MELO3C029060 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029060
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag-protease polyprotein
Location	chr01: 17625444 .. 17626527 (-)
RNA-Seq Expression	MELO3C029060
Synteny	MELO3C029060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTAAAGAAACCTCTGATTGGAGCCATTGTTATTCAAATCACATACTCTGGAATGAGTATTTTTGGCAAAAGCTGCTTTTACTTCTGGTATGAACAACTTCATTTTTATTTTCTATAGGCAAGCTTTTGGAACTTTCTTCCTTATCACTCCTACCATCCTTTTTAAAAGGTAATTAATTTTCTAATTTTAAATTCATTAATCACTATTTTCATACAACATTTCTCTCAAATAACACTTCTTTTTTTGTATGGATGTGTGGTATAAAAGAAGTAGCATGTTTATCGATAGGAGATATGTTCAAGATTTTCATGTTGGCCTTACTTGGGTAATTTTTACAACCTTTTTCTCTCTTTTTAAGATCAAAAAAGAAATTGAGTGTAATGCCCCAAATTTCGAGGTAAATCTTATCGTTTTTATGTTAATTTCGGGAATTTAAAAATTTTGGTGTTTATTTTTGGTTGGTTTTGAAGAGAAAGGAAAAAGAAAAGGAAAGGTATGAATTTTTACTAATATAATATGGTATAAATTAATATAATAATAATATAATATAAATTATATTATTATTATTATTATTATTATTATTATATATATATATATATATTTATATATATATATATATATATTTTAAAAAAAAGGAAAAACCCTAGCAAACGTGCGCGCCCGCCCCCTCCCCCCCGACTTCTTCTTCTTCTTCCTCCGTCCTTCACCTGACGCCGCCGTCCACTACCTTCATCCCTTCTTCTTCATCATTTTTGCATCACCATCGACTTCTCCGTCTCCAGCCCGATCGTTCTTCACCGTGCGCACGTCCTCGTCTTCTGCCCACGAACGGCCAGCCGCAGACGGTCCTCCTAATCGGTCATCCGATCGTTCGCAAGCCCGCCATCTTCGATGCTCCCTCTCTTCATCTCGTGCATTCGAGCAGGCCGTCGACTCCACATCCCCGACCATCAACTGGCCGCGTACGCCCAGTCGTCGTCGATGTCGATTTTTCTTCTGCCACTTTCAAATCGATTTGCATTGCACACCCGACCCGAGCCACCCTCTCTTTCAATCCGAGCCGCGAGCTGAGGATTGA

mRNA sequence

ATGGAACTAAAGAAACCTCTGATTGGAGCCATTGTTATTCAAATCACATACTCTGGAATGAGTATTTTTGGCAAAAGCTGCTTTTACTTCTGGTATGAACAACTTCATTTTTATTTTCTATAGGCAAGCTTTTGGAACTTTCTTCCTTATCACTCCTACCATCCTTTTTAAAAGAAGTAGCATGTTTATCGATAGGAGATATGTTCAAGATTTTCATGTTGGCCTTACTTGGATCAAAAAAGAAATTGAGTGTAATGCCCCAAATTTCGAGAGAAAGGAAAAAGAAAAGGAAAGGAAAAACCCTAGCAAACGTGCGCGCCCGCCCCCTCCCCCCCGACTTCTTCTTCTTCTTCCTCCGTCCTTCACCTGACGCCGCCGTCCACTACCTTCATCCCTTCTTCTTCATCATTTTTGCATCACCATCGACTTCTCCGTCTCCAGCCCGATCGTTCTTCACCGTGCGCACGTCCTCGTCTTCTGCCCACGAACGGCCAGCCGCAGACGGTCCTCCTAATCGGTCATCCGATCGTTCGCAAGCCCGCCATCTTCGATGCTCCCTCTCTTCATCTCGTGCATTCGAGCAGGCCGTCGACTCCACATCCCCGACCATCAACTGGCCGCGTACGCCCAGTCGTCGTCGATGTCGATTTTTCTTCTGCCACTTTCAAATCGATTTGCATTGCACACCCGACCCGAGCCACCCTCTCTTTCAATCCGAGCCGCGAGCTGAGGATTGA

Coding sequence (CDS)

