MELO3C035634.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C035634.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag/pol protein
Location	chr12: 14954563 .. 14955367 (+)
Sequence length	579
RNA-Seq Expression	MELO3C035634.1
Synteny	MELO3C035634.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTGAGTCTGGGGTATTCTCACTCGCACTTTCTTGGGATGAACACTAGAAGTCCTTTAGGTTATCCTATTTCCTTCGCTGAAATACACTCTCAGTCATTTCTGACACGGACAAGCGTTGGCCATCTTTTCGATTGTGTTCGGCGCTCGTTTGCTCCTTAGTTCTCCAATGCTCTTCCAACGAGTGGTGAATGCTAATCCGTTATCAGAAACCATTGAGAATGCATTTTAGCAAAGGAAACAGGCTAAGCTAAAGGACTTCTAGTGTTCGTCCCAAGAAAGTGCAAGCGAGAATACCTCAGACTCAGTTTTTCCATCGCAGGGTAAAAAGCGGTGCGGTGGTTACTTTGTTATGTGTTGTGTTGGTCATAAGCATTTCAAGCTTCGGGTTTCATACTCCGAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACCCATTTTCCCAAAGTATAGGTCGGGTAGCGAGCTCATTGGAGGGAGAACTAAGGTCCAACCTGGAACGATCGAAAAGATGGTCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCCGGTGTCAGAAACCAATGAGAATGCATTTCAGGGAAGGAAACGGGCTAAGCTCAAGAAGTTCTGGTGTTTGTCTCAGGAAAGTTCGAGTGAGAATGCCCCGGACTCAGTTTTACCATCGCGGAGTAAAAAGCGGTTCTGGAACTGTTTCTTTGTTTTGTATTAGTCATAAGTTTTTCGAGATTCAGGACGCATACTCCGAGGATTAAAATCTACATTCCTGGCATCGTCCCTCACACACTTTCCTAA

mRNA sequence

ATGGAAAAACTGAGTCTGGGGTATTCTCACTCGCACTTTCTTGGGATGAACACTAGAAGTCCTTTAGGTTATCCTATTTCCTTCGCTGAAATACACTCTCAGTCATTTCTGACACGGACAAGCGTTGGCCATCTTTTCGATTGTGTTCGGCGCTCGGTAAAAAGCGGTGCGGTGGTTACTTTGTTATGTGTTGTGTTGGTCATAAGCATTTCAAGCTTCGGGTTTCATACTCCGAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACCCATTTTCCCAAAGTATAGGTCGGGTAGCGAGCTCATTGGAGGGAGAACTAAGGTCCAACCTGGAACGATCGAAAAGATGGTCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCCGGTGTCAGAAACCAATGAGAATGCATTTCAGGGAAGGAAACGGGCTAAGCTCAAGAAGTTCTGGTGTTTGTCTCAGGAAAGTTCGAGTGAGAATGCCCCGGACTCAGTTTTACCATCGCGGAGTAAAAAGCGGACGCATACTCCGAGGATTAAAATCTACATTCCTGGCATCGTCCCTCACACACTTTCCTAA

Coding sequence (CDS)

ATGGAAAAACTGAGTCTGGGGTATTCTCACTCGCACTTTCTTGGGATGAACACTAGAAGTCCTTTAGGTTATCCTATTTCCTTCGCTGAAATACACTCTCAGTCATTTCTGACACGGACAAGCGTTGGCCATCTTTTCGATTGTGTTCGGCGCTCGGTAAAAAGCGGTGCGGTGGTTACTTTGTTATGTGTTGTGTTGGTCATAAGCATTTCAAGCTTCGGGTTTCATACTCCGAGGACTTCAGTCTACATTCCTGGCATTGTCCCTCACCCATTTTCCCAAAGTATAGGTCGGGTAGCGAGCTCATTGGAGGGAGAACTAAGGTCCAACCTGGAACGATCGAAAAGATGGTCAATGCTCTTCCAACAAGTGGCGAACGCTCGTCCGGTGTCAGAAACCAATGAGAATGCATTTCAGGGAAGGAAACGGGCTAAGCTCAAGAAGTTCTGGTGTTTGTCTCAGGAAAGTTCGAGTGAGAATGCCCCGGACTCAGTTTTACCATCGCGGAGTAAAAAGCGGACGCATACTCCGAGGATTAAAATCTACATTCCTGGCATCGTCCCTCACACACTTTCCTAA

