MS012288 (gene) Bitter gourd (TR) v1

Overview


Name	MS012288
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	scaffold797: 1223138 .. 1225562 (-)
RNA-Seq Expression	MS012288
Synteny	MS012288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTATGAACCCTTTTGATCTCTTGGTCGACGACGACAACGAGGACCCTAATCAGCTCGCTTCTGCTCAGCGGTCTGCGCCGTCGCCGCCGTCTAAGAAAGCCCCTGCTCTGGCTCAGCCCGCCAAACCGGCGGCTAAGCTTCCTTCCAAGCCGCTTCCTCCGGCTCAGGCTGGTGGGTTTTGTTACTTGATTTATACTTTTGTTTTTCATATTTTATGATTCGTTTTCCCTGTGAAGTAGTAAGAAACGCTGAGCGTTTCAATCAATCTGTATATGAATTTTCTGTCCTTATGATGTTTGCCTTTTTTGGTTTTTGTTTTGCTTTGTTGTTATTACTCTAGATGTTGGGTTTGTTTTGCAATGTCTTAATAATGTTTGAAAGGATGTATTGTGAAGTTTCCTCTGTAGTTCTTTTGTTTGTTATTTATTCTTCTTGAATGGAACTGGTTTCCTATGTATTGCAAAGCTGACTCTTGTCTAGAGGTTGGAGGTTAAGTCACCCATCCCCATATTTGTTGTTTGGTGTACTCGAAAAGGAAAAATAAGAATACGTACCCCTAAAGTGGTATTCATACAAGAAGTTAATATTGCAGTTTCTCAATTAGTGAGAAGTTTATAATTATGGTGTTAGCTGATGAAGTAGGAACTACACGAATGTTATCTTGTTGAACTTTTTTCTCCAATGTAATGTAGTTTTGGGCATTATTTCTGTTTTAATTTTATATATGATCAGTGAGGGAGGCAAGGAACGAAAATAGCCGTGGTCGCGGAGGTGGACGTGGATTTGGACGAGGACGTGGTGGCGGTGGTGGATTTAATAGGGACTCAGCGAATAATGAAAGCAATGCACCAGGTGGCAAGAACGGATTCTCTGATCGTTATCTGCCTCCTGAGGAAGGTGAAAAGGGTGAAAAGCGTGGGTATGGTGGTCCTCGTGGCTCTTTCCGAGGTCCTCGTCGTGGTGGCTTCAGCAATGGGGAAGCAGAAGAAGGGGAACATCCCCGAAGAATGTTTGATCGTCGCAGTGGAACTGGACGTGGGTTAGTTATTCTTTATTTATATAACTAGTTTCCAGTTTGATCATCTGCCTGGCAATTTGTTTTTGTATTTTATCTTACATTGTGGTTGTTTTAATTGTTTTAGAAATGAGTTTAAGCGGGATGGGGGTGGTCGTAGGAACTGGGGAGCTCCTGGTGATGAAATTGCCCCGTAAGTTTTAATTTTCCACTTGCAACATGTTTCTTGATTTGTTGGAATTGTACTATTTGAACTCATACAGGGTCTTCAATTCCTGTTAAGCTCACCACCACCTCTTATTTACTTGACTTGTGAATCTTAAGGGATGTGGAAGAGCCTGTTGCTGAAAATGAGAAGAATGTTGCTCCGGAGCAACAATTGGGAGAGGATGTGGTGAATGATGAGAACAAAGAGGATGCTGCAAAGGAGCCAGAAGAGAAGGAGCCCGAGGATAAGGTAAGTGTTCTTATTTGCAGTATCGATACATTGATTAGTCTATTCTTATAAAAGAAGATACATTGTATTGGTTAACCTATCATATCAACTGGCTATATAATCTCAAATCTGTTCCACTGTCATCTTACAGGAGATGACCCTCAAAGAGTATGAAAAGCTCCGTGAAGAGAACAGGAAACTTTTGGCAAAGACTGAGGTGAGGAAGGCTGAGGTGGATGAGGAGTTAGAGAACATGCAGCAGCTTTCTTGCAAGAAAAGCAATGATGAAATATTTGCCAAATTGGTGAGTGTTTCTATCATGTTACTTCAACGATTCTTTTTTTGTGTTTTTCTTTGGTAGTCCGACCTTAAAAATTTTATTGTCAGGGTGGTGATAAGGATAAGCGCAAAGATAATGCTGACAAGGAAGAGAAAGCTAAGAAAGTATGTATTACTTTTCAGGAACTCATTATTCTGTGGTCTTTATGAAATTATATATTATGAATTAACCAGAAATATTATTTTTTTTGTTGGTATGCAACTTTGAAAGTGTTGATTCAATCCATCTCTCTTTCACCTGTTGGTTCTTGATGTACTTTGCGGCGTCGAGTTATTTTCAGTTTTCTTATATAGTATATATAAGTACCCAGTCTGTTATTTGTAAGATGTTTCTACCATTGCTGTATTTTAATATCAGGTCCATTTTTGCGAAATATCTTCCACCCACATTCTTTCTACACTTCCTTTTATATAGCTGATCTAATTTATTTGTTTTTGGCTATAGTCTGTGACCATAACTGAGTTCCTAAAGCCTGCTGAGGGTGAGAGGTACTATAACCCTGGCGGTCGTGGTAGAGGCCGTGGGCGAGGAGGCTCAAGAGGTGGCTTCAACAATGGTAGCAACAGAATCAATGTCTCAGCCCCCTCCATTGAAGATCCCGGGCAGTTCCCTTCATTGAGTGCTAAG

