MELO3C035014 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035014
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	F-box protein CPR30-like
Location	chr11: 14855233 .. 14857753 (+)
RNA-Seq Expression	MELO3C035014
Synteny	MELO3C035014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTAACCTTATCGGGTTTTACTTTTGTTGTCACCTCGAAAGGTCCTACCAACTCAGCGTCTGTTGTGAGAGGTAGTAATATAATACTAGGGAGGAAAAGTGTGTTTATTCAACGACCAAAAAGTAAAAAATAATATAACATACACACACATATAATAATAATAATGATTAAAAAAAGATAAAAAATAAAAGAAAGAAAAGATATAATTAAGAGAGAATAAATAAGAAAAATAAAGACTAGGGTTGAAGAAGGTTGTTGGGCTTTATATACTAAAACTTGTGATTTGTGATTGTTAAACTATTCTATAATTCAATAAACTTATTGAATTATTGTTCAATAAGTTGTCATTAAATAAAGAAATTGGCTTATAATAAAACTCATAATCCAATTCCTCTAGTATGAGTACTTGAACTTTATGTAGAAATATAAACATGGATCAAGTTTGAGTAATAGTCTGAATGGTCTATAGTATAAAAATAAGGTTGAGCACCTATTGGATCTGGGGACTCTATGGATGCGAGTCACTTTGTTTTAGTATGAGCGGAGTGATCTTGAGATGCTCATGTAGAGACGAGCAAGTGGAAACATCCTATGCAATGAGATTGTATGGATTGGACCATGAAATAATCACTTTTACAGTATAAATCATTTACTGTTTAAAATGGACTATTTCTACTTCATGATGACCTATAAAACTTGACCTTAATCTTAATCTAACTATGAACCTCCGTTCACATGGGATTATCCTTAGATCTACATAAGTGAAGGTAACTCATCAACGGTGGCCCAATAGACCTCCCATTTCAAAGGTAAGGTTGAGTAGGTAGTTGGAGACATAAAGTGTAAGACGAAATTTACTCCTATCCGCTTTTGGGGTTAGTAGATAAGTTGTTTCTTAAGTGTTGAATCCAAGTCTTGAACAAAAGGAACTGTCCTCTTATTGGCCTGAGAGAGATTCAATTTATAGGTTGAACCTTAAGCCAATTGGTTCATTAAAGGAACAAGATATAATCTCGGGGGTAATATGACAAATTGACCCAACCGAGATTATGAAAAAGCATGTAAAGGGTTGATTTAATAATCATAGCTATATTAAGTAAACACAAATATATCTACAGTGGTGAGAGTACAACTACGGGCTATAGTGGACAGTCTTGGTTAGCTAACGAATGTTGATTAACTCGGTTAAAAGAATTTAACGAGTTAATCTCGGATCATTGAGGCTCAGGTTCTGTAGGTCCATTAGGCTTCTCTACTAACTCATTATGGATATGAACTTAGAACAAAGTGATCAAGAAATTCAAATTGTTCAAATTAGTCAAGAAATATGAGTCGTTAGTAATATTCAATATAATTAACGATTATAAAACGAGAGAAATAATATTTAAATAAGATTCCAATATTAAAAATTAAAATAGAGATTGGTTGAAATTAAGTGGAATTTAATTAATTAAATCGTTTAATGTAATTTGTTTATTTTAAAATTAATTAATTAATTAAGTACAACAAGGAAAAATAGAAATTTTTTATTTTTTCTAAAAAGTCAAGGTAAAATGTTGACTTTTGACCTTTATAAGTCAAAGGTTGACTTTGATCTTGAATTAGCTGATAATTATCTTATTGTTGATGAGTAAGCTGATATGCGCCTATTATGCTGCTCATCAACATTTCTTCTGCCTAATCCACTATCTAATAGTTTGTTAAATGTCAAATTGTTATGCAAATATGATTTGTATGTACTTTAGCTATTTAATGCACAATTTGATTGTGTTCTTTACGATGATGAAAATTGAGATTTTTGGAAAAATTTCTTAAGTGTTCACAAACCTTTTCAAAATACCTCTCGTTCTCATCTCCTCCTTCAAAATCATTGTCTCTTTCACAGTCTTCAAAGCCAAACGCCTAATCACCACCTCCAATTCTGTTTCCCTAGCTGATCTCGACGTGTCGGTAAACCTAGCTACAGTCTCCGTCGACATCAATATTACTCTAATTGCCAGCATCTCAATCACGAACCCTAATAAGGTCGAATTCAACTACAAAGAACAACACCACGTTTTTGAATTATAGAGGGGAATTGTCGAAGTGCTGATTATGGCTGGAAAGATCGATGCAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCATTGAATACGTATACGAGGATTTCAGGTATGGTGAAGATTTTGGGGATTTATATGTTTTGTTTAGTATTCTGATGGAATTTATCGAACGTACATTAAGTATTTACTATAAGAGTTTACACAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACCCGTCGTCGTTGTGACATTTACCTCTAG

mRNA sequence

GAGTAACCTTATCGGGTTTTACTTTTGTTGTCACCTCGAAAGGTCCTACCAACTCAGCGTCTGTTGTGAGAGTGTTCACAAACCTTTTCAAAATACCTCTCGTTCTCATCTCCTCCTTCAAAATCATTGTCTCTTTCACAGTCTTCAAAGCCAAACGCCTAATCACCACCTCCAATTCTGTTTCCCTAGCTGATCTCGACGTGTCGGTAAACCTAGCTACAGTCTCCGTCGACATCAATATTACTCTAATTGCCAGCATCTCAATCACGAACCCTAATAAGGTCGAATTCAACTACAAAGAACAACACCACGTTTTTGAATTATAGAGGGGAATTGTCGAAGTGCTGATTATGGCTGGAAAGATCGATGCAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCATTGAATACGTATACGAGGATTTCAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACCCGTCGTCGTTGTGACATTTACCTCTAG