Protein sequence

MEKLSLGYSHSHFLGMNTRSPLGYPISFAEIHSQSFLTRTSVGHLFDCVRRSVKSGAVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLKKFWCLSQESSSENAPDSVLPSRSKKRTHTPRIKIYIPGIVPHTLS

Homology

[Close]

BLAST of MELO3C035634.1 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-31
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 53   VKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNL 112
            VK+G  +V+  CVVLVIS SSF  HT RTSVYIPGIV H FSQSIGR ASS +GE R N 
Sbjct: 1155 VKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIGREASSFKGEQRCNP 1214

Query: 113  ERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLKKFWCLSQESSSENAPDSVLPSRSK 172
            +RSK W +LFQ+VANARPVS   ++AFQ  K AKLK FWC SQES+SENAPDSV  S  K
Sbjct: 1215 KRSKIWPILFQRVANARPVSGMIKHAFQQWKCAKLKNFWCSSQESASENAPDSVFLSPDK 1274

Query: 173  KRT 175
            KR+
Sbjct: 1275 KRS 1277

[Close]

BLAST of MELO3C035634.1 vs. NCBI nr
Match: KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 69  SISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANAR 128
           S SSF  HTPRTSVYIPGIVPHPF QSIGR ASSLE +LR N E+SK+W MLFQ+VAN R
Sbjct: 100 STSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSLERKLRCNPEQSKKWPMLFQRVANTR 159

Query: 129 PVSETNENAFQGRKR--AKLKKFWCLSQESSSENAPDSVLPSRSKK 173
            +S T ENAFQ  KR  ++   F    +E+SS        P RSK+
Sbjct: 160 SLSRTTENAFQQGKRLSSRTSGFRHKKREASSLERELRCNPERSKR 205

[Close]

BLAST of MELO3C035634.1 vs. NCBI nr
Match: KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-19
Identity = 63/98 (64.29%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 51  RSVK-SGAVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
           R VK S   V+L CVVLVI  S+FG HTPRTSVYI GIVPH F QSI R ASSLEGELR 
Sbjct: 251 RGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSICRDASSLEGELRC 310

Query: 111 NLERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLK 148
           + +RSKRW MLFQ+V NA  VSET E  F    R  L+
Sbjct: 311 HPKRSKRWPMLFQRVTNAHLVSETTEMYFSKGNRLSLR 348

[Close]

BLAST of MELO3C035634.1 vs. NCBI nr
Match: KAA0051943.1 (hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 68  ISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANA 127
           +S++SFG HTPRTSVYIPGIVP  FSQSIG  ASSLE EL+ N +RSKRW + FQ+V NA
Sbjct: 367 LSVTSFGTHTPRTSVYIPGIVPRTFSQSIGWQASSLEEELKCNPKRSKRWPLRFQRVGNA 426

Query: 128 RPVSETNENAFQ 140
           R V ET ENAFQ
Sbjct: 427 RIVLETTENAFQ 438

[Close]

BLAST of MELO3C035634.1 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-17
Identity = 79/209 (37.80%), Postives = 90/209 (43.06%), Query Frame = 0


Query: 51  RSVKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
           R +KSG A V+L CV+LVIS SSF  H  R+S YIP IVPH FSQSI +  S L GELR 
Sbjct: 9   RGLKSGLATVSLFCVMLVISASSFETHALRSSFYIPRIVPHLFSQSIVQEVSLLGGELRC 68

Query: 111 NLERSKRWSMLFQQVAN------------------------------------------- 170
           NLER KRW MLFQ+VA                                            
Sbjct: 69  NLERPKRWLMLFQRVATLVWCQKPLKMHFSKGNELSSRTSGVYPRKVQARMSQTQFFHRG 128

Query: 171 -------------------------------------ARP-----VSETNENAFQGRKRA 174
                                                 RP     V E +    + RKRA
Sbjct: 129 LKSGPATVSLFCVVLVISASSFETRAPRISVYISGIVRRPFFQSIVREVSSLRGELRKRA 188

[Close]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 53   VKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNL 112
            VK+G  +V+  CVVLVIS SSF  HT RTSVYIPGIV H FSQSIGR ASS +GE R N 
Sbjct: 1155 VKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIGREASSFKGEQRCNP 1214

Query: 113  ERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLKKFWCLSQESSSENAPDSVLPSRSK 172
            +RSK W +LFQ+VANARPVS   ++AFQ  K AKLK FWC SQES+SENAPDSV  S  K
Sbjct: 1215 KRSKIWPILFQRVANARPVSGMIKHAFQQWKCAKLKNFWCSSQESASENAPDSVFLSPDK 1274