ATGTTCAAGATTTTCATGTTGGCCTTACTTGGATCAAAAAAGAAATTGAGTGTAATGCCCCAAATTTCGAGAGAAAGGAAAAAGAAAAGGAAAGGAAAAACCCTAGCAAACGTGCGCGCCCGCCCCCTCCCCCCCGACTTCTTCTTCTTCTTCCTCCGTCCTTCACCTGACGCCGCCGTCCACTACCTTCATCCCTTCTTCTTCATCATTTTTGCATCACCATCGACTTCTCCGTCTCCAGCCCGATCGTTCTTCACCGTGCGCACGTCCTCGTCTTCTGCCCACGAACGGCCAGCCGCAGACGGTCCTCCTAATCGGTCATCCGATCGTTCGCAAGCCCGCCATCTTCGATGCTCCCTCTCTTCATCTCGTGCATTCGAGCAGGCCGTCGACTCCACATCCCCGACCATCAACTGGCCGCGTACGCCCAGTCGTCGTCGATGTCGATTTTTCTTCTGCCACTTTCAAATCGATTTGCATTGCACACCCGACCCGAGCCACCCTCTCTTTCAATCCGAGCCGCGAGCTGAGGATTGA

Protein sequence

MFKIFMLALLGSKKKLSVMPQISRERKKKRKGKTLANVRARPLPPDFFFFFLRPSPDAAVHYLHPFFFIIFASPSTSPSPARSFFTVRTSSSSAHERPAADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRRRCRFFFCHFQIDLHCTPDPSHPLFQSEPRAED

Homology

[Close]

BLAST of MELO3C029060 vs. NCBI nr
Match: TYK22466.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-21
Identity = 71/119 (59.66%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 39  RARPLPPDFFFFFLRPSPDAAVHYLHPFFFIIFASPSTSP-SPARSFFTVRTSSSSAHER 98
           R RPLPP                 LH FF      P   P SPARSFFTV T+SSS HER
Sbjct: 19  RRRPLPPSLL--------------LHHFF-----HPRRHPLSPARSFFTVHTTSSSVHER 78

Query: 99  PAADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRRRCRFFFCHFQ 157
           P  D P N S DRSQARH R SLSSSRA EQAVD ++PTI+ P TPSRRRCRFFFCH Q
Sbjct: 79  PIVDDPSNWSFDRSQARHRRQSLSSSRASEQAVDFSAPTIDRPLTPSRRRCRFFFCHLQ 118

[Close]

BLAST of MELO3C029060 vs. NCBI nr
Match: KAA0065813.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 7.3e-04
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 99  AADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRR 147
           +AD PPNRS DR Q R LR SL S RA EQAVDS+SPTI+ PR  + R
Sbjct: 55  SADDPPNRSFDRLQGRRLRRSLYSFRASEQAVDSSSPTIDRPRKGTAR 102

[Close]

BLAST of MELO3C029060 vs. ExPASy TrEMBL
Match: A0A5D3DFU2 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21746G00080 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.4e-22
Identity = 71/119 (59.66%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 39  RARPLPPDFFFFFLRPSPDAAVHYLHPFFFIIFASPSTSP-SPARSFFTVRTSSSSAHER 98
           R RPLPP                 LH FF      P   P SPARSFFTV T+SSS HER
Sbjct: 19  RRRPLPPSLL--------------LHHFF-----HPRRHPLSPARSFFTVHTTSSSVHER 78

Query: 99  PAADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRRRCRFFFCHFQ 157
           P  D P N S DRSQARH R SLSSSRA EQAVD ++PTI+ P TPSRRRCRFFFCH Q
Sbjct: 79  PIVDDPSNWSFDRSQARHRRQSLSSSRASEQAVDFSAPTIDRPLTPSRRRCRFFFCHLQ 118

[Close]

BLAST of MELO3C029060 vs. ExPASy TrEMBL
Match: A0A5A7VC73 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001150 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-04
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 99  AADGPPNRSSDRSQARHLRCSLSSSRAFEQAVDSTSPTINWPRTPSRR 147
           +AD PPNRS DR Q R LR SL S RA EQAVDS+SPTI+ PR  + R
Sbjct: 55  SADDPPNRSFDRLQGRRLRRSLYSFRASEQAVDSSSPTIDRPRKGTAR 102

The following BLAST results are available for this feature:

BLAST of MELO3C029060 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22466.1	1.7e-21	59.66	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065813.1	7.3e-04	64.58	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFU2	8.4e-22	59.66	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VC73	3.5e-04	64.58	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of MELO3C029060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029060.1	MELO3C029060.1	mRNA