mRNA sequence

ATGGCAACTATGAACCCTTTTGATCTCTTGGTCGACGACGACAACGAGGACCCTAATCAGCTCGCTTCTGCTCAGCGGTCTGCGCCGTCGCCGCCGTCTAAGAAAGCCCCTGCTCTGGCTCAGCCCGCCAAACCGGCGGCTAAGCTTCCTTCCAAGCCGCTTCCTCCGGCTCAGGCTGTGAGGGAGGCAAGGAACGAAAATAGCCGTGGTCGCGGAGGTGGACGTGGATTTGGACGAGGACGTGGTGGCGGTGGTGGATTTAATAGGGACTCAGCGAATAATGAAAGCAATGCACCAGGTGGCAAGAACGGATTCTCTGATCGTTATCTGCCTCCTGAGGAAGGTGAAAAGGGTGAAAAGCGTGGGTATGGTGGTCCTCGTGGCTCTTTCCGAGGTCCTCGTCGTGGTGGCTTCAGCAATGGGGAAGCAGAAGAAGGGGAACATCCCCGAAGAATGTTTGATCGTCGCAGTGGAACTGGACGTGGAAATGAGTTTAAGCGGGATGGGGGTGGTCGTAGGAACTGGGGAGCTCCTGGTGATGAAATTGCCCCGGATGTGGAAGAGCCTGTTGCTGAAAATGAGAAGAATGTTGCTCCGGAGCAACAATTGGGAGAGGATGTGGTGAATGATGAGAACAAAGAGGATGCTGCAAAGGAGCCAGAAGAGAAGGAGCCCGAGGATAAGGAGATGACCCTCAAAGAGTATGAAAAGCTCCGTGAAGAGAACAGGAAACTTTTGGCAAAGACTGAGGTGAGGAAGGCTGAGGTGGATGAGGAGTTAGAGAACATGCAGCAGCTTTCTTGCAAGAAAAGCAATGATGAAATATTTGCCAAATTGGGTGGTGATAAGGATAAGCGCAAAGATAATGCTGACAAGGAAGAGAAAGCTAAGAAATCTGTGACCATAACTGAGTTCCTAAAGCCTGCTGAGGGTGAGAGGTACTATAACCCTGGCGGTCGTGGTAGAGGCCGTGGGCGAGGAGGCTCAAGAGGTGGCTTCAACAATGGTAGCAACAGAATCAATGTCTCAGCCCCCTCCATTGAAGATCCCGGGCAGTTCCCTTCATTGAGTGCTAAG

Coding sequence (CDS)

