized protein LOC111371244 [Olea europaea var. sylvestris])
HSP 1 Score: 76.6 bits (187), Expect = 2.7e-10
Identity = 55/168 (32.74%), Postives = 84/168 (50.00%), Query Frame = 0
Query: 44 KMDARHKRIERFMAHG--------SVEKSSMI----EYSRGERSSVKRKATMKKLVSWRL 103
+MD R +R+E + HG E+ I + + E ++V + W
Sbjct: 94 RMDGRSRRLEMPVFHGENPDGWLFKAERYFSINHFSNWEKIEAAAVCFEGEALAWYQWED 153
Query: 104 RRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDE 163
R K+ F P N+ K A++QE TV DY F+ +AAPL + ++
Sbjct: 154 GRQTFQRWEDLKAALLLRFRPSQEGTNLEKFLALRQEGTVRDYGRMFEVLAAPLTTVPED 213
Query: 164 VLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEMEG 200
+LEG F+NGLK +IRAEV ++P GLD IM AQ VED + + ++ +G
Sbjct: 214 ILEGNFINGLKPLIRAEVRLLKPRGLDLIMELAQRVEDRNELVRQAQG 261
BLAST of Moc03g22650 vs. ExPASy TrEMBL
Match:
A0A6J1D5H9 (uncharacterized protein LOC111017476 OS=Momordica charantia OX=3673 GN=LOC111017476 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 77/221 (34.84%), Postives = 116/221 (52.49%), Query Frame = 0
Query: 1 MVRMQLEERCDATEQEVTNLKEMLT--RVKEQVQINQKI---LETYMAKMDARHKRIERF 60
M+ +LE RC A E+EVT++K +T +V+EQ ++++I LE++M+++
Sbjct: 1 MMVKELESRCGAMEKEVTDIKGAITVVKVEEQRVMSERIQNMLESFMSEIIGGKTPSISQ 60
Query: 61 MAHGSVEKSSMIE------------YSRGERSSVKR--------KATMKKLVSWRLRRPK 120
+ V+K+ + E Y R + V+ W R +
Sbjct: 61 LGESLVQKNKLTEEATRVVQINDQAYDRNKFKKVEMPIFIVISFDVVALAWYRWHEPRDQ 120
Query: 121 LTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEG 180
T + ++ F +L AIKQE +V +Y E F+A++APLPQLSDEVLE
Sbjct: 121 FTDWDNLRTRSLKRFRKSKEGRQCARLLAIKQEGSVAEYQEAFEALSAPLPQLSDEVLEC 180
Query: 181 VFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKE 197
FLNGL V+R++VLA EP GL+QIM +AQLVEDI +E
Sbjct: 181 TFLNGLDLVVRSKVLATEPQGLEQIMHRAQLVEDIATAVQE 221
BLAST of Moc03g22650 vs. ExPASy TrEMBL
Match:
A0A6J1BU87 (uncharacterized protein LOC111004816 OS=Momordica charantia OX=3673 GN=LOC111004816 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 3.6e-13
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 0
Query: 124 AIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRK 183
AIKQE +VE+Y E F+A++A P L +EVLE +LNGL ++RAEVLA +P GLDQIMR+
Sbjct: 2 AIKQEGSVEEYQEAFEALSATQPHLVEEVLESDYLNGLNPILRAEVLASKPTGLDQIMRR 61
Query: 184 AQLVEDIDLVSKE 197
AQL+ED S+E
Sbjct: 62 AQLIEDQATTSQE 74
BLAST of Moc03g22650 vs. ExPASy TrEMBL
Match:
A0A5D3CD29 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00260 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0
Query: 121 KLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQI 180
+ AIKQE TVE+Y++RF+ ++APLP+++++VLEG F NGL +IR EV +M GL+ +
Sbjct: 16 RFLAIKQEGTVEEYLQRFEELSAPLPEIAEDVLEGTFTNGLDPIIRIEVFSMRALGLEDM 75
Query: 181 MRKAQLVED 190
M AQL E+
Sbjct: 76 MEAAQLAEE 84
BLAST of Moc03g22650 vs. ExPASy TrEMBL
Match:
A0A5D3BUF1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00090 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0
Query: 89 WRLRRPKLTVASSKKSDYSNVFYPLNGEDNVPKLFAIKQETTVEDYIERFKAMAAPLPQL 148
W R + K N F E + AIKQE +V +++++F+ ++APLP++
