MELO3C035049 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035049
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase I subunit RPA1-like
Location	chr11: 17476783 .. 17478065 (-)
RNA-Seq Expression	MELO3C035049
Synteny	MELO3C035049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCAAGAATCAACAAGCATCGTGTAGCAAAACAATAAGGTGTAAAGTAAAGACAGAAGAAAGAAAATTAAAGAAAGAAAAAGGAATAAAGGCAACAAACTAGAATGTGAATATCTGTCTGTATAGCATTGTATATTTGTGTATCTTTTTCTTTATAGCGCTCTGCATTTGTAAATTTGTTTAAACTTACCCTTGTTGTTTAAAACATACAATTTATTATGTCATTCAACAGGTGAAACACTATCCAAATGACATTATATGGAAGATGAACAAAAAAACCTTAGAATTAATATATACTATAGTTTAGAAACATTGAATCAGATCAAGTCAAAAATAGACAAAAGAATTCTTTATCGAGTTTTGACAAACAATCCTTTTGGCCAGTTCCTTAACATTAAAATGGCCAAAATACTAACACAATTTCTGAATTTTCTATTAAGAAAACAATGCCATACAAAAAAAACTAATGTCCTTGCTTTCAACTTCAATGGACATATAGCAGAATTTAGGCTGAAAGACTTTTGTTTTGTGATTGGACTAAAAGGTCACAAATTTCCTGAGTTAAATCTAGGAGAAAGAAAAGAAAATAGTCTGAAAAATGTGTTTTTTTGTCATGATGACTTTATAACAGAAGAGATATAGAAAGAACTTTCAAAACGTTGTGCAACGTGGAAGACTCATTGAAAGAAAAACTAGTTAACCTCTATATCTTAGAAACATTTTAATTCCCAAGCAGCAACACAACCACATAAATCTCCTACATCTAGACATATTGGATAATAAAGAAATCTTCAAAGGCTATCTATGGGGAAGGTTATCATACATTCTAACATATCAGTTCTTGAAAAGAACATCCTACTGTGACAAGGATGTTGTATACCTTCAAGGGTTTCCCTTAGCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTAGGGTTCGGAAAAAAGCTTGAAACAGAAGGGCCGCCAATTGTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTGAAGATCGACATTTTTGAATCTGAGAATGTAAGTAAACTTAGAGCATGCTTTATATATATCTATCTAGATAAACAATGAAAGATTTTCTATCCATGTCTATTTTGAATAGATAATGATATAAGTCTATCGCTGTTTATCAATACCTTTACTACTTTTTTACTAATAATCTAATATCATTTTATTTGTAGTTCTCTATGACATCTCTAGACTCATCAGAAGAAGAGTCTCAAACAATTTTGAAATAA

mRNA sequence

ATGGTGAGCAAGAATCAACAAGCATCGTGTAGCAAAACAATAAGAAACATTTTAATTCCCAAGCAGCAACACAACCACATAAATCTCCTACATCTAGACATATTGGATAATAAAGAAATCTTCAAAGGCTATCTATGGGGAAGGTTATCATACATTCTAACATATCAGTTCTTGAAAAGAACATCCTACTGTGACAAGGATGTTGTATACCTTCAAGGGTTTCCCTTAGCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTAGGGTTCGGAAAAAAGCTTGAAACAGAAGGGCCGCCAATTGTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTGAAGATCGACATTTTTGAATCTGAGAATTTCTCTATGACATCTCTAGACTCATCAGAAGAAGAGTCTCAAACAATTTTGAAATAA

Coding sequence (CDS)

ATGGTGAGCAAGAATCAACAAGCATCGTGTAGCAAAACAATAAGAAACATTTTAATTCCCAAGCAGCAACACAACCACATAAATCTCCTACATCTAGACATATTGGATAATAAAGAAATCTTCAAAGGCTATCTATGGGGAAGGTTATCATACATTCTAACATATCAGTTCTTGAAAAGAACATCCTACTGTGACAAGGATGTTGTATACCTTCAAGGGTTTCCCTTAGCTTTAGTCTATTGGGCTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTAGGGTTCGGAAAAAAGCTTGAAACAGAAGGGCCGCCAATTGTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTGAAGATCGACATTTTTGAATCTGAGAATTTCTCTATGACATCTCTAGACTCATCAGAAGAAGAGTCTCAAACAATTTTGAAATAA