ATGGCAACTATGAACCCTTTTGATCTCTTGGTCGACGACGACAACGAGGACCCTAATCAGCTCGCTTCTGCTCAGCGGTCTGCGCCGTCGCCGCCGTCTAAGAAAGCCCCTGCTCTGGCTCAGCCCGCCAAACCGGCGGCTAAGCTTCCTTCCAAGCCGCTTCCTCCGGCTCAGGCTGTGAGGGAGGCAAGGAACGAAAATAGCCGTGGTCGCGGAGGTGGACGTGGATTTGGACGAGGACGTGGTGGCGGTGGTGGATTTAATAGGGACTCAGCGAATAATGAAAGCAATGCACCAGGTGGCAAGAACGGATTCTCTGATCGTTATCTGCCTCCTGAGGAAGGTGAAAAGGGTGAAAAGCGTGGGTATGGTGGTCCTCGTGGCTCTTTCCGAGGTCCTCGTCGTGGTGGCTTCAGCAATGGGGAAGCAGAAGAAGGGGAACATCCCCGAAGAATGTTTGATCGTCGCAGTGGAACTGGACGTGGAAATGAGTTTAAGCGGGATGGGGGTGGTCGTAGGAACTGGGGAGCTCCTGGTGATGAAATTGCCCCGGATGTGGAAGAGCCTGTTGCTGAAAATGAGAAGAATGTTGCTCCGGAGCAACAATTGGGAGAGGATGTGGTGAATGATGAGAACAAAGAGGATGCTGCAAAGGAGCCAGAAGAGAAGGAGCCCGAGGATAAGGAGATGACCCTCAAAGAGTATGAAAAGCTCCGTGAAGAGAACAGGAAACTTTTGGCAAAGACTGAGGTGAGGAAGGCTGAGGTGGATGAGGAGTTAGAGAACATGCAGCAGCTTTCTTGCAAGAAAAGCAATGATGAAATATTTGCCAAATTGGGTGGTGATAAGGATAAGCGCAAAGATAATGCTGACAAGGAAGAGAAAGCTAAGAAATCTGTGACCATAACTGAGTTCCTAAAGCCTGCTGAGGGTGAGAGGTACTATAACCCTGGCGGTCGTGGTAGAGGCCGTGGGCGAGGAGGCTCAAGAGGTGGCTTCAACAATGGTAGCAACAGAATCAATGTCTCAGCCCCCTCCATTGAAGATCCCGGGCAGTTCCCTTCATTGAGTGCTAAG

Protein sequence

MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAVREARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEKRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGDEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLREENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK

Homology

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BLAST of MS012288 vs. NCBI nr
Match: XP_022159516.1 (RGG repeats nuclear RNA binding protein A-like [Momordica charantia])

HSP 1 Score: 664.1 bits (1712), Expect = 6.9e-187
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK 120
           REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK
Sbjct: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK 120

Query: 121 RGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGD 180
           RGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGD
Sbjct: 121 RGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGD 180

Query: 181 EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE 240
           EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE
Sbjct: 181 EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE 240

Query: 241 ENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSV 300
           ENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSV
Sbjct: 241 ENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSV 300

Query: 301 TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK 360
           TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK
Sbjct: 301 TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK 359

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BLAST of MS012288 vs. NCBI nr
Match: XP_022931786.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 563.9 bits (1452), Expect = 9.8e-157
Identity = 324/366 (88.52%), Postives = 339/366 (92.62%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAPALAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKP-ANLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120

Query: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EEGE PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 RRGYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240
           DEIAPDVEEPVAENEKNVAPEQQLGED VV+D NKE+A KE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKL 240

Query: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD ADKEEKAKK
Sbjct: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV----SAPSIEDPGQFP 360
           SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNR+NV    +APSIED GQFP
Sbjct: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFP 360

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BLAST of MS012288 vs. NCBI nr
Match: KAG6571794.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 563.5 bits (1451), Expect = 1.3e-156
Identity = 324/367 (88.28%), Postives = 339/367 (92.37%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAPALAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKP-ANLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120

Query: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EEGE PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 RRGYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240
           DEIAPDVEEPVAENEKNVAPEQQLGED VV+D NKE+A KE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKL 240

Query: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD ADKEEKAKK
Sbjct: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV-----SAPSIEDPGQF 360
           SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNR+NV     +APSIED GQF
Sbjct: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAAPSIEDQGQF 360

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BLAST of MS012288 vs. NCBI nr
Match: XP_023554179.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 560.5 bits (1443), Expect = 1.1e-155
Identity = 322/366 (87.98%), Postives = 338/366 (92.35%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAP+LAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPSLAQPAKP-ANLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120

Query: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EEGE PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 RRGYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240
           DEIAPDVEEPVAENEKNVAPEQQLGED  V+D NKE+AAKE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDGAVDDNNKEEAAKEAEEKEPEDKEMTLKEYEKL 240

Query: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD ADKEEKAKK
Sbjct: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV----SAPSIEDPGQFP 360
           SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNR+ V    +APSIED GQFP
Sbjct: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMTVAAAAAAPSIEDQGQFP 360

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BLAST of MS012288 vs. NCBI nr
Match: XP_022971841.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita maxima])

HSP 1 Score: 556.6 bits (1433), Expect = 1.6e-154
Identity = 320/365 (87.67%), Postives = 335/365 (91.78%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAPALAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKP-ANLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120

Query: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EE E PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 RRGYGGPRGSFRGPRRGGFSNGETEEAEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240
           DEIAPDVE PVAENEKNVAPEQQLGED VV+D NKE+A KE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEAPVAENEKNVAPEQQLGEDGVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKL 240

