Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTAACCTTATCGGGTTTTACTTTTGTTGTCACCTCGAAAGGTCCTACCAACTCAGCGTCTGTTGTGAGAGGTAGTAATATAATACTAGGGAGGAAAAGTGTGTTTATTCAACGACCAAAAAGTAAAAAATAATATAACATACACACACATATAATAATAATAATGATTAAAAAAAGATAAAAAATAAAAGAAAGAAAAGATATAATTAAGAGAGAATAAATAAGAAAAATAAAGACTAGGGTTGAAGAAGGTTGTTGGGCTTTATATACTAAAACTTGTGATTTGTGATTGTTAAACTATTCTATAATTCAATAAACTTATTGAATTATTGTTCAATAAGTTGTCATTAAATAAAGAAATTGGCTTATAATAAAACTCATAATCCAATTCCTCTAGTATGAGTACTTGAACTTTATGTAGAAATATAAACATGGATCAAGTTTGAGTAATAGTCTGAATGGTCTATAGTATAAAAATAAGGTTGAGCACCTATTGGATCTGGGGACTCTATGGATGCGAGTCACTTTGTTTTAGTATGAGCGGAGTGATCTTGAGATGCTCATGTAGAGACGAGCAAGTGGAAACATCCTATGCAATGAGATTGTATGGATTGGACCATGAAATAATCACTTTTACAGTATAAATCATTTACTGTTTAAAATGGACTATTTCTACTTCATGATGACCTATAAAACTTGACCTTAATCTTAATCTAACTATGAACCTCCGTTCACATGGGATTATCCTTAGATCTACATAAGTGAAGGTAACTCATCAACGGTGGCCCAATAGACCTCCCATTTCAAAGGTAAGGTTGAGTAGGTAGTTGGAGACATAAAGTGTAAGACGAAATTTACTCCTATCCGCTTTTGGGGTTAGTAGATAAGTTGTTTCTTAAGTGTTGAATCCAAGTCTTGAACAAAAGGAACTGTCCTCTTATTGGCCTGAGAGAGATTCAATTTATAGGTTGAACCTTAAGCCAATTGGTTCATTAAAGGAACAAGATATAATCTCGGGGGTAATATGACAAATTGACCCAACCGAGATTATGAAAAAGCATGTAAAGGGTTGATTTAATAATCATAGCTATATTAAGTAAACACAAATATATCTACAGTGGTGAGAGTACAACTACGGGCTATAGTGGACAGTCTTGGTTAGCTAACGAATGTTGATTAACTCGGTTAAAAGAATTTAACGAGTTAATCTCGGATCATTGAGGCTCAGGTTCTGTAGGTCCATTAGGCTTCTCTACTAACTCATTATGGATATGAACTTAGAACAAAGTGATCAAGAAATTCAAATTGTTCAAATTAGTCAAGAAATATGAGTCGTTAGTAATATTCAATATAATTAACGATTATAAAACGAGAGAAATAATATTTAAATAAGATTCCAATATTAAAAATTAAAATAGAGATTGGTTGAAATTAAGTGGAATTTAATTAATTAAATCGTTTAATGTAATTTGTTTATTTTAAAATTAATTAATTAATTAAGTACAACAAGGAAAAATAGAAATTTTTTATTTTTTCTAAAAAGTCAAGGTAAAATGTTGACTTTTGACCTTTATAAGTCAAAGGTTGACTTTGATCTTGAATTAGCTGATAATTATCTTATTGTTGATGAGTAAGCTGATATGCGCCTATTATGCTGCTCATCAACATTTCTTCTGCCTAATCCACTATCTAATAGTTTGTTAAATGTCAAATTGTTATGCAAATATGATTTGTATGTACTTTAGCTATTTAATGCACAATTTGATTGTGTTCTTTACGATGATGAAAATTGAGATTTTTGGAAAAATTTCTTAAGTGTTCACAAACCTTTTCAAAATACCTCTCGTTCTCATCTCCTCCTTCAAAATCATTGTCTCTTTCACAGTCTTCAAAGCCAAACGCCTAATCACCACCTCCAATTCTGTTTCCCTAGCTGATCTCGACGTGTCGGTAAACCTAGCTACAGTCTCCGTCGACATCAATATTACTCTAATTGCCAGCATCTCAATCACGAACCCTAATAAGGTCGAATTCAACTACAAAGAACAACACCACGTTTTTGAATTATAGAGGGGAATTGTCGAAGTGCTGATTATGGCTGGAAAGATCGATGCAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCATTGAATACGTATACGAGGATTTCAGGTATGGTGAAGATTTTGGGGATTTATATGTTTTGTTTAGTATTCTGATGGAATTTATCGAACGTACATTAAGTATTTACTATAAGAGTTTACACAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACCCGTCGTCGTTGTGACATTTACCTCTAG
mRNA sequence
GAGTAACCTTATCGGGTTTTACTTTTGTTGTCACCTCGAAAGGTCCTACCAACTCAGCGTCTGTTGTGAGAGTGTTCACAAACCTTTTCAAAATACCTCTCGTTCTCATCTCCTCCTTCAAAATCATTGTCTCTTTCACAGTCTTCAAAGCCAAACGCCTAATCACCACCTCCAATTCTGTTTCCCTAGCTGATCTCGACGTGTCGGTAAACCTAGCTACAGTCTCCGTCGACATCAATATTACTCTAATTGCCAGCATCTCAATCACGAACCCTAATAAGGTCGAATTCAACTACAAAGAACAACACCACGTTTTTGAATTATAGAGGGGAATTGTCGAAGTGCTGATTATGGCTGGAAAGATCGATGCAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCATTGAATACGTATACGAGGATTTCAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACCCGTCGTCGTTGTGACATTTACCTCTAG
Coding sequence (CDS)
ATGGCTGGAAAGATCGATGCAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCATTGAATACGTATACGAGGATTTCAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACCCGTCGTCGTTGTGACATTTACCTCTAG
Protein sequence
MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISVCFNDTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL
Homology
BLAST of MELO3C035014 vs. NCBI nr
Match:
TYK01048.1 (F-box protein CPR30-like [Cucumis melo var. makuwa])
HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0
Query: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISVCFNDTEINTFS 60
MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS EINTFS
Sbjct: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS------EINTFS 60
Query: 61 FLKLPLSLNSLVSFFDTDFPLNDDLWLV 89
FLKLPLSLNSLVSFFDTDFPLNDDL ++
Sbjct: 61 FLKLPLSLNSLVSFFDTDFPLNDDLCIL 82
BLAST of MELO3C035014 vs. NCBI nr
Match:
XP_008443617.1 (PREDICTED: F-box protein CPR30-like [Cucumis melo] >KAA0053770.1 F-box protein CPR30-like [Cucumis melo var. makuwa] >TYK25632.1 F-box protein CPR30-like [Cucumis melo var. makuwa])
HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0
Query: 53 DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
DTEIN FSFLKLPLSLNS VSFFDTDFPLN+D VEILGHSHGLI LTRRRCDIYL
