Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGCAAGAATCAACAAGCATCGTGTAGCAAAACAATAAGGTGTAAAGTAAAGACAGAAGAAAGAAAATTAAAGAAAGAAAAAGGAATAAAGGCAACAAACTAGAATGTGAATATCTGTCTGTATAGCATTGTATATTTGTGTATCTTTTTCTTTATAGCGCTCTGCATTTGTAAATTTGTTTAAACTTACCCTTGTTGTTTAAAACATACAATTTATTATGTCATTCAACAGGTGAAACACTATCCAAATGACATTATATGGAAGATGAACAAAAAAACCTTAGAATTAATATATACTATAGTTTAGAAACATTGAATCAGATCAAGTCAAAAATAGACAAAAGAATTCTTTATCGAGTTTTGACAAACAATCCTTTTGGCCAGTTCCTTAACATTAAAATGGCCAAAATACTAACACAATTTCTGAATTTTCTATTAAGAAAACAATGCCATACAAAAAAAACTAATGTCCTTGCTTTCAACTTCAATGGACATATAGCAGAATTTAGGCTGAAAGACTTTTGTTTTGTGATTGGACTAAAAGGTCACAAATTTCCTGAGTTAAATCTAGGAGAAAGAAAAGAAAATAGTCTGAAAAATGTGTTTTTTTGTCATGATGACTTTATAACAGAAGAGATATAGAAAGAACTTTCAAAACGTTGTGCAACGTGGAAGACTCATTGAAAGAAAAACTAGTTAACCTCTATATCTTAGAAACATTTTAATTCCCAAGCAGCAACACAACCACATAAATCTCCTACATCTAGACATATTGGATAATAAAGAAATCTTCAAAGGCTATCTATGGGGAAGGTTATCATACATTCTAACATATCAGTTCTTGAAAAGAACATCCTACTGTGACAAGGATGTTGTATACCTTCAAGGGTTTCCCTTAGCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTAGGGTTCGGAAAAAAGCTTGAAACAGAAGGGCCGCCAATTGTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTGAAGATCGACATTTTTGAATCTGAGAATGTAAGTAAACTTAGAGCATGCTTTATATATATCTATCTAGATAAACAATGAAAGATTTTCTATCCATGTCTATTTTGAATAGATAATGATATAAGTCTATCGCTGTTTATCAATACCTTTACTACTTTTTTACTAATAATCTAATATCATTTTATTTGTAGTTCTCTATGACATCTCTAGACTCATCAGAAGAAGAGTCTCAAACAATTTTGAAATAA
mRNA sequence
ATGGTGAGCAAGAATCAACAAGCATCGTGTAGCAAAACAATAAGAAACATTTTAATTCCCAAGCAGCAACACAACCACATAAATCTCCTACATCTAGACATATTGGATAATAAAGAAATCTTCAAAGGCTATCTATGGGGAAGGTTATCATACATTCTAACATATCAGTTCTTGAAAAGAACATCCTACTGTGACAAGGATGTTGTATACCTTCAAGGGTTTCCCTTAGCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTAGGGTTCGGAAAAAAGCTTGAAACAGAAGGGCCGCCAATTGTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTGAAGATCGACATTTTTGAATCTGAGAATTTCTCTATGACATCTCTAGACTCATCAGAAGAAGAGTCTCAAACAATTTTGAAATAA
Coding sequence (CDS)
ATGGTGAGCAAGAATCAACAAGCATCGTGTAGCAAAACAATAAGAAACATTTTAATTCCCAAGCAGCAACACAACCACATAAATCTCCTACATCTAGACATATTGGATAATAAAGAAATCTTCAAAGGCTATCTATGGGGAAGGTTATCATACATTCTAACATATCAGTTCTTGAAAAGAACATCCTACTGTGACAAGGATGTTGTATACCTTCAAGGGTTTCCCTTAGCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTAGGGTTCGGAAAAAAGCTTGAAACAGAAGGGCCGCCAATTGTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTGAAGATCGACATTTTTGAATCTGAGAATTTCTCTATGACATCTCTAGACTCATCAGAAGAAGAGTCTCAAACAATTTTGAAATAA
Protein sequence
MVSKNQQASCSKTIRNILIPKQQHNHINLLHLDILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSLDSSEEESQTILK
Homology
BLAST of MELO3C035049 vs. NCBI nr
Match:
KAA0038287.1 (DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa])
HSP 1 Score: 182.6 bits (462), Expect = 2.5e-42
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0
Query: 21 KQQHNHINLLHLDILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVY 80
K QHNHINLLHLDIL+N+EIFKGY WGRLSYILTYQFLK+ SY DKDVVYLQGFPLALVY
Sbjct: 232 KLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVY 291
Query: 81 WAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSD 118
WA EKIPR SNLDVGFG+KL EGPPIVTWECL+TSD
Sbjct: 292 WALEKIPRFSNLDVGFGRKLAIEGPPIVTWECLKTSD 328
BLAST of MELO3C035049 vs. NCBI nr
Match:
XP_038891747.1 (pescadillo homolog [Benincasa hispida])
HSP 1 Score: 104.4 bits (259), Expect = 8.7e-19
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 0