Query: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD  DKEEKAKK
Sbjct: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIVDKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV---SAPSIEDPGQFPS 360
           SVTITEFLKP EGERYYNPGGRGRGRGRGGSRGGFNNGSNR+NV   +APSIED GQFPS
Sbjct: 301 SVTITEFLKPTEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAPSIEDQGQFPS 360

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BLAST of MS012288 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.8e-74
Identity = 218/378 (57.67%), Postives = 252/378 (66.67%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQ-PAKPAAKLPSKPLPPAQA 60
           MAT+NPFDLL DDD EDP+QLA A        SKK+  ++  PAK A KLPSKPLPPAQA
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDK--SKKSGQVSSLPAKSAPKLPSKPLPPAQA 60

Query: 61  VREARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPE-EGEKG 120
           VREAR++  RG GG  GF RGR   GG+NRD          G NG+S  Y  P  EG+  
Sbjct: 61  VREARSDAPRGGGGRGGFNRGR---GGYNRDD---------GNNGYSGGYTKPSGEGDVS 120

Query: 121 ----EKRGYGG-PRGSFRGP-------RRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFK 180
               E+RG GG PRGSFRG        RRGGFSN E  +GE PRR F+RRSGTGRG++FK
Sbjct: 121 KSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFK 180

Query: 181 RDGGGRRNWGAPGDEIAPDVEEPV-AENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEP 240
           RDG GR NWG PG+EIA + E     E EK+V  E+   +DV  D NKED     EEKEP
Sbjct: 181 RDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEP 240

Query: 241 EDKEMTLKEYEKLREENRKLLAKTEVRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGGDKD 300
           EDKEMTL EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLG DKD
Sbjct: 241 EDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKD 300

Query: 301 KRKDNADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGG-SRGGFNNGSN--RIN 360
           KRKD  DKEEKAKK+V+I EFLKPAEG  YY  GGRG GRGRGG  RGG ++G +    N
Sbjct: 301 KRKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRN 355

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BLAST of MS012288 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 6.5e-71
Identity = 182/302 (60.26%), Postives = 216/302 (71.52%), Query Frame = 0


Query: 70  GRGGGRGFGRGR--GGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGE----KRGY 129
           GRGG RG GRGR  G G GFN++SA++E NA G  NGFS RY   E+GE G+    + GY
Sbjct: 4   GRGGPRGGGRGRGPGRGRGFNQESADDE-NAFGSNNGFSGRYRVQEDGESGKLSERRGGY 63

Query: 130 GGPRGSFRGPRRGGFSNGEAE--EGEHPRRMFDRRSGTGRGNEF-KRDGGGRRNWGAPGD 189
           GGPRG F G RRGGF+NG+A   EGE PRR+FDRRSGTGRGNE+ KR+G GR NWG P D
Sbjct: 64  GGPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPAD 123

Query: 190 EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE 249
           +IA + E PV + EK V  E++ G++   D NK+  A EPEEKEPE+KEMTL+EYEKL E
Sbjct: 124 DIAQETEVPVNDGEKIVEAEKEAGQEEAEDTNKDSTAAEPEEKEPEEKEMTLEEYEKLME 183

Query: 250 ENRK--LLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 309
           E RK  L  K E RK  +D+ELE+MQ LS KK++DEIF KLG +K+KRK+     EKA+K
Sbjct: 184 EKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAV---EKARK 243

Query: 310 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNG-SNRINVSAPSIEDPGQFPSLS 360
           + +I EFLKPAEGE Y   GGRGRG GRG  RGGF  G     + SAPSIED GQFPSL 
Sbjct: 244 TQSINEFLKPAEGENYSRRGGRGRGPGRG--RGGFGGGVGGNKSFSAPSIEDVGQFPSLV 299

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BLAST of MS012288 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-64
Identity = 195/368 (52.99%), Postives = 236/368 (64.13%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MA++NPFDLL  DD EDP+QLA A     S   +KA A  QP K AAK P+KP PP+QAV
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAVAL----SQKVEKAAAAVQPPK-AAKFPTKPAPPSQAV 60

Query: 61  REARNENSRGRG--GGR-GFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEK 120
           RE+RN    GRG  GGR GF RGR G GG+NRD+ NN+  APG +NGFS  Y  P E   
Sbjct: 61  RESRNAPQGGRGGTGGRGGFSRGR-GNGGYNRDNRNND--APGNENGFSGGYRRPSEDAD 120

Query: 121 GEKRG--YGGPR--GSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRR 180
           G  RG   GG R  G   GPRRGG +NGE+ + E P R +DR S TG G   KR+GGGR 
Sbjct: 121 GASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRG 180