Sbjct: 65 DTEINNFSFLKLPLSLNSSVSFFDTDFPLNEDFRSVEILGHSHGLICLTRRRCDIYL 121
BLAST of MELO3C035014 vs. NCBI nr
Match:
XP_011652864.1 (F-box/kelch-repeat protein At3g06240-like [Cucumis sativus] >KAE8651217.1 hypothetical protein Csa_000922 [Cucumis sativus])
HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0
Query: 53 DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
DTE+NTFSFL+LPLSLNS VSFFD DFPLN+ VEI+GHSHGLI LT R DI+L
Sbjct: 65 DTEVNTFSFLELPLSLNSSVSFFDIDFPLNEYFRWVEIIGHSHGLICLTVRHWDIFL 121
BLAST of MELO3C035014 vs. NCBI nr
Match:
TYK06201.1 (uncharacterized protein E5676_scaffold287G00590 [Cucumis melo var. makuwa])
HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 174
BLAST of MELO3C035014 vs. NCBI nr
Match:
XP_008463309.1 (PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo])
HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 175
BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match:
A0A5D3BPQ5 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00560 PE=4 SV=1)
HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0
Query: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISVCFNDTEINTFS 60
MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS EINTFS
Sbjct: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS------EINTFS 60
Query: 61 FLKLPLSLNSLVSFFDTDFPLNDDLWLV 89
FLKLPLSLNSLVSFFDTDFPLNDDL ++
Sbjct: 61 FLKLPLSLNSLVSFFDTDFPLNDDLCIL 82
BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match:
A0A5A7UEX1 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007920 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0
Query: 53 DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
DTEIN FSFLKLPLSLNS VSFFDTDFPLN+D VEILGHSHGLI LTRRRCDIYL
Sbjct: 65 DTEINNFSFLKLPLSLNSSVSFFDTDFPLNEDFRSVEILGHSHGLICLTRRRCDIYL 121
BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match:
A0A1S3B974 (F-box protein CPR30-like OS=Cucumis melo OX=3656 GN=LOC103487173 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0
Query: 53 DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
DTEIN FSFLKLPLSLNS VSFFDTDFPLN+D VEILGHSHGLI LTRRRCDIYL
Sbjct: 65 DTEINNFSFLKLPLSLNSSVSFFDTDFPLNEDFRSVEILGHSHGLICLTRRRCDIYL 121
BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match:
A0A5D3C2Q6 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00590 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 7.4e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 174
BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match:
A0A5A7UIZ3 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00110 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 7.4e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query: 1 MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 175
BLAST of MELO3C035014 vs. TAIR 10
Match:
AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )
HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 0
Query: 2 AGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
A +I A + +NIT+T+MADRLL T + S+V+AG + LNT+ +++
Sbjct: 148 ANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVT 194
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| TYK01048.1 | 4.3e-31 | 89.77 | F-box protein CPR30-like [Cucumis melo var. makuwa] | [more] |
| XP_008443617.1 | 1.4e-18 | 87.72 | PREDICTED: F-box protein CPR30-like [Cucumis melo] >KAA0053770.1 F-box protein C... | [more] |
| XP_011652864.1 | 2.4e-13 | 73.68 | F-box/kelch-repeat protein At3g06240-like [Cucumis sativus] >KAE8651217.1 hypoth... | [more] |
| TYK06201.1 | 1.5e-12 | 89.58 | uncharacterized protein E5676_scaffold287G00590 [Cucumis melo var. makuwa] | [more] |
| XP_008463309.1 | 1.5e-12 | 89.58 | PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BPQ5 | 2.1e-31 | 89.77 | F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7UEX1 | 6.9e-19 | 87.72 | F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A1S3B974 | 6.9e-19 | 87.72 | F-box protein CPR30-like OS=Cucumis melo OX=3656 GN=LOC103487173 PE=4 SV=1 | [more] |
| A0A5D3C2Q6 | 7.4e-13 | 89.58 | LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7UIZ3 | 7.4e-13 | 89.58 | LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G54200.1 | 2.1e-04 | 44.68 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | [more] |