Query: 34 ILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVYWAFEKIPRLSNLD 93
+LD++E F+ Y WGR+S+ LT +F K+ ++LQGFPL LVYWAFE IPRLSN
Sbjct: 1 MLDDEERFRSYPWGRVSFELTIEFFKKVVINKPSSIFLQGFPLGLVYWAFEIIPRLSNPT 60
Query: 94 VGFGKKLETEGPPIVTWECLETSDWRTLKIDIFES 129
+GF ++++++GP + WE E +DW+ + +IF++
Sbjct: 61 IGFARRIKSDGPRLTQWESQEPNDWQHINNNIFKA 95
BLAST of MELO3C035049 vs. NCBI nr
Match:
KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])
HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
BLAST of MELO3C035049 vs. NCBI nr
Match:
TYK08201.1 (40S ribosomal protein S15-4 [Cucumis melo var. makuwa])
HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
BLAST of MELO3C035049 vs. NCBI nr
Match:
KAA0059898.1 (uncharacterized protein E6C27_scaffold108G001930 [Cucumis melo var. makuwa])
HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNPVKSKRKSKNLETESKACAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match:
A0A5A7T9I0 (DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001480 PE=4 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0
Query: 21 KQQHNHINLLHLDILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVY 80
K QHNHINLLHLDIL+N+EIFKGY WGRLSYILTYQFLK+ SY DKDVVYLQGFPLALVY
Sbjct: 232 KLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVY 291
Query: 81 WAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSD 118
WA EKIPR SNLDVGFG+KL EGPPIVTWECL+TSD
Sbjct: 292 WALEKIPRFSNLDVGFGRKLAIEGPPIVTWECLKTSD 328
BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match:
A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match:
A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKAYAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match:
A0A5A7UXF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001930 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNPVKSKRKSKNLETESKACAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match:
A0A5D3C8N2 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00170 PE=3 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 27 INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
++L H+ +LD+KE F+ Y WGRL + LT QF+ K K +LQGFP+
Sbjct: 2 LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61
Query: 87 ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
L YWA+E +P+L++ G+ ++ P I+ WE E DW+ L+ +IF +N S+ +
Sbjct: 62 VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0038287.1 | 2.5e-42 | 86.60 | DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa] | [more] |
| XP_038891747.1 | 8.7e-19 | 45.26 | pescadillo homolog [Benincasa hispida] | [more] |
| KAA0031317.1 | 3.8e-14 | 36.43 | uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0... | [more] |
| TYK08201.1 | 3.8e-14 | 36.43 | 40S ribosomal protein S15-4 [Cucumis melo var. makuwa] | [more] |
| KAA0059898.1 | 3.8e-14 | 36.43 | uncharacterized protein E6C27_scaffold108G001930 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T9I0 | 1.2e-42 | 86.60 | DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5A7VIA9 | 1.8e-14 | 36.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DFX6 | 1.8e-14 | 36.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UXF1 | 1.8e-14 | 36.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3C8N2 | 1.8e-14 | 36.43 | 40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