Query: 181 NWGAPGDEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPED---KEM 240
           NWG   D+I P  EEP  E EK+   E+Q GED   +  KE  A+E  +KE E+   +EM
Sbjct: 181 NWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEAREM 240

Query: 241 TLKEYEKLREENRKLLAKTEVRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGGDKDKRKD 300
           TL+EYEK+ EE +K L  T+V + +VD ++ E+MQQLS KK+ D EIF KLG DK+KRK 
Sbjct: 241 TLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRK- 300

Query: 301 NADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIE 357
             D  EKAKKS++I EFLKPA+G+RY   GG  RGRG  G RG   N       +AP+I 
Sbjct: 301 --DATEKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEAAAPAIG 356

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BLAST of MS012288 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.0e-60
Identity = 184/375 (49.07%), Postives = 231/375 (61.60%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MA++NPFDLL DDD EDP+Q+ +++         K  A  Q AK + K+P+KP PP+QAV
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK-------PLKVVAPVQTAK-SGKMPTKPPPPSQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK 120
           REARN    GRG GRG   GRGG GG NRDS NN+   P  +NG+   Y   EEG+ G +
Sbjct: 61  REARNAPGGGRGAGRGGSYGRGGRGGNNRDSRNND--GPANENGYGGGYRRSEEGD-GAR 120

Query: 121 RGYGGPRGSFRGPRRGGFSN-GEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           R  GGP G +RG RRG +SN G++ + E PR+ +DR S T  GNE KRDG GR NWG   
Sbjct: 121 R--GGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQ 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLR 240
           D+I P  EE  A  +KN+  E+Q GE    D   E  A++ EEK PEDKEMTL+EYEK+ 
Sbjct: 181 DDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEEK-PEDKEMTLEEYEKVL 240

Query: 241 EENRKLLAKTEVRKAEVD-EELENMQQLSCKKS-NDEIFAKLGGDKDKRKDNADKEEKAK 300
           EE +K L  T+V + +VD +  E MQQLS KKS NDE+F KLG +KDKR    ++EEK +
Sbjct: 241 EEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTR 300

Query: 301 KSVTITEFLKPAEGERYYNP-----GGR-GRGRGRGGSRGGFNN----------GSNRIN 357
           KS++I EFLKPA+G+ YY P     GGR GRG   G  R G  N          G     
Sbjct: 301 KSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQ 358

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BLAST of MS012288 vs. ExPASy TrEMBL
Match: A0A6J1E459 (RGG repeats nuclear RNA binding protein A-like OS=Momordica charantia OX=3673 GN=LOC111025910 PE=4 SV=1)

HSP 1 Score: 664.1 bits (1712), Expect = 3.4e-187
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK 120
           REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK
Sbjct: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK 120

Query: 121 RGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGD 180
           RGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGD
Sbjct: 121 RGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPGD 180

Query: 181 EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE 240
           EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE
Sbjct: 181 EIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLRE 240

Query: 241 ENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSV 300
           ENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSV
Sbjct: 241 ENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKKSV 300

Query: 301 TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK 360
           TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK
Sbjct: 301 TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSLSAK 359

[Close]

BLAST of MS012288 vs. ExPASy TrEMBL
Match: A0A6J1EUM3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111438060 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 4.7e-157
Identity = 324/366 (88.52%), Postives = 339/366 (92.62%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAPALAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKP-ANLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120

Query: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EEGE PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 RRGYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240
           DEIAPDVEEPVAENEKNVAPEQQLGED VV+D NKE+A KE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKL 240

Query: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD ADKEEKAKK
Sbjct: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV----SAPSIEDPGQFP 360
           SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNR+NV    +APSIED GQFP
Sbjct: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFP 360

[Close]

BLAST of MS012288 vs. ExPASy TrEMBL
Match: A0A6J1I4B3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111470534 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 7.6e-155
Identity = 320/365 (87.67%), Postives = 335/365 (91.78%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAPALAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKP-ANLPSKPLPPAQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120

Query: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EE E PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 RRGYGGPRGSFRGPRRGGFSNGETEEAEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240
           DEIAPDVE PVAENEKNVAPEQQLGED VV+D NKE+A KE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEAPVAENEKNVAPEQQLGEDGVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKL 240

Query: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD  DKEEKAKK
Sbjct: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIVDKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV---SAPSIEDPGQFPS 360
           SVTITEFLKP EGERYYNPGGRGRGRGRGGSRGGFNNGSNR+NV   +APSIED GQFPS
Sbjct: 301 SVTITEFLKPTEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAPSIEDQGQFPS 360

