Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACTGAGTCTGGGGTATTCTCACTCGCACTTTCTTGGGATGAACACTAGAAGTCCTTTAGGTTATCCTATTTCCTTCGCTGAAATACACTCTCAGTCATTTCTGACACGGACAAGCGTTGGCCATCTTTTCGATTGTGTTCGGCGCTCGTTTGCTCCTTAGTTCTCCAATGCTCTTCCAACGAGTGGTGAATGCTAATCCGTTATCAGAAACCATTGAGAATGCATTTTAGCAAAGGAAACAGGCTAAGCTAAAGGACTTCTAGTGTTCGTCCCAAGAAAGTGCAAGCGAGAATACCTCAGACTCAGTTTTTCCATCGCAGGGTAAAAAGCGGTGCGGTGGTTACTTTGTTATGTGTTGTGTTGGTCATAAGCATTTCAAGCTTCGGGTTTCATACTCCGAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACCCATTTTCCCAAAGTATAGGTCGGGTAGCGAGCTCATTGGAGGGAGAACTAAGGTCCAACCTGGAACGATCGAAAAGATGGTCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCCGGTGTCAGAAACCAATGAGAATGCATTTCAGGGAAGGAAACGGGCTAAGCTCAAGAAGTTCTGGTGTTTGTCTCAGGAAAGTTCGAGTGAGAATGCCCCGGACTCAGTTTTACCATCGCGGAGTAAAAAGCGGTTCTGGAACTGTTTCTTTGTTTTGTATTAGTCATAAGTTTTTCGAGATTCAGGACGCATACTCCGAGGATTAAAATCTACATTCCTGGCATCGTCCCTCACACACTTTCCTAA
mRNA sequence
ATGGAAAAACTGAGTCTGGGGTATTCTCACTCGCACTTTCTTGGGATGAACACTAGAAGTCCTTTAGGTTATCCTATTTCCTTCGCTGAAATACACTCTCAGTCATTTCTGACACGGACAAGCGTTGGCCATCTTTTCGATTGTGTTCGGCGCTCGGTAAAAAGCGGTGCGGTGGTTACTTTGTTATGTGTTGTGTTGGTCATAAGCATTTCAAGCTTCGGGTTTCATACTCCGAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACCCATTTTCCCAAAGTATAGGTCGGGTAGCGAGCTCATTGGAGGGAGAACTAAGGTCCAACCTGGAACGATCGAAAAGATGGTCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCCGGTGTCAGAAACCAATGAGAATGCATTTCAGGGAAGGAAACGGGCTAAGCTCAAGAAGTTCTGGTGTTTGTCTCAGGAAAGTTCGAGTGAGAATGCCCCGGACTCAGTTTTACCATCGCGGAGTAAAAAGCGGACGCATACTCCGAGGATTAAAATCTACATTCCTGGCATCGTCCCTCACACACTTTCCTAA
Coding sequence (CDS)
ATGGAAAAACTGAGTCTGGGGTATTCTCACTCGCACTTTCTTGGGATGAACACTAGAAGTCCTTTAGGTTATCCTATTTCCTTCGCTGAAATACACTCTCAGTCATTTCTGACACGGACAAGCGTTGGCCATCTTTTCGATTGTGTTCGGCGCTCGGTAAAAAGCGGTGCGGTGGTTACTTTGTTATGTGTTGTGTTGGTCATAAGCATTTCAAGCTTCGGGTTTCATACTCCGAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACCCATTTTCCCAAAGTATAGGTCGGGTAGCGAGCTCATTGGAGGGAGAACTAAGGTCCAACCTGGAACGATCGAAAAGATGGTCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCCGGTGTCAGAAACCAATGAGAATGCATTTCAGGGAAGGAAACGGGCTAAGCTCAAGAAGTTCTGGTGTTTGTCTCAGGAAAGTTCGAGTGAGAATGCCCCGGACTCAGTTTTACCATCGCGGAGTAAAAAGCGGACGCATACTCCGAGGATTAAAATCTACATTCCTGGCATCGTCCCTCACACACTTTCCTAA
Protein sequence
MEKLSLGYSHSHFLGMNTRSPLGYPISFAEIHSQSFLTRTSVGHLFDCVRRSVKSGAVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLKKFWCLSQESSSENAPDSVLPSRSKKRTHTPRIKIYIPGIVPHTLS
Homology
BLAST of MELO3C035634 vs. NCBI nr
Match:
KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])
HSP 1 Score: 145.6 bits (366), Expect = 4.4e-31
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 0
Query: 53 VKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNL 112
VK+G +V+ CVVLVIS SSF HT RTSVYIPGIV H FSQSIGR ASS +GE R N
Sbjct: 1155 VKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIGREASSFKGEQRCNP 1214
Query: 113 ERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLKKFWCLSQESSSENAPDSVLPSRSK 172
+RSK W +LFQ+VANARPVS ++AFQ K AKLK FWC SQES+SENAPDSV S K
Sbjct: 1215 KRSKIWPILFQRVANARPVSGMIKHAFQQWKCAKLKNFWCSSQESASENAPDSVFLSPDK 1274
Query: 173 KRT 175
KR+