Protein sequence

MVSKNQQASCSKTIRNILIPKQQHNHINLLHLDILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSLDSSEEESQTILK

Homology

[Close]

BLAST of MELO3C035049 vs. NCBI nr
Match: KAA0038287.1 (DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-42
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 21  KQQHNHINLLHLDILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVY 80
           K QHNHINLLHLDIL+N+EIFKGY WGRLSYILTYQFLK+ SY DKDVVYLQGFPLALVY
Sbjct: 232 KLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVY 291

Query: 81  WAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSD 118
           WA EKIPR SNLDVGFG+KL  EGPPIVTWECL+TSD
Sbjct: 292 WALEKIPRFSNLDVGFGRKLAIEGPPIVTWECLKTSD 328

[Close]

BLAST of MELO3C035049 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-19
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 34  ILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVYWAFEKIPRLSNLD 93
           +LD++E F+ Y WGR+S+ LT +F K+        ++LQGFPL LVYWAFE IPRLSN  
Sbjct: 1   MLDDEERFRSYPWGRVSFELTIEFFKKVVINKPSSIFLQGFPLGLVYWAFEIIPRLSNPT 60

Query: 94  VGFGKKLETEGPPIVTWECLETSDWRTLKIDIFES 129
           +GF ++++++GP +  WE  E +DW+ +  +IF++
Sbjct: 61  IGFARRIKSDGPRLTQWESQEPNDWQHINNNIFKA 95

[Close]

BLAST of MELO3C035049 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

[Close]

BLAST of MELO3C035049 vs. NCBI nr
Match: TYK08201.1 (40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

[Close]

BLAST of MELO3C035049 vs. NCBI nr
Match: KAA0059898.1 (uncharacterized protein E6C27_scaffold108G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNPVKSKRKSKNLETESKACAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

[Close]

BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match: A0A5A7T9I0 (DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001480 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 21  KQQHNHINLLHLDILDNKEIFKGYLWGRLSYILTYQFLKRTSYCDKDVVYLQGFPLALVY 80
           K QHNHINLLHLDIL+N+EIFKGY WGRLSYILTYQFLK+ SY DKDVVYLQGFPLALVY
Sbjct: 232 KLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVY 291

Query: 81  WAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSD 118
           WA EKIPR SNLDVGFG+KL  EGPPIVTWECL+TSD
Sbjct: 292 WALEKIPRFSNLDVGFGRKLAIEGPPIVTWECLKTSD 328

[Close]

BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

[Close]

BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKAYAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

[Close]

BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match: A0A5A7UXF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001930 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNPVKSKRKSKNLETESKACAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

[Close]

BLAST of MELO3C035049 vs. ExPASy TrEMBL
Match: A0A5D3C8N2 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00170 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 27  INLLHLDILDNKEIFKGYLWGRLSYILTYQFL----------KRTSYCDKDVVYLQGFPL 86
           ++L H+ +LD+KE F+ Y WGRL + LT QF+          K      K   +LQGFP+
Sbjct: 2   LDLKHVKMLDDKEKFRNYPWGRLCFSLTKQFIQNAVKSKRKSKNLETESKACAFLQGFPM 61

Query: 87  ALVYWAFEKIPRLSNLDVGFGKKLETEGPPIVTWECLETSDWRTLKIDIFESENFSMTSL 146
            L YWA+E +P+L++   G+  ++    P I+ WE  E  DW+ L+ +IF  +N S+  +
Sbjct: 62  VLAYWAYEILPQLAS---GYVTRIGKGCPRILNWESSEQLDWQDLEDNIFLEKNLSVVPI 121

The following BLAST results are available for this feature:

BLAST of MELO3C035049 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038287.1	2.5e-42	86.60	DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa]	[more]
XP_038891747.1	8.7e-19	45.26	pescadillo homolog [Benincasa hispida]	[more]
KAA0031317.1	3.8e-14	36.43	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
TYK08201.1	3.8e-14	36.43	40S ribosomal protein S15-4 [Cucumis melo var. makuwa]	[more]
KAA0059898.1	3.8e-14	36.43	uncharacterized protein E6C27_scaffold108G001930 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9I0	1.2e-42	86.60	DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7VIA9	1.8e-14	36.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFX6	1.8e-14	36.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UXF1	1.8e-14	36.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C8N2	1.8e-14	36.43	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of MELO3C035049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035049.1	MELO3C035049.1	mRNA