[Close]

BLAST of MS012288 vs. ExPASy TrEMBL
Match: A0A1S3CPW2 (plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103503456 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 7.6e-155
Identity = 321/363 (88.43%), Postives = 339/363 (93.39%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQLASAQRSAP+ PSKKAPA AQPAKP AKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPALPSKKAPAPAQPAKP-AKLPSKPLPPAQAV 60

Query: 61  REARNENSR-GRGGGRGFGRGR-GGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEK- 120
           RE++NENSR GRGGGRGFGRGR GGGGGFNRDSANNE++   G+NGFSDRY  PE+GEK 
Sbjct: 61  RESKNENSRGGRGGGRGFGRGRGGGGGGFNRDSANNENS---GRNGFSDRYQTPEDGEKA 120

Query: 121 GEKRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGA 180
            E+RGYG PRGSFRGPRRGGFSNGEAEEGE PRR+++RRSGTGRGNEFKRDG GRRNWGA
Sbjct: 121 AERRGYGAPRGSFRGPRRGGFSNGEAEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGA 180

Query: 181 PGDEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENK-EDAAKEPEEKEPEDKEMTLKEYE 240
           PGDE APDVEEPVAENEKNVAPEQQLGED V+D NK E+A KEPEEKEPEDKEMTLKEYE
Sbjct: 181 PGDENAPDVEEPVAENEKNVAPEQQLGEDGVDDNNKAEEAVKEPEEKEPEDKEMTLKEYE 240

Query: 241 KLREENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKA 300
           KLREE+RKLLAKTEVRKAEVDEELENMQQLS KK+NDEIFAKLG DKDKRKD ADKEE+A
Sbjct: 241 KLREESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDVADKEERA 300

Query: 301 KKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSL 360
           KKSVTITEFLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNR+NV+APSIEDPGQFPSL
Sbjct: 301 KKSVTITEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNVAAPSIEDPGQFPSL 358

[Close]

BLAST of MS012288 vs. ExPASy TrEMBL
Match: A0A0A0LKF6 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914560 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 318/363 (87.60%), Postives = 336/363 (92.56%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQLASA RSAP  PSKKAPA AQPAKP AKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAHRSAPVLPSKKAPAPAQPAKP-AKLPSKPLPPAQAV 60

Query: 61  REARNENSR-GRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEK-G 120
           RE++N+N R GRGGGRGFGRGRGGGGGFNRDSANNE+   GG+NGFSDRY  PE+GEK  
Sbjct: 61  RESKNDNGRGGRGGGRGFGRGRGGGGGFNRDSANNEN---GGRNGFSDRYQTPEDGEKAA 120

Query: 121 EKRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAP 180
           E+RGYG PRGSFRGPRR GFSNGEAEEGE PRR+++RRSGTGRGNEFKR+G GRRNWGAP
Sbjct: 121 ERRGYGAPRGSFRGPRRAGFSNGEAEEGERPRRVYERRSGTGRGNEFKREGAGRRNWGAP 180

Query: 181 GDEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENK-EDAAKEPEEKEPEDKEMTLKEYE 240
           GDE APDVEEPVAENEKNVAPEQQLGED VV+D NK E+A KEPEEKEPEDKEMTLKEYE
Sbjct: 181 GDENAPDVEEPVAENEKNVAPEQQLGEDGVVDDNNKTEEAVKEPEEKEPEDKEMTLKEYE 240

Query: 241 KLREENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKA 300
           KLREE+RKLLAKTEVRKAEVDEELENMQQLS KK+NDEIFAKLG DKDKRKD ADKEE+A
Sbjct: 241 KLREESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDAADKEERA 300

Query: 301 KKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIEDPGQFPSL 360
           KKSVTITEFLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNR+NV+APSIEDPGQFPSL
Sbjct: 301 KKSVTITEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNVAAPSIEDPGQFPSL 358

[Close]

BLAST of MS012288 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-75
Identity = 218/378 (57.67%), Postives = 252/378 (66.67%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQ-PAKPAAKLPSKPLPPAQA 60
           MAT+NPFDLL DDD EDP+QLA A        SKK+  ++  PAK A KLPSKPLPPAQA
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDK--SKKSGQVSSLPAKSAPKLPSKPLPPAQA 60

Query: 61  VREARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPE-EGEKG 120
           VREAR++  RG GG  GF RGR   GG+NRD          G NG+S  Y  P  EG+  
Sbjct: 61  VREARSDAPRGGGGRGGFNRGR---GGYNRDD---------GNNGYSGGYTKPSGEGDVS 120