Sbjct: 1275 KRS 1277
BLAST of MELO3C035634 vs. NCBI nr
Match:
KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 0
Query: 69 SISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANAR 128
S SSF HTPRTSVYIPGIVPHPF QSIGR ASSLE +LR N E+SK+W MLFQ+VAN R
Sbjct: 100 STSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSLERKLRCNPEQSKKWPMLFQRVANTR 159
Query: 129 PVSETNENAFQGRKR--AKLKKFWCLSQESSSENAPDSVLPSRSKK 173
+S T ENAFQ KR ++ F +E+SS P RSK+
Sbjct: 160 SLSRTTENAFQQGKRLSSRTSGFRHKKREASSLERELRCNPERSKR 205
BLAST of MELO3C035634 vs. NCBI nr
Match:
KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 107.1 bits (266), Expect = 1.8e-19
Identity = 63/98 (64.29%), Postives = 69/98 (70.41%), Query Frame = 0
Query: 51 RSVK-SGAVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
R VK S V+L CVVLVI S+FG HTPRTSVYI GIVPH F QSI R ASSLEGELR
Sbjct: 251 RGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSICRDASSLEGELRC 310
Query: 111 NLERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLK 148
+ +RSKRW MLFQ+V NA VSET E F R L+
Sbjct: 311 HPKRSKRWPMLFQRVTNAHLVSETTEMYFSKGNRLSLR 348
BLAST of MELO3C035634 vs. NCBI nr
Match:
KAA0051943.1 (hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa])
HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0
Query: 68 ISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANA 127
+S++SFG HTPRTSVYIPGIVP FSQSIG ASSLE EL+ N +RSKRW + FQ+V NA
Sbjct: 367 LSVTSFGTHTPRTSVYIPGIVPRTFSQSIGWQASSLEEELKCNPKRSKRWPLRFQRVGNA 426
Query: 128 RPVSETNENAFQ 140
R V ET ENAFQ
Sbjct: 427 RIVLETTENAFQ 438
BLAST of MELO3C035634 vs. NCBI nr
Match:
KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])
HSP 1 Score: 98.6 bits (244), Expect = 6.2e-17
Identity = 79/209 (37.80%), Postives = 90/209 (43.06%), Query Frame = 0
Query: 51 RSVKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
R +KSG A V+L CV+LVIS SSF H R+S YIP IVPH FSQSI + S L GELR
Sbjct: 9 RGLKSGLATVSLFCVMLVISASSFETHALRSSFYIPRIVPHLFSQSIVQEVSLLGGELRC 68
Query: 111 NLERSKRWSMLFQQVAN------------------------------------------- 170
NLER KRW MLFQ+VA
Sbjct: 69 NLERPKRWLMLFQRVATLVWCQKPLKMHFSKGNELSSRTSGVYPRKVQARMSQTQFFHRG 128
Query: 171 -------------------------------------ARP-----VSETNENAFQGRKRA 174
RP V E + + RKRA
Sbjct: 129 LKSGPATVSLFCVVLVISASSFETRAPRISVYISGIVRRPFFQSIVREVSSLRGELRKRA 188
BLAST of MELO3C035634 vs. ExPASy TrEMBL
Match:
A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 0
Query: 53 VKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNL 112
VK+G +V+ CVVLVIS SSF HT RTSVYIPGIV H FSQSIGR ASS +GE R N
Sbjct: 1155 VKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIGREASSFKGEQRCNP 1214
Query: 113 ERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLKKFWCLSQESSSENAPDSVLPSRSK 172
+RSK W +LFQ+VANARPVS ++AFQ K AKLK FWC SQES+SENAPDSV S K
Sbjct: 1215 KRSKIWPILFQRVANARPVSGMIKHAFQQWKCAKLKNFWCSSQESASENAPDSVFLSPDK 1274
Query: 173 KRT 175
KR+
Sbjct: 1275 KRS 1277
BLAST of MELO3C035634 vs. ExPASy TrEMBL
Match:
A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 0
Query: 69 SISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANAR 128