Query: 173  KRT 175
            KR+
Sbjct: 1275 KRS 1277

[Close]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL
Match: A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 69  SISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANAR 128
           S SSF  HTPRTSVYIPGIVPHPF QSIGR ASSLE +LR N E+SK+W MLFQ+VAN R
Sbjct: 100 STSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSLERKLRCNPEQSKKWPMLFQRVANTR 159

Query: 129 PVSETNENAFQGRKR--AKLKKFWCLSQESSSENAPDSVLPSRSKK 173
            +S T ENAFQ  KR  ++   F    +E+SS        P RSK+
Sbjct: 160 SLSRTTENAFQQGKRLSSRTSGFRHKKREASSLERELRCNPERSKR 205

[Close]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL
Match: A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.5e-20
Identity = 63/98 (64.29%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 51  RSVK-SGAVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
           R VK S   V+L CVVLVI  S+FG HTPRTSVYI GIVPH F QSI R ASSLEGELR 
Sbjct: 251 RGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSICRDASSLEGELRC 310

Query: 111 NLERSKRWSMLFQQVANARPVSETNENAFQGRKRAKLK 148
           + +RSKRW MLFQ+V NA  VSET E  F    R  L+
Sbjct: 311 HPKRSKRWPMLFQRVTNAHLVSETTEMYFSKGNRLSLR 348

[Close]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL
Match: A0A5A7U7P6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004060 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 68  ISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRSNLERSKRWSMLFQQVANA 127
           +S++SFG HTPRTSVYIPGIVP  FSQSIG  ASSLE EL+ N +RSKRW + FQ+V NA
Sbjct: 367 LSVTSFGTHTPRTSVYIPGIVPRTFSQSIGWQASSLEEELKCNPKRSKRWPLRFQRVGNA 426

Query: 128 RPVSETNENAFQ 140
           R V ET ENAFQ
Sbjct: 427 RIVLETTENAFQ 438

[Close]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 79/209 (37.80%), Postives = 90/209 (43.06%), Query Frame = 0


Query: 51  RSVKSG-AVVTLLCVVLVISISSFGFHTPRTSVYIPGIVPHPFSQSIGRVASSLEGELRS 110
           R +KSG A V+L CV+LVIS SSF  H  R+S YIP IVPH FSQSI +  S L GELR 
Sbjct: 9   RGLKSGLATVSLFCVMLVISASSFETHALRSSFYIPRIVPHLFSQSIVQEVSLLGGELRC 68

Query: 111 NLERSKRWSMLFQQVAN------------------------------------------- 170
           NLER KRW MLFQ+VA                                            
Sbjct: 69  NLERPKRWLMLFQRVATLVWCQKPLKMHFSKGNELSSRTSGVYPRKVQARMSQTQFFHRG 128

Query: 171 -------------------------------------ARP-----VSETNENAFQGRKRA 174
                                                 RP     V E +    + RKRA
Sbjct: 129 LKSGPATVSLFCVVLVISASSFETRAPRISVYISGIVRRPFFQSIVREVSSLRGELRKRA 188

The following BLAST results are available for this feature:

BLAST of MELO3C035634.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035634.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065520.1	4.4e-31	67.48	retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v...	[more]
KAA0047414.1	2.1e-20	59.43	gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ...	[more]
KAA0047411.1	1.8e-19	64.29	gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ...	[more]
KAA0051943.1	1.3e-17	70.83	hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa]	[more]
KAA0065516.1	6.2e-17	37.80	uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEB1	2.2e-31	67.48	Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo...	[more]
A0A5D3CV18	1.0e-20	59.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079...	[more]
A0A5D3CUK8	8.5e-20	64.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069...	[more]
A0A5A7U7P6	6.1e-18	70.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VGQ5	3.0e-17	37.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C035634.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035634	MELO3C035634	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035634.1:exon:354722	MELO3C035634.1:exon:354722	exon
MELO3C035634.1:exon:354723	MELO3C035634.1:exon:354723	exon
MELO3C035634.1:exon:354724	MELO3C035634.1:exon:354724	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035634.1:cds	MELO3C035634.1:cds	CDS
MELO3C035634.1:cds	MELO3C035634.1:cds_2	CDS
MELO3C035634.1:cds	MELO3C035634.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035634.1	MELO3C035634.1-protein	polypeptide