Query: 121 ----EKRGYGG-PRGSFRGP-------RRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFK 180
               E+RG GG PRGSFRG        RRGGFSN E  +GE PRR F+RRSGTGRG++FK
Sbjct: 121 KSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFK 180

Query: 181 RDGGGRRNWGAPGDEIAPDVEEPV-AENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEP 240
           RDG GR NWG PG+EIA + E     E EK+V  E+   +DV  D NKED     EEKEP
Sbjct: 181 RDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEP 240

Query: 241 EDKEMTLKEYEKLREENRKLLAKTEVRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGGDKD 300
           EDKEMTL EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLG DKD
Sbjct: 241 EDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKD 300

Query: 301 KRKDNADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGG-SRGGFNNGSN--RIN 360
           KRKD  DKEEKAKK+V+I EFLKPAEG  YY  GGRG GRGRGG  RGG ++G +    N
Sbjct: 301 KRKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRN 355

[Close]

BLAST of MS012288 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 248.4 bits (633), Expect = 8.5e-66
Identity = 195/368 (52.99%), Postives = 236/368 (64.13%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MA++NPFDLL  DD EDP+QLA A     S   +KA A  QP K AAK P+KP PP+QAV
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAVAL----SQKVEKAAAAVQPPK-AAKFPTKPAPPSQAV 60

Query: 61  REARNENSRGRG--GGR-GFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEK 120
           RE+RN    GRG  GGR GF RGR G GG+NRD+ NN+  APG +NGFS  Y  P E   
Sbjct: 61  RESRNAPQGGRGGTGGRGGFSRGR-GNGGYNRDNRNND--APGNENGFSGGYRRPSEDAD 120

Query: 121 GEKRG--YGGPR--GSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRR 180
           G  RG   GG R  G   GPRRGG +NGE+ + E P R +DR S TG G   KR+GGGR 
Sbjct: 121 GASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRG 180

Query: 181 NWGAPGDEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPED---KEM 240
           NWG   D+I P  EEP  E EK+   E+Q GED   +  KE  A+E  +KE E+   +EM
Sbjct: 181 NWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEAREM 240

Query: 241 TLKEYEKLREENRKLLAKTEVRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGGDKDKRKD 300
           TL+EYEK+ EE +K L  T+V + +VD ++ E+MQQLS KK+ D EIF KLG DK+KRK 
Sbjct: 241 TLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRK- 300

Query: 301 NADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINVSAPSIE 357
             D  EKAKKS++I EFLKPA+G+RY   GG  RGRG  G RG   N       +AP+I 
Sbjct: 301 --DATEKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEAAAPAIG 356

[Close]

BLAST of MS012288 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 233.4 bits (594), Expect = 2.8e-61
Identity = 184/375 (49.07%), Postives = 231/375 (61.60%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MA++NPFDLL DDD EDP+Q+ +++         K  A  Q AK + K+P+KP PP+QAV
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK-------PLKVVAPVQTAK-SGKMPTKPPPPSQAV 60

Query: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKGEK 120
           REARN    GRG GRG   GRGG GG NRDS NN+   P  +NG+   Y   EEG+ G +
Sbjct: 61  REARNAPGGGRGAGRGGSYGRGGRGGNNRDSRNND--GPANENGYGGGYRRSEEGD-GAR 120

Query: 121 RGYGGPRGSFRGPRRGGFSN-GEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180
           R  GGP G +RG RRG +SN G++ + E PR+ +DR S T  GNE KRDG GR NWG   
Sbjct: 121 R--GGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQ 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPEDKEMTLKEYEKLR 240
           D+I P  EE  A  +KN+  E+Q GE    D   E  A++ EEK PEDKEMTL+EYEK+ 
Sbjct: 181 DDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEEK-PEDKEMTLEEYEKVL 240

Query: 241 EENRKLLAKTEVRKAEVD-EELENMQQLSCKKS-NDEIFAKLGGDKDKRKDNADKEEKAK 300
           EE +K L  T+V + +VD +  E MQQLS KKS NDE+F KLG +KDKR    ++EEK +
Sbjct: 241 EEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTR 300

Query: 301 KSVTITEFLKPAEGERYYNP-----GGR-GRGRGRGGSRGGFNN----------GSNRIN 357
           KS++I EFLKPA+G+ YY P     GGR GRG   G  R G  N          G     
Sbjct: 301 KSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQ 358

[Close]

BLAST of MS012288 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 231.9 bits (590), Expect = 8.2e-61
Identity = 180/318 (56.60%), Postives = 209/318 (65.72%), Query Frame = 0