Coding sequence (CDS)

ATGGCTGGAAAGATCGATGCAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCATTGAATACGTATACGAGGATTTCAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACCCGTCGTCGTTGTGACATTTACCTCTAG

Protein sequence

MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISVCFNDTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL

Homology

[Close]

BLAST of MELO3C035014 vs. NCBI nr
Match: TYK01048.1 (F-box protein CPR30-like [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISVCFNDTEINTFS 60
          MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS      EINTFS
Sbjct: 1  MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS------EINTFS 60

Query: 61 FLKLPLSLNSLVSFFDTDFPLNDDLWLV 89
          FLKLPLSLNSLVSFFDTDFPLNDDL ++
Sbjct: 61 FLKLPLSLNSLVSFFDTDFPLNDDLCIL 82

[Close]

BLAST of MELO3C035014 vs. NCBI nr
Match: XP_008443617.1 (PREDICTED: F-box protein CPR30-like [Cucumis melo] >KAA0053770.1 F-box protein CPR30-like [Cucumis melo var. makuwa] >TYK25632.1 F-box protein CPR30-like [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 53  DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
           DTEIN FSFLKLPLSLNS VSFFDTDFPLN+D   VEILGHSHGLI LTRRRCDIYL
Sbjct: 65  DTEINNFSFLKLPLSLNSSVSFFDTDFPLNEDFRSVEILGHSHGLICLTRRRCDIYL 121

[Close]

BLAST of MELO3C035014 vs. NCBI nr
Match: XP_011652864.1 (F-box/kelch-repeat protein At3g06240-like [Cucumis sativus] >KAE8651217.1 hypothetical protein Csa_000922 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 53  DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
           DTE+NTFSFL+LPLSLNS VSFFD DFPLN+    VEI+GHSHGLI LT R  DI+L
Sbjct: 65  DTEVNTFSFLELPLSLNSSVSFFDIDFPLNEYFRWVEIIGHSHGLICLTVRHWDIFL 121

[Close]

BLAST of MELO3C035014 vs. NCBI nr
Match: TYK06201.1 (uncharacterized protein E5676_scaffold287G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 174

[Close]

BLAST of MELO3C035014 vs. NCBI nr
Match: XP_008463309.1 (PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 175

[Close]

BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match: A0A5D3BPQ5 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00560 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISVCFNDTEINTFS 60
          MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS      EINTFS
Sbjct: 1  MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS------EINTFS 60

Query: 61 FLKLPLSLNSLVSFFDTDFPLNDDLWLV 89
          FLKLPLSLNSLVSFFDTDFPLNDDL ++
Sbjct: 61 FLKLPLSLNSLVSFFDTDFPLNDDLCIL 82

[Close]

BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match: A0A5A7UEX1 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007920 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 53  DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
           DTEIN FSFLKLPLSLNS VSFFDTDFPLN+D   VEILGHSHGLI LTRRRCDIYL
Sbjct: 65  DTEINNFSFLKLPLSLNSSVSFFDTDFPLNEDFRSVEILGHSHGLICLTRRRCDIYL 121

[Close]

BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match: A0A1S3B974 (F-box protein CPR30-like OS=Cucumis melo OX=3656 GN=LOC103487173 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 53  DTEINTFSFLKLPLSLNSLVSFFDTDFPLNDDLWLVEILGHSHGLISLTRRRCDIYL 110
           DTEIN FSFLKLPLSLNS VSFFDTDFPLN+D   VEILGHSHGLI LTRRRCDIYL
Sbjct: 65  DTEINNFSFLKLPLSLNSSVSFFDTDFPLNEDFRSVEILGHSHGLICLTRRRCDIYL 121

[Close]

BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match: A0A5D3C2Q6 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00590 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.4e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 174

[Close]

BLAST of MELO3C035014 vs. ExPASy TrEMBL
Match: A0A5A7UIZ3 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00110 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.4e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKIDAGE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 175

[Close]

BLAST of MELO3C035014 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 2   AGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           A +I A +   +NIT+T+MADRLL  T + S+V+AG + LNT+ +++
Sbjct: 148 ANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVT 194

The following BLAST results are available for this feature:

BLAST of MELO3C035014 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035014 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01048.1	4.3e-31	89.77	F-box protein CPR30-like [Cucumis melo var. makuwa]	[more]
XP_008443617.1	1.4e-18	87.72	PREDICTED: F-box protein CPR30-like [Cucumis melo] >KAA0053770.1 F-box protein C...	[more]
XP_011652864.1	2.4e-13	73.68	F-box/kelch-repeat protein At3g06240-like [Cucumis sativus] >KAE8651217.1 hypoth...	[more]
TYK06201.1	1.5e-12	89.58	uncharacterized protein E5676_scaffold287G00590 [Cucumis melo var. makuwa]	[more]
XP_008463309.1	1.5e-12	89.58	PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo]	[more]

BLAST of MELO3C035014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPQ5	2.1e-31	89.77	F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UEX1	6.9e-19	87.72	F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B974	6.9e-19	87.72	F-box protein CPR30-like OS=Cucumis melo OX=3656 GN=LOC103487173 PE=4 SV=1	[more]
A0A5D3C2Q6	7.4e-13	89.58	LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UIZ3	7.4e-13	89.58	LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C035014 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54200.1	2.1e-04	44.68	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035014.1	MELO3C035014.1	mRNA