Sbjct: 110 WTENRKRFRSWKELKERMYNRFQSREHETTCARFLAIKQEGSVSEHLQKFEELSAPLPEM 169
Query: 149 SDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDIDLVSKEME 199
+EVLEG F NGL +I EV +M GL+ +M AQL E LV +++E
Sbjct: 170 VEEVLEGTFANGLDPIILKEVFSMRVVGLEDMMEVAQLAEVAQLVEEKVE 219
BLAST of Moc03g22650 vs. ExPASy TrEMBL
Match:
A0A5A7SLB5 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46346G00030 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 3.7e-10
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 0
Query: 131 VEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQIMRKAQLVEDI 190
V D+ ERF+A++APL LSDEVLE FLNGL I+AEVL+ EP GL QIMR A +ED
Sbjct: 143 VADFRERFEALSAPLSHLSDEVLESTFLNGLDPEIKAEVLSYEPVGLGQIMRAALWIEDK 202
Query: 191 DLVSKEMEGRS 202
+V++ G++
Sbjct: 203 QMVTRSRLGQT 213
BLAST of Moc03g22650 vs. TAIR 10
Match:
AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )
HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 0
Query: 120 PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQ 179
P I+QE +V +Y ERF+A+ L + LE +FL GL+ ++ V ++P+G+ Q
Sbjct: 341 PHYSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKPNGIVQ 400
Query: 180 IMRKAQLVED 190
+M AQ +E+
Sbjct: 401 MMDTAQWLEE 410
BLAST of Moc03g22650 vs. TAIR 10
Match:
AT3G29750.1 (Eukaryotic aspartyl protease family protein )
HSP 1 Score: 42.4 bits (98), Expect = 5.2e-04
Identity = 22/79 (27.85%), Postives = 42/79 (53.16%), Query Frame = 0
Query: 120 PKLFAIKQETTVEDYIERFKAMAAPLPQLSDEVLEGVFLNGLKSVIRAEVLAMEPDGLDQ 179
P I+QE +V DY ERF+A+ L + E +FL GL+ ++ V ++P+G++
Sbjct: 7 PHYSGIQQEGSVRDYRERFEALCLRSVTLPGQGFEEMFLQGLQPSLQTAVRELKPNGINS 66
Query: 180 IMRKAQLVEDIDLVSKEME 199
+ + + LV +++
Sbjct: 67 YQSRQAELMSLTLVQAKLD 85
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022148929.1 | 8.5e-17 | 34.84 | uncharacterized protein LOC111017476 [Momordica charantia] | [more] |
| XP_022131713.1 | 7.5e-13 | 58.90 | uncharacterized protein LOC111004816 [Momordica charantia] | [more] |
| XP_031745472.1 | 4.1e-11 | 29.08 | uncharacterized protein K02A2.6-like [Cucumis sativus] | [more] |
| KAA0047599.1 | 9.1e-11 | 50.72 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK08256.1 ty3-gyp... | [more] |
| XP_022848903.1 | 2.7e-10 | 32.74 | uncharacterized protein LOC111371244 [Olea europaea var. sylvestris] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1D5H9 | 4.1e-17 | 34.84 | uncharacterized protein LOC111017476 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
| A0A6J1BU87 | 3.6e-13 | 58.90 | uncharacterized protein LOC111004816 OS=Momordica charantia OX=3673 GN=LOC111004... | [more] |
| A0A5D3CD29 | 4.4e-11 | 50.72 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3BUF1 | 2.9e-10 | 36.36 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7SLB5 | 3.7e-10 | 54.93 | Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G42723.1 | 1.6e-05 | 35.71 | aminoacyl-tRNA ligases;ATP binding;nucleotide binding | [more] |
| AT3G29750.1 | 5.2e-04 | 27.85 | Eukaryotic aspartyl protease family protein | [more] |