Query: 60  VREARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPE-EGEKG 119
           VREAR++  RG GG  GF RGR   GG+NRD          G NG+S  Y  P  EG+  
Sbjct: 48  VREARSDAPRGGGGRGGFNRGR---GGYNRDD---------GNNGYSGGYTKPSGEGDVS 107

Query: 120 ----EKRGYGG-PRGSFRGP-------RRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFK 179
               E+RG GG PRGSFRG        RRGGFSN E  +GE PRR F+RRSGTGRG++FK
Sbjct: 108 KSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFK 167

Query: 180 RDGGGRRNWGAPGDEIAPDVEEPV-AENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEP 239
           RDG GR NWG PG+EIA + E     E EK+V  E+   +DV  D NKED     EEKEP
Sbjct: 168 RDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEP 227

Query: 240 EDKEMTLKEYEKLREENRKLLAKTEVRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGGDKD 299
           EDKEMTL EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLG DKD
Sbjct: 228 EDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKD 287

Query: 300 KRKDNADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGG-SRGGFNNGSN--RIN 359
           KRKD  DKEEKAKK+V+I EFLKPAEG  YY  GGRG GRGRGG  RGG ++G +    N
Sbjct: 288 KRKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRN 345

[Close]

BLAST of MS012288 vs. TAIR 10
Match: AT5G47210.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 202.6 bits (514), Expect = 5.3e-52
Identity = 162/307 (52.77%), Postives = 199/307 (64.82%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60
           MA++NPFDLL  DD EDP+QLA A     S   +KA A  QP K AAK P+KP PP+QAV
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAVAL----SQKVEKAAAAVQPPK-AAKFPTKPAPPSQAV 60

Query: 61  REARNENSRGRG--GGR-GFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEK 120
           RE+RN    GRG  GGR GF RGR G GG+NRD+ NN+  APG +NGFS  Y  P E   
Sbjct: 61  RESRNAPQGGRGGTGGRGGFSRGR-GNGGYNRDNRNND--APGNENGFSGGYRRPSEDAD 120

Query: 121 GEKRG--YGGPR--GSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRR 180
           G  RG   GG R  G   GPRRGG +NGE+ + E P R +DR S TG G   KR+GGGR 
Sbjct: 121 GASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRG 180

Query: 181 NWGAPGDEIAPDVEEPVAENEKNVAPEQQLGEDVVNDENKEDAAKEPEEKEPED---KEM 240
           NWG   D+I P  EEP  E EK+   E+Q GED   +  KE  A+E  +KE E+   +EM
Sbjct: 181 NWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEAREM 240

Query: 241 TLKEYEKLREENRKLLAKTEVRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGGDKDKRKD 296
           TL+EYEK+ EE +K L  T+V + +VD ++ E+MQQLS KK+ D EIF KLG DK+KRKD
Sbjct: 241 TLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKD 298

The following BLAST results are available for this feature:

BLAST of MS012288 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159516.1	6.9e-187	100.00	RGG repeats nuclear RNA binding protein A-like [Momordica charantia]	[more]
XP_022931786.1	9.8e-157	88.52	RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata]	[more]
KAG6571794.1	1.3e-156	88.28	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
XP_023554179.1	1.1e-155	87.98	RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971841.1	1.6e-154	87.67	RGG repeats nuclear RNA binding protein A-like [Cucurbita maxima]	[more]

BLAST of MS012288 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	2.8e-74	57.67	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	6.5e-71	60.26	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
Q9LVT8	1.2e-64	52.99	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
O23593	4.0e-60	49.07	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of MS012288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E459	3.4e-187	100.00	RGG repeats nuclear RNA binding protein A-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1EUM3	4.7e-157	88.52	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I4B3	7.6e-155	87.67	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3CPW2	7.6e-155	88.43	plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=36...	[more]
A0A0A0LKF6	2.4e-153	87.60	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914...	[more]

BLAST of MS012288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	2.0e-75	57.67	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	8.5e-66	52.99	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	2.8e-61	49.07	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	8.2e-61	56.60	Hyaluronan / mRNA binding family	[more]
AT5G47210.3	5.3e-52	52.77	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..266
None	No IPR available	GENE3D	6.10.140.1040		coord: 147..258 e-value: 1.1E-8 score: 37.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..301
None	No IPR available	PANTHER	PTHR12299:SF64	PLASMINOGEN ACTIVATOR INHIBITOR 1 RNA-BINDING PROTEIN-LIKE	coord: 1..359
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 149..257 e-value: 4.9E-36 score: 135.7
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 149..256 e-value: 3.1E-25 score: 89.2
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..74 e-value: 8.3E-21 score: 74.6
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012288.1	MS012288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding