MS017454 (gene) Bitter gourd (TR) v1

Overview


Name	MS017454
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DBD_Tnp_Mut domain-containing protein
Location	scaffold435: 534095 .. 534302 (+)
RNA-Seq Expression	MS017454
Synteny	MS017454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAAAAAGATTGTGTTTTTCTAAGGAAAGAAGAATTGAAGAAAGCAGTTTACTCTGTAGCCTTAAAGGGTAGTTTTCAGTTCAAAACAGTAAAATCCAACAAAAAACAACAAAAAACAGTTGGTTTTAAAGTGTCTAGACGAATCATGCAATTGGTACCTCCGTTCTTCTCGTTACTTAGATAGCAAAATATGGGCTATTAGGAAA

mRNA sequence

CTGAAAAAAGATTGTGTTTTTCTAAGGAAAGAAGAATTGAAGAAAGCAGTTTACTCTGTAGCCTTAAAGGGTAGTTTTCAGTTCAAAACAGTAAAATCCAACAAAAAAAAAAAACAGTTGGTTTTAAAGTGTCTAGACGAATCATGCAATTGGTACCTCCGTTCTTCTCGTTACTTAGATAGCAAAATATGGGCTATTAGGAAA

Coding sequence (CDS)

CTGAAAAAAGATTGTGTTTTTCTAAGGAAAGAAGAATTGAAGAAAGCAGTTTACTCTGTAGCCTTAAAGGGTAGTTTTCAGTTCAAAACAGTAAAATCCAACAAAAAAAAAAAACAGTTGGTTTTAAAGTGTCTAGACGAATCATGCAATTGGTACCTCCGTTCTTCTCGTTACTTAGATAGCAAAATATGGGCTATTAGGAAA

Protein sequence

LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLDSKIWAIRK

Homology

[Close]

BLAST of MS017454 vs. NCBI nr
Match: KAA0065296.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK++ +F  KE L K+ Y +A+K +F+FKTV+SN   K +  KC  ++C WY+R+SRY  
Sbjct: 153 LKENDMFASKELLSKSFYYIAIKNNFEFKTVRSN--SKSIEFKCSQDNCPWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            K+W +RK
Sbjct: 213 GKLWRLRK 218

[Close]

BLAST of MS017454 vs. NCBI nr
Match: KAA0054854.1 (uncharacterized protein E6C27_scaffold406G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-08
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  K+ L K+ Y +A+K +F+FKTVKSN   K +  KC  ++C+WY+R+SRY  
Sbjct: 153 LKEKDMFASKKLLSKSFYYIAIKNNFEFKTVKSN--SKSIEFKCSQDNCSWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. NCBI nr
Match: TYK22454.1 (uncharacterized protein E5676_scaffold3009G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-08
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  K+ L K+ Y +A+K +F+FKTVKSN   K +  KC  ++C+WY+R+SRY  
Sbjct: 153 LKEKDMFASKKLLSKSFYYIAIKNNFEFKTVKSN--SKSIEFKCSQDNCSWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. NCBI nr
Match: KAA0066702.1 (uncharacterized protein E6C27_scaffold271G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK++ +F  KE L K+ Y +A+K +F+FKTV+SN K  +   KC  ++C WY+R+SRY  
Sbjct: 153 LKENDMFASKELLSKSFYYIAIKNNFEFKTVRSNSKSME--FKCSQDNCPWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. NCBI nr
Match: KAA0059897.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  KE L K+ Y +A+K +F+FKTV+SN   K +  KC  ++C WY+R+SRY  
Sbjct: 153 LKEKDMFANKELLSKSFYYIAIKNNFEFKTVRSN--SKSIEFKCSQDNCPWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. ExPASy TrEMBL
Match: A0A5A7VG38 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00100 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK++ +F  KE L K+ Y +A+K +F+FKTV+SN   K +  KC  ++C WY+R+SRY  
Sbjct: 153 LKENDMFASKELLSKSFYYIAIKNNFEFKTVRSN--SKSIEFKCSQDNCPWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            K+W +RK
Sbjct: 213 GKLWRLRK 218

[Close]

BLAST of MS017454 vs. ExPASy TrEMBL
Match: A0A5D3DFS5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00020 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  K+ L K+ Y +A+K +F+FKTVKSN   K +  KC  ++C+WY+R+SRY  
Sbjct: 153 LKEKDMFASKKLLSKSFYYIAIKNNFEFKTVKSN--SKSIEFKCSQDNCSWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. ExPASy TrEMBL
Match: A0A5A7UI69 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00610 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  K+ L K+ Y +A+K +F+FKTVKSN   K +  KC  ++C+WY+R+SRY  
Sbjct: 153 LKEKDMFASKKLLSKSFYYIAIKNNFEFKTVKSN--SKSIEFKCSQDNCSWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. ExPASy TrEMBL
Match: A0A5A7UZ18 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001920 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-08
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  KE L K+ Y +A+K +F+FKTV+SN   K +  KC  ++C WY+R+SRY  
Sbjct: 153 LKEKDMFANKELLSKSFYYIAIKNNFEFKTVRSN--SKSIEFKCSQDNCPWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

[Close]

BLAST of MS017454 vs. ExPASy TrEMBL
Match: A0A5A7VQ50 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold179G00600 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-08
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   LKKDCVFLRKEELKKAVYSVALKGSFQFKTVKSNKKKKQLVLKCLDESCNWYLRSSRYLD 60
           LK+  +F  KE L K+ Y +A+K +F+FKTV+SN   K +  KC +++C WY+R+SRY  
Sbjct: 153 LKEKEMFASKELLSKSFYYIAIKNNFEFKTVRSN--SKSIEFKCSEDNCPWYVRASRYKG 212

Query: 61  SKIWAIRK 69
            ++W +RK
Sbjct: 213 GELWRLRK 218

The following BLAST results are available for this feature:

BLAST of MS017454 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065296.1	2.4e-08	45.59	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]	[more]
KAA0054854.1	7.1e-08	44.12	uncharacterized protein E6C27_scaffold406G00610 [Cucumis melo var. makuwa]	[more]
TYK22454.1	7.1e-08	44.12	uncharacterized protein E5676_scaffold3009G00020 [Cucumis melo var. makuwa]	[more]
KAA0066702.1	9.3e-08	44.12	uncharacterized protein E6C27_scaffold271G00350 [Cucumis melo var. makuwa]	[more]
KAA0059897.1	9.3e-08	44.12	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]	[more]

BLAST of MS017454 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG38	1.2e-08	45.59	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DFS5	3.4e-08	44.12	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UI69	3.4e-08	44.12	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7UZ18	4.5e-08	44.12	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VQ50	4.5e-08	44.12	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of MS017454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 6..66 e-value: 7.9E-9 score: 35.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017454.1	MS017454.1	mRNA