MELO3C034677 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034677
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr11: 9593556 .. 9594770 (+)
RNA-Seq Expression	MELO3C034677
Synteny	MELO3C034677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTATGATAAGCCAACGACACGGAAACAAAAGAAGGCATCATGCTCCAAATCTACCTAGAACCTTGATGGTTCGAAGATCTAGGCTCGTGAATGATCCTCTAGGGAGAACATGTTATTTGCGGAACTTAGAATCAGGAACGATTTGAAGGATGAAACATATTTAGCTACCTTCTTATTTTGCTGGTTATGCCTTTTCGTATTTCCACAGAAAGGATCATTTCTTCGTTCCAGAGTATTTATGGCTGCAAGCTTAATGGCTACTGGCACTATTTATAGTCTTGCAGTTCTAGTTTTGGCGAATATATATCATGTGCTAGGTTTGATAACCAAAGCCTCCAATCCGATAGGACGCATGGACTTTCACTTTCCCATGCATTACGTCCATGGCTAGTTAGCCCATTATTTTGGCACGCATTATCCACTTCCTACAGAAGTTCGAGCCCTCAAGACGACTAACTTTTTCACCGAAGGTGGGTCTATTTATTTTGACGAATATAAGGCACGAGAACTGATCCATAATGGTGCAAGAATTTTGTGGCACGCTAACCTCCAGAATAGGAATAAACATGAACGCATGGTTGATACTTATGATTCATCGTTTCTGCAGACTTTTTATTTTGTGAGCATGCGTTCCAGCTACTTGTCCTCTCGCTGTAGAAATACTTGGATCATAACATTATACAGTCCGTATCGATTTGGATGACAATCTGGTTTTTACCAGGATATCCCTAATGATATAGGGGCATGCCACTTGTGATCACACCAGATAATATGTTATATCACTAGATAATATGTACGAGGCATAATACTTTATCTGAGTTATACTTGCTTGCCCGTTCGTTAGAGCGTTGCAAGCATGTGACACAGCGATTTATAGACTGGTGGGCCACGGGGCACGAGACCTATTTTGAGGATAACATACATCATTTAGTGACTAGTGCCATTCTTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGGAGCAACCTGGATGGTAAAGAAATTCGTCTGGTTGAGGCGATGGCTGCTACTCTCGAAGAGGAGATAAAGGAGCATAAAGATGAGAGCGATAGCAGTAAAAATGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGTTATTAGGTGATGATCCTGACAGAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATGTTCCACCACTGGTTTGCACATTTTCCTTTCTTAATT

mRNA sequence

AGCTATGATAAGCCAACGACACGGAAACAAAAGAAGGCATCATGCTCCAAATCTACCTAGAACCTTGATGGTTCGAAGATCTAGGCTCGTGAATGATCCTCTAGGGAGAACATGTTATTTGCGGAACTTAGAATCAGGAACGATTTGAAGGATGAAACATATTTAGCTACCTTCTTATTTTGCTGGTTATGCCTTTTCGTATTTCCACAGAAAGGATCATTTCTTCGTTCCAGAGTATTTATGGCTGCAAGCTTAATGGCTACTGGCACTATTTATAGTCTTGCAGTTCTAGTTTTGGCGAATATATATCATGTGCTAGGTTTGATAACCAAAGCCTCCAATCCGATAGGACGCATGGACTTTCACTTTCCCATGCATTACGTCCATGGCTAGTTAGCCCATTATTTTGGCACGCATTATCCACTTCCTACAGAAGTTCGAGCCCTCAAGACGACTAACTTTTTCACCGAAGGTGGGTCTATTTATTTTGACGAATATAAGGCACGAGAACTGATCCATAATGGTGCAAGAATTTTGTGGCACGCTAACCTCCAGAATAGGAATAAACATGAACGCATGGTTGATACTTATGATTCATCGTTTCTGCAGACTTTTTATTTTGTGAGCATGCGTTCCAGCTACTTGTCCTCTCGCTGTAGAAATACTTGGATCATAACATTATACAGTCCGTATCGATTTGGATGACAATCTGGTTTTTACCAGGATATCCCTAATGATATAGGGGCATGCCACTTGTGATCACACCAGATAATATGTTATATCACTAGATAATATGTACGAGGCATAATACTTTATCTGAGTTATACTTGCTTGCCCGTTCGTTAGAGCGTTGCAAGCATGTGACACAGCGATTTATAGACTGGTGGGCCACGGGGCACGAGACCTATTTTGAGGATAACATACATCATTTAGTGACTAGTGCCATTCTTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGGAGCAACCTGGATGGTAAAGAAATTCGTCTGGTTGAGGCGATGGCTGCTACTCTCGAAGAGGAGATAAAGGAGCATAAAGATGAGAGCGATAGCAGTAAAAATGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGTTATTAGGTGATGATCCTGACAGAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATGTTCCACCACTGGTTTGCACATTTTCCTTTCTTAATT