S SSF HTPRTSVYIPGIVPHPF QSIGR ASSLE +LR N E+SK+W MLFQ+VAN R
Sbjct: 100 STSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSLERKLRCNPEQSKKWPMLFQRVANTR 159
Query: 129 PVSETNENAFQGRKR--AKLKKFWCLSQESSSENAPDSVLPSRSKK 173
+S T ENAFQ KR ++ F +E+SS P RSK+
Sbjct: 160 SLSRTTENAFQQGKRLSSRTSGFRHKKREASSLERELRCNPERSKR 205
BLAST of MELO3C035634 vs. ExPASy TrEMBL
Match:
A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 8.5e-20
Identity = 63/98 (64.29%), Postives = 69/98 (70.41%), Query Frame = 0
Query: 51 RSVK-SGAVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
R VK S V+L CVVLVI S+FG HTPRTSVYI GIVPH F QSI R ASSLEGELR
Sbjct: 251 RGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSICRDASSLEGELRC 310
Query: 111 NLERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLK 148
+ +RSKRW MLFQ+V NA VSET E F R L+
Sbjct: 311 HPKRSKRWPMLFQRVTNAHLVSETTEMYFSKGNRLSLR 348
BLAST of MELO3C035634 vs. ExPASy TrEMBL
Match:
A0A5A7U7P6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004060 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0
Query: 68 ISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANA 127
+S++SFG HTPRTSVYIPGIVP FSQSIG ASSLE EL+ N +RSKRW + FQ+V NA
Sbjct: 367 LSVTSFGTHTPRTSVYIPGIVPRTFSQSIGWQASSLEEELKCNPKRSKRWPLRFQRVGNA 426
Query: 128 RPVSETNENAFQ 140
R V ET ENAFQ
Sbjct: 427 RIVLETTENAFQ 438
BLAST of MELO3C035634 vs. ExPASy TrEMBL
Match:
A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 79/209 (37.80%), Postives = 90/209 (43.06%), Query Frame = 0
Query: 51 RSVKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
R +KSG A V+L CV+LVIS SSF H R+S YIP IVPH FSQSI + S L GELR
Sbjct: 9 RGLKSGLATVSLFCVMLVISASSFETHALRSSFYIPRIVPHLFSQSIVQEVSLLGGELRC 68
Query: 111 NLERSKRWSMLFQQVAN------------------------------------------- 170
NLER KRW MLFQ+VA
Sbjct: 69 NLERPKRWLMLFQRVATLVWCQKPLKMHFSKGNELSSRTSGVYPRKVQARMSQTQFFHRG 128
Query: 171 -------------------------------------ARP-----VSETNENAFQGRKRA 174
RP V E + + RKRA
Sbjct: 129 LKSGPATVSLFCVVLVISASSFETRAPRISVYISGIVRRPFFQSIVREVSSLRGELRKRA 188
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0065520.1 | 4.4e-31 | 67.48 | retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... | [more] |
| KAA0047414.1 | 2.1e-20 | 59.43 | gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ... | [more] |
| KAA0047411.1 | 1.8e-19 | 64.29 | gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ... | [more] |
| KAA0051943.1 | 1.3e-17 | 70.83 | hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa] | [more] |
| KAA0065516.1 | 6.2e-17 | 37.80 | uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VEB1 | 2.2e-31 | 67.48 | Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... | [more] |
| A0A5D3CV18 | 1.0e-20 | 59.43 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079... | [more] |
| A0A5D3CUK8 | 8.5e-20 | 64.29 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069... | [more] |
| A0A5A7U7P6 | 6.1e-18 | 70.83 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7VGQ5 | 3.0e-17 | 37.80 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