Coding sequence (CDS)

ATGTTATTTGCGGAACTTAGAATCAGGAACGATTTGAAGGATGAAACATATTTAGCTACCTTCTTATTTTGCTGGTTATGCCTTTTCGTATTTCCACAGAAAGGATCATTTCTTCGTTCCAGAGTATTTATGGCTGCAAGCTTAATGGCTACTGGCACTATTTATAGTCTTGCAGTTCTAGTTTTGGCGAATATATATCATGTGCTAGGTTTGATAACCAAAGCCTCCAATCCGATAGGACGCATGGACTTTCACTTTCCCATGCATTACGTCCATGGCTAG

Protein sequence

MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVLVLANIYHVLGLITKASNPIGRMDFHFPMHYVHG

Homology

[Close]

BLAST of MELO3C034677 vs. NCBI nr
Match: ADN34118.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 164.1 bits (414), Expect = 5.8e-37
Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAELRI++DLKDETYLA FL CWLC FVFPQKGSFLR RVF AASLMA GTIYSLAVL
Sbjct: 39  MLFAELRIKDDLKDETYLAAFLSCWLCFFVFPQKGSFLRPRVFRAASLMAAGTIYSLAVL 98

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPI  MDFHFPMHYVHG
Sbjct: 99  VLANIYHGLGLITKASNPIRCMDFHFPMHYVHG 131

[Close]

BLAST of MELO3C034677 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF  ASLMA GTIYSLAV 
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 359

[Close]

BLAST of MELO3C034677 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF  ASLMA GTIYSLAV 
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 359

[Close]

BLAST of MELO3C034677 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF  ASLMA GTIYSLAV 
Sbjct: 306 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRLGVFRVASLMAAGTIYSLAVP 365

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 366 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 398

[Close]

BLAST of MELO3C034677 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-36
Identity = 81/93 (87.10%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
          MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF   SLMA GTIYSLAV 
Sbjct: 1  MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVVSLMAAGTIYSLAVP 60

Query: 61 VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
          VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 61 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 93

[Close]

BLAST of MELO3C034677 vs. ExPASy TrEMBL
Match: E5GCB9 (PMD domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAELRI++DLKDETYLA FL CWLC FVFPQKGSFLR RVF AASLMA GTIYSLAVL
Sbjct: 39  MLFAELRIKDDLKDETYLAAFLSCWLCFFVFPQKGSFLRPRVFRAASLMAAGTIYSLAVL 98

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPI  MDFHFPMHYVHG
Sbjct: 99  VLANIYHGLGLITKASNPIRCMDFHFPMHYVHG 131

[Close]

BLAST of MELO3C034677 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.8e-37
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF  ASLMA GTIYSLAV 
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 359

[Close]

BLAST of MELO3C034677 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.8e-37
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF  ASLMA GTIYSLAV 
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 359

[Close]

BLAST of MELO3C034677 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.3e-37
Identity = 82/93 (88.17%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
           MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF  ASLMA GTIYSLAV 
Sbjct: 306 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRLGVFRVASLMAAGTIYSLAVP 365

Query: 61  VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
           VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 366 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 398

[Close]

BLAST of MELO3C034677 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 81/93 (87.10%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MLFAELRIRNDLKDETYLATFLFCWLCLFVFPQKGSFLRSRVFMAASLMATGTIYSLAVL 60
          MLFAEL IR+DLKDETYLA FL CWLCLFVFPQKGSFLR  VF   SLMA GTIYSLAV 
Sbjct: 1  MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVVSLMAAGTIYSLAVP 60

Query: 61 VLANIYHVLGLITKASNPIGRMDFHFPMHYVHG 94
          VLANIYH LGLITKASNPIGRMDFHFPMHYVHG
Sbjct: 61 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHG 93

The following BLAST results are available for this feature:

BLAST of MELO3C034677 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34118.1	5.8e-37	88.17	hypothetical protein [Cucumis melo subsp. melo]	[more]
TYK20969.1	1.0e-36	88.17	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	1.0e-36	88.17	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
KAA0053466.1	1.3e-36	88.17	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	2.9e-36	87.10	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034677 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034677 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCB9	2.8e-37	88.17	PMD domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7U8X8	4.8e-37	88.17	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DCE5	4.8e-37	88.17	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UGW6	6.3e-37	88.17	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SQC9	1.4e-36	87.10	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO3C034677 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 14..75 e-value: 5.7E-10 score: 38.9
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 2..93
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 2..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034677.1	MELO3C034677.1	